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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007523
UUCD1 version UUC-ArT-00625
Ensembl Protein ID AT2G20000.1
UniProt Accession Q8LGU6; Q8W4M8; Q9SL81; CD27B_ARATH
Genbank Protein ID CAD31951.1; AAD24396.1; AEC06953.1; AAL32548.1; AAM91180.1
Protein Name Cell division cycle protein 27 homolog B; Protein HOBBIT
Genbank Nucleotide ID AJ487669; AC006081; CP002685; AY062470; AY128780
Gene Name CDC27B; HBT; At2g20000; T2G17.20
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G20000 AT2G20000.1 AT2G20000.1
AT2G20000 AT2G20000.2 AT2G20000.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPPTdbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 adaptor/Cullin RING/APC_C/APC_C 32.14 4.00e-47 184.00 IUUC-Sce-106187
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Functionally redundant with CDC27A in the control of gametophyte development.
 Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Functionally redundant with CDC27A in the control of gametophyte development.
Protein Sequence
(Fasta)
MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG 60
TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG AAGHYLLGLI YKYTDRRKNA 120
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Protein Fasta Sequence


>IUUC-Ath-007523|E3,APC_C|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
TATCCGCGAC CGCGAGATGA TCTTGAAGAG GTGTTTGCTT TATGAATGAC GATGAATCGG 60
CTCTGTTTTC CTGTTTCCAA CGGTTGTAAT CACACCATCA TCGTTGTCTT CATCTATACT 120
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Nucleotide Fasta Sequence


>IUUC-Ath-007523|E3,APC_C|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0181--Complete proteome
KW-0498--Mitosis
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0802--TPR repeat
KW-0833--Ubl conjugation pathway
Interpro

IPR013026--TPR-contain_dom
IPR011990--TPR-like_helical_dom
IPR001440--TPR_1
IPR019734--TPR_repeat
PROSITE

PS50005--TPR
PS50293--TPR_REGION
Pfam

PF00515--TPR_1
PF13181--TPR_8
SMART

SM00028--TPR
Gene Ontology

GO:0005680--C:anaphase-promoting complex
GO:0009504--C:cell plate
GO:0005634--C:nucleus
GO:0005819--C:spindle
GO:0030154--P:cell differentiation
GO:0051301--P:cell division
GO:0007067--P:mitotic nuclear division
GO:0016567--P:protein ubiquitination
GO:0007346--P:regulation of mitotic cell cycle
GO:0009733--P:response to auxin
GO:0048829--P:root cap development
GO:0048364--P:root development
GO:0010071--P:root meristem specification
KEGG ath:AT2G20000
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000478 Aegilops tauschii 51.00 0.00e+00 659.00
IUUC-Aml-002123 Ailuropoda melanoleuca 46.69 5.00e-95 341.00
IUUC-Atr-002921 Amborella trichopoda 58.97 0.00e+00 863.00
IUUC-Apl-003652 Anas platyrhynchos 44.89 3.00e-94 339.00
IUUC-Aca-004797 Anolis carolinensis 46.08 2.00e-92 332.00
IUUC-Aly-006146 Arabidopsis lyrata 47.06 2.00e-173 602.00
IUUC-Ago-007939 Ashbya gossypii 33.78 3.00e-48 185.00
IUUC-Acl-008169 Aspergillus clavatus 43.07 9.00e-77 281.00
IUUC-Afl-008631 Aspergillus flavus 41.60 9.00e-69 254.00
IUUC-Afu-008990 Aspergillus fumigatus 42.86 3.00e-75 275.00
IUUC-Ani-009208 Aspergillus nidulans 43.96 1.00e-43 170.00
IUUC-Ang-009561 Aspergillus niger 41.05 2.00e-76 280.00
IUUC-Aor-009958 Aspergillus oryzae 41.31 3.00e-68 253.00
IUUC-Ate-010597 Aspergillus terreus 35.97 7.00e-77 281.00
IUUC-Ame-010734 Astyanax mexicanus 46.58 5.00e-68 251.00
IUUC-Bgr-012282 Blumeria graminis 39.30 3.00e-64 239.00
IUUC-Bta-013499 Bos taurus 46.69 5.00e-95 341.00
IUUC-Bci-013946 Botrytis cinerea 37.53 1.00e-70 260.00
IUUC-Bdi-014213 Brachypodium distachyon 55.20 0.00e+00 766.00
IUUC-Bol-016307 Brassica oleracea 90.95 0.00e+00 1371.00
IUUC-Bra-017042 Brassica rapa 92.01 0.00e+00 1380.00
IUUC-Cel-018481 Caenorhabditis elegans 31.99 7.00e-43 168.00
IUUC-Cja-019393 Callithrix jacchus 46.39 4.00e-95 342.00
IUUC-Cfa-020221 Canis familiaris 46.69 5.00e-95 341.00
IUUC-Cpo-021792 Cavia porcellus 46.69 5.00e-95 341.00
IUUC-Csa-023091 Chlorocebus sabaeus 46.69 6.00e-95 341.00
IUUC-Cin-025231 Ciona intestinalis 30.49 2.00e-83 303.00
IUUC-Csv-025983 Ciona savignyi 41.49 4.00e-76 278.00
IUUC-Cgl-026436 Colletotrichum gloeosporioides 41.07 1.00e-63 237.00
IUUC-Cne-026779 Cryptococcus neoformans 37.59 2.00e-57 216.00
IUUC-Cme-027126 Cyanidioschyzon merolae 34.50 7.00e-53 201.00
IUUC-Dre-028038 Danio rerio 46.39 1.00e-93 337.00
IUUC-Dno-029681 Dasypus novemcinctus 46.69 5.00e-95 341.00
IUUC-Dor-030742 Dipodomys ordii 37.68 6.00e-50 191.00
IUUC-Dse-031468 Dothistroma septosporum 27.65 6.00e-58 218.00
IUUC-Dme-031900 Drosophila melanogaster 40.80 2.00e-63 236.00
IUUC-Ete-032396 Echinops telfairi 42.17 1.00e-83 303.00
IUUC-Eca-034414 Equus caballus 46.69 5.00e-95 341.00
IUUC-Eeu-034864 Erinaceus europaeus 40.66 5.00e-77 281.00
IUUC-Fca-036459 Felis catus 46.69 2.00e-94 339.00
IUUC-Fox-037700 Fusarium oxysporum 41.28 7.00e-65 239.00
IUUC-Fso-038112 Fusarium solani 39.30 9.00e-72 264.00
IUUC-Gmo-038876 Gadus morhua 46.13 3.00e-89 322.00
IUUC-Ggr-039822 Gaeumannomyces graminis 38.39 1.00e-65 244.00
IUUC-Gga-040585 Gallus gallus 45.01 1.00e-94 340.00
IUUC-Gac-042126 Gasterosteus aculeatus 33.63 2.00e-112 399.00
IUUC-Gma-044263 Glycine max 73.61 0.00e+00 1119.00
IUUC-Ggo-045272 Gorilla gorilla 39.76 5.00e-76 278.00
IUUC-Hsa-045682 Homo sapiens 46.69 7.00e-95 341.00
IUUC-Hvu-047421 Hordeum vulgare 70.87 5.00e-103 366.00
IUUC-Itr-048133 Ictidomys tridecemlineatus 46.69 4.00e-95 341.00
IUUC-Kpa-049367 Komagataella pastoris 26.30 4.00e-66 245.00
IUUC-Lch-049755 Latimeria chalumnae 46.79 1.00e-94 340.00
IUUC-Lpe-051689 Leersia perrieri 54.37 0.00e+00 770.00
IUUC-Loc-052907 Lepisosteus oculatus 46.60 7.00e-93 334.00
IUUC-Lma-053272 Leptosphaeria maculans 41.18 7.00e-67 248.00
IUUC-Laf-054312 Loxodonta africana 46.39 1.00e-94 340.00
IUUC-Mcc-055312 Macaca mulatta 46.69 6.00e-95 341.00
IUUC-Meu-056290 Macropus eugenii 39.30 5.00e-74 271.00
IUUC-Mor-057118 Magnaporthe oryzae 38.39 2.00e-65 243.00
IUUC-Mpo-057620 Magnaporthe poae 38.39 1.00e-65 243.00
IUUC-Mtr-058302 Medicago truncatula 66.54 0.00e+00 1031.00
IUUC-Mla-058835 Melampsora laricipopulina 30.75 1.00e-42 166.00
IUUC-Mga-060010 Meleagris gallopavo 46.39 3.00e-94 339.00
IUUC-Mvi-060340 Microbotryum violaceum 37.46 6.00e-58 218.00
IUUC-Mmr-060610 Microcebus murinus 46.69 3.00e-89 322.00
IUUC-Mdo-062216 Monodelphis domestica 46.08 2.00e-94 339.00
IUUC-Mmu-063476 Mus musculus 46.08 4.00e-94 338.00
IUUC-Mac-065409 Musa acuminata 60.16 0.00e+00 879.00
IUUC-Mpu-066213 Mustela putorius furo 46.69 5.00e-95 341.00
IUUC-Mlu-067540 Myotis lucifugus 46.69 5.00e-95 341.00
IUUC-Nfi-068437 Neosartorya fischeri 43.90 2.00e-76 280.00
IUUC-Ncr-068882 Neurospora crassa 39.36 5.00e-70 258.00
IUUC-Nle-068976 Nomascus leucogenys 46.69 6.00e-95 341.00
IUUC-Opr-071171 Ochotona princeps 42.47 4.00e-83 301.00
IUUC-Ont-071295 Oreochromis niloticus 45.97 7.00e-93 334.00
IUUC-Oan-072896 Ornithorhynchus anatinus 48.42 1.00e-86 312.00
IUUC-Ocu-074828 Oryctolagus cuniculus 46.69 3.00e-95 342.00
IUUC-Oba-075176 Oryza barthii 50.94 0.00e+00 736.00
IUUC-Obr-076622 Oryza brachyantha 55.72 0.00e+00 797.00
IUUC-Ogu-078158 Oryza glumaepatula 54.14 0.00e+00 793.00
IUUC-Oin-079840 Oryza indica 55.48 0.00e+00 824.00
IUUC-Olo-080632 Oryza longistaminata 69.48 2.00e-132 465.00
IUUC-Ome-081193 Oryza meridionalis 55.35 0.00e+00 819.00
IUUC-Oni-082335 Oryza nivara 52.76 0.00e+00 772.00
IUUC-Opu-083857 Oryza punctata 69.79 3.00e-123 434.00
IUUC-Oru-085165 Oryza rufipogon 52.49 0.00e+00 766.00
IUUC-Osa-085529 Oryza sativa 68.66 2.00e-142 497.00
IUUC-Olu-087803 Ostreococcus lucimarinus 50.84 1.00e-93 335.00
IUUC-Oga-088851 Otolemur garnettii 46.69 7.00e-95 341.00
IUUC-Oar-089794 Ovis aries 46.69 5.00e-95 341.00
IUUC-Ptr-091588 Pan troglodytes 46.69 5.00e-95 341.00
IUUC-Pan-092083 Papio anubis 46.69 9.00e-95 340.00
IUUC-Psi-093368 Pelodiscus sinensis 46.39 4.00e-94 338.00
IUUC-Pma-094306 Petromyzon marinus 46.06 1.00e-91 330.00
IUUC-Pno-094898 Phaeosphaeria nodorum 37.89 2.00e-68 253.00
IUUC-Ppa-095288 Physcomitrella patens 44.81 5.00e-172 597.00
IUUC-Pfo-097263 Poecilia formosa 46.27 3.00e-93 335.00
IUUC-Pab-097782 Pongo abelii 46.69 5.00e-95 341.00
IUUC-Pca-100771 Procavia capensis 39.04 2.00e-69 256.00
IUUC-Ppe-102042 Prunus persica 70.60 0.00e+00 1042.00
IUUC-Pva-103207 Pteropus vampyrus 46.69 5.00e-95 341.00
IUUC-Pgr-103352 Puccinia graminis 34.23 5.00e-47 182.00
IUUC-Ptt-103992 Puccinia triticina 38.99 2.00e-28 120.00
IUUC-Pte-104138 Pyrenophora teres 28.37 3.00e-73 269.00
IUUC-Pyt-104652 Pyrenophora triticirepentis 26.85 2.00e-72 266.00
IUUC-Rno-105451 Rattus norvegicus 46.08 5.00e-94 338.00
IUUC-Sce-106187 Saccharomyces cerevisiae 32.14 2.00e-47 183.00
IUUC-Sha-107398 Sarcophilus harrisii 44.60 1.00e-93 337.00
IUUC-Sja-107984 Schizosaccharomyces japonicus 40.67 4.00e-68 251.00
IUUC-Spo-108274 Schizosaccharomyces pombe 40.37 4.00e-75 275.00
IUUC-Smo-109678 Selaginella moellendorffii 51.63 1.00e-137 483.00
IUUC-Sit-110813 Setaria italica 55.61 0.00e+00 774.00
IUUC-Sly-111637 Solanum lycopersicum 70.18 0.00e+00 832.00
IUUC-Stu-112086 Solanum tuberosum 70.39 0.00e+00 1039.00
IUUC-Sar-113214 Sorex araneus 46.99 3.00e-95 342.00
IUUC-Sre-114904 Sporisorium reilianum 33.20 8.00e-29 122.00
IUUC-Ssc-115692 Sus scrofa 49.07 4.00e-68 251.00
IUUC-Tgu-116466 Taeniopygia guttata 45.01 2.00e-94 340.00
IUUC-Tru-118417 Takifugu rubripes 45.62 3.00e-92 332.00
IUUC-Tsy-118796 Tarsius syrichta 46.69 7.00e-95 341.00
IUUC-Tni-120331 Tetraodon nigroviridis 45.27 5.00e-91 327.00
IUUC-Tca-121321 Theobroma cacao 56.08 0.00e+00 756.00
IUUC-Tre-122083 Trichoderma reesei 38.67 3.00e-66 246.00
IUUC-Tvi-122558 Trichoderma virens 38.97 1.00e-68 254.00
IUUC-Tae-125209 Triticum aestivum 56.62 0.00e+00 809.00
IUUC-Tur-126187 Triticum urartu 48.62 1.00e-167 583.00
IUUC-Tme-127012 Tuber melanosporum 42.47 1.00e-74 273.00
IUUC-Tbe-127774 Tupaia belangeri 40.06 1.00e-75 276.00
IUUC-Ttr-128605 Tursiops truncatus 42.47 3.00e-84 306.00
IUUC-Uma-129576 Ustilago maydis 34.01 7.00e-28 119.00
IUUC-Vda-129996 Verticillium dahliae 37.35 6.00e-50 189.00
IUUC-Vpa-130122 Vicugna pacos 46.69 6.00e-95 341.00
IUUC-Vvi-131580 Vitis vinifera 72.37 0.00e+00 1101.00
IUUC-Xtr-131756 Xenopus tropicalis 45.24 1.00e-88 320.00
IUUC-Xma-133214 Xiphophorus maculatus 46.27 2.00e-92 333.00
IUUC-Yli-134473 Yarrowia lipolytica 37.50 2.00e-63 236.00
IUUC-Zma-135179 Zea mays 55.21 0.00e+00 794.00
Created Date 25-Jun-2017

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