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Tag Content
iUUCD ID IUUC-Ssc-116329
Ensembl Protein ID ENSSSCP00000005831.2
UniProt Accession F1SP32; F1SP32_PIG
Genbank Protein ID ENSSSCP00000005831
Protein Name Uncharacterized protein
Genbank Nucleotide ID CU463059
Gene Name RAD23B
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000005436.2 ENSSSCT00000005980.2 ENSSSCP00000005831.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/UBA 2.10e-19 69.3 190 227
ULD/UDP/UBQ/UBQ_PIM 2.70e-27 94.8 1 78
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
    +e ++ ++++MG++re+++ aLra++nn+++AveyLl
   Q: 190 YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 227
    5789********************************95 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
    m++t+ktl++++f++++++++tv++lKeki++e+g +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGkdaFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
    99*************************************************************************997 PP
   

Organism Sus scrofa
Protein Sequence
(Fasta)
MQITLKTLQQ QTFKIDIDPE ETVKALKEKI ESEKGKDAFP VAGQKLIYAG KILNDDTALK 60
EYKIDEKNFV VVMVTKPKAV TTPAPATTQQ SNSATTTTVS SSTAPAAAQA PTPAPALAPT 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ssc-116329|UBD,UBA;ULD,UBQ_PIM|Sus scrofa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCCCACTGAC TACGCCTGCG CACGCGCGAT CCAGGACGCC GACATTCCAG AGCCGTAATC 60
CGCCCCGCCC CAATTCCGGG GCGGAGTTCT CGGCTGCGCC TGCGCACAGG CTCGCCGCAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ssc-116329|UBD,UBA;ULD,UBQ_PIM|Sus scrofa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0071942--C:XPC complex
GO:0003684--F:damaged DNA binding
GO:0000715--P:nucleotide-excision repair, DNA damage recognition
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

KEGG ssc:100153668
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000770 Aegilops tauschii 36.14 5.00e-32 132.00
IUUC-Aml-001195 Ailuropoda melanoleuca 96.19 8.00e-89 320.00
IUUC-Atr-003116 Amborella trichopoda 37.20 3.00e-31 129.00
IUUC-Apl-003371 Anas platyrhynchos 85.29 4.00e-89 321.00
IUUC-Aca-004599 Anolis carolinensis 79.58 8.00e-89 320.00
IUUC-Afu-008877 Aspergillus fumigatus 44.20 1.00e-18 87.00
IUUC-Ate-010458 Aspergillus terreus 40.32 7.00e-30 124.00
IUUC-Ame-011107 Astyanax mexicanus 67.96 2.00e-33 136.00
IUUC-Bta-012922 Bos taurus 95.59 5.00e-134 470.00
IUUC-Bdi-014253 Brachypodium distachyon 36.14 3.00e-34 139.00
IUUC-Bol-015354 Brassica oleracea 36.40 3.00e-37 148.00
IUUC-Bra-017582 Brassica rapa 36.03 6.00e-37 147.00
IUUC-Cja-018772 Callithrix jacchus 93.89 7.00e-139 486.00
IUUC-Cfa-020683 Canis familiaris 96.60 2.00e-95 342.00
IUUC-Cpo-022145 Cavia porcellus 89.00 2.00e-126 445.00
IUUC-Cre-022810 Chlamydomonas reinhardtii 37.50 3.00e-30 125.00
IUUC-Csa-023714 Chlorocebus sabaeus 95.35 2.00e-148 518.00
IUUC-Cho-024814 Choloepus hoffmanni 72.98 6.00e-80 290.00
IUUC-Cin-025741 Ciona intestinalis 40.55 1.00e-34 140.00
IUUC-Cne-027056 Cryptococcus neoformans 48.72 1.00e-15 77.40
IUUC-Dre-028369 Danio rerio 72.43 8.00e-82 296.00
IUUC-Dno-029543 Dasypus novemcinctus 98.50 5.00e-103 367.00
IUUC-Dse-031336 Dothistroma septosporum 49.61 4.00e-17 82.40
IUUC-Ete-032583 Echinops telfairi 81.28 6.00e-65 241.00
IUUC-Eca-034243 Equus caballus 99.57 6.00e-99 353.00
IUUC-Eeu-034721 Erinaceus europaeus 89.10 9.00e-69 253.00
IUUC-Fca-035679 Felis catus 97.74 3.00e-101 361.00
IUUC-Fal-037148 Ficedula albicollis 81.93 7.00e-85 307.00
IUUC-Fox-037960 Fusarium oxysporum 43.28 1.00e-15 77.00
IUUC-Gmo-039080 Gadus morhua 62.92 2.00e-60 225.00
IUUC-Ggr-040116 Gaeumannomyces graminis 44.78 6.00e-16 78.20
IUUC-Gga-040544 Gallus gallus 74.42 1.00e-115 409.00
IUUC-Gma-043937 Glycine max 36.14 9.00e-40 157.00
IUUC-Ggo-045125 Gorilla gorilla 98.31 2.00e-95 342.00
IUUC-Hsa-046519 Homo sapiens 98.31 2.00e-95 342.00
IUUC-Hvu-047832 Hordeum vulgare 36.55 2.00e-34 139.00
IUUC-Itr-048295 Ictidomys tridecemlineatus 91.93 7.00e-127 446.00
IUUC-Kpa-049314 Komagataella pastoris 36.67 6.00e-31 127.00
IUUC-Lch-050553 Latimeria chalumnae 66.67 5.00e-91 327.00
IUUC-Lpe-050801 Leersia perrieri 35.10 3.00e-34 138.00
IUUC-Loc-051748 Lepisosteus oculatus 74.47 2.00e-75 275.00
IUUC-Lma-053328 Leptosphaeria maculans 50.00 8.00e-14 67.80
IUUC-Laf-054293 Loxodonta africana 96.62 3.00e-98 351.00
IUUC-Mcc-055600 Macaca mulatta 98.12 4.00e-102 364.00
IUUC-Meu-056082 Macropus eugenii 64.00 5.00e-68 251.00
IUUC-Mor-057287 Magnaporthe oryzae 48.72 4.00e-16 78.60
IUUC-Mpo-057609 Magnaporthe poae 44.96 3.00e-15 75.50
IUUC-Mtr-058148 Medicago truncatula 36.68 5.00e-41 161.00
IUUC-Mla-058961 Melampsora laricipopulina 46.62 2.00e-25 110.00
IUUC-Mga-060060 Meleagris gallopavo 49.02 2.00e-15 76.30
IUUC-Mvi-060220 Microbotryum violaceum 43.61 2.00e-21 96.70
IUUC-Mmr-061159 Microcebus murinus 96.22 5.00e-94 337.00
IUUC-Mdo-061967 Monodelphis domestica 86.44 5.00e-86 310.00
IUUC-Mmu-063258 Mus musculus 90.77 1.00e-100 359.00
IUUC-Mpu-066389 Mustela putorius furo 96.61 4.00e-89 321.00
IUUC-Mlu-067999 Myotis lucifugus 95.13 4.00e-101 361.00
IUUC-Nfi-068390 Neosartorya fischeri 44.20 1.00e-18 87.00
IUUC-Ncr-068685 Neurospora crassa 44.78 2.00e-24 105.00
IUUC-Nle-069655 Nomascus leucogenys 94.87 3.00e-141 494.00
IUUC-Opr-070234 Ochotona princeps 88.89 9.00e-29 120.00
IUUC-Oan-073258 Ornithorhynchus anatinus 88.40 6.00e-52 196.00
IUUC-Ocu-074831 Oryctolagus cuniculus 94.38 2.00e-95 342.00
IUUC-Ogl-077067 Oryza glaberrima 31.55 6.00e-52 197.00
IUUC-Ola-086540 Oryzias latipes 65.18 3.00e-64 238.00
IUUC-Olu-087843 Ostreococcus lucimarinus 41.92 9.00e-38 150.00
IUUC-Oga-088023 Otolemur garnettii 87.89 2.00e-137 481.00
IUUC-Oar-089964 Ovis aries 96.37 9.00e-122 429.00
IUUC-Ptr-091165 Pan troglodytes 98.31 3.00e-95 341.00
IUUC-Pan-092009 Papio anubis 94.66 4.00e-141 493.00
IUUC-Psi-093477 Pelodiscus sinensis 84.50 4.00e-82 298.00
IUUC-Pno-095064 Phaeosphaeria nodorum 48.68 6.00e-15 75.10
IUUC-Ppa-095654 Physcomitrella patens 39.52 3.00e-36 145.00
IUUC-Pfo-097385 Poecilia formosa 64.32 3.00e-71 261.00
IUUC-Pab-097868 Pongo abelii 98.31 9.00e-95 339.00
IUUC-Pca-100652 Procavia capensis 95.50 7.00e-70 257.00
IUUC-Pva-102137 Pteropus vampyrus 99.58 8.00e-101 360.00
IUUC-Ptt-103717 Puccinia triticina 45.11 1.00e-24 107.00
IUUC-Pte-104303 Pyrenophora teres 50.00 2.00e-19 89.70
IUUC-Pyt-104580 Pyrenophora triticirepentis 49.64 2.00e-19 89.40
IUUC-Rno-104844 Rattus norvegicus 89.40 5.00e-141 493.00
IUUC-Sce-106214 Saccharomyces cerevisiae 62.50 1.00e-12 67.40
IUUC-Sha-107073 Sarcophilus harrisii 87.29 1.00e-86 313.00
IUUC-Sja-107851 Schizosaccharomyces japonicus 41.43 2.00e-38 152.00
IUUC-Spo-108298 Schizosaccharomyces pombe 42.80 1.00e-38 153.00
IUUC-Sar-112925 Sorex araneus 89.85 4.00e-88 318.00
IUUC-Sre-114894 Sporisorium reilianum 51.61 3.00e-11 62.80
IUUC-Tru-118651 Takifugu rubripes 63.49 6.00e-71 260.00
IUUC-Tsy-118836 Tarsius syrichta 98.53 1.00e-48 186.00
IUUC-Tvi-122617 Trichoderma virens 51.28 3.00e-18 85.50
IUUC-Tae-124646 Triticum aestivum 36.14 6.00e-33 134.00
IUUC-Tur-126610 Triticum urartu 36.14 1.00e-32 134.00
IUUC-Tbe-127493 Tupaia belangeri 81.11 1.00e-70 259.00
IUUC-Ttr-128464 Tursiops truncatus 98.87 1.00e-105 376.00
IUUC-Uma-129484 Ustilago maydis 47.54 8.00e-12 64.70
IUUC-Vda-129946 Verticillium dahliae 45.52 2.00e-17 83.20
IUUC-Vpa-130357 Vicugna pacos 92.98 4.00e-66 244.00
IUUC-Vvi-130842 Vitis vinifera 36.36 1.00e-37 150.00
IUUC-Xtr-132679 Xenopus tropicalis 81.33 3.00e-66 245.00
IUUC-Yli-134615 Yarrowia lipolytica 42.79 3.00e-38 152.00
Created Date 25-Jun-2017

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