iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-27	93.9	529	562
UBD/Beta-Prp	1.50e-48	166.4	397	565

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlr 31
           gH++ v+c+++  ++ ++l+s+sdDgti++W l+
   Q: 529  GHAGAVNCVSWspTNlHMLASASDDGTIRIWGLD 562
           8***********766999*************986 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlsl 100
           + kg++++ ++++++++d+++l++ ++d+ i ++d +   ++++l + e+ +t+ ++s+d k+++     + i++w+++ ++k+v+ +kgh++s   +
   Q: 397  CWKGQRTQKVSDIAMTDDGKWLVSVCKDSVISLFDREA--TVERLIEEEDMITSFSLSNDNKYILVNLLNQEIRLWNIEgDPKIVSRYKGHKRSRFII 492
           678899999**************************999..899************************************999***********98888 PP
   S: 101  sfsp...sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl...k 167
           +++    ++ +++sGs+d+ + +w+ +tg+ +   l gh g+vncv+++p++  +l+s+s+D+t+r+W l   +
   Q: 493  RSCFggyKQAFIASGSEDSQVYIWHRSTGKLIV-ELPGHAGAVNCVSWSPTNlHMLASASDDGTIRIWGLdriN 565
           8887774669***********************.**********************************885551 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGVVEDTEPP LKRAKRLADE PNGFSANSSV RGSSVNSNSL GDLMARPLPS QGDDETIGSK 60
GVIRKSEFVR IITRALYSLG YDKTGAMLEE ESGISLHNST IKLFLQQVKD GKWDQSVKTL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTCTCTCCT TTTCATCTTC TTTAACGCTT CTCTTTTCCA GAACTTGCTC TCTCTCTCTC 60
TTTCTATCAT CTCCTCACCG CTTCCTAAAT CTCTATAGCG GTCTTCCTTC CCTCCTTTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0009737--P:response to abscisic acid
GO:0009733--P:response to auxin
GO:0009723--P:response to ethylene
GO:0009416--P:response to light stimulus
GO:0006970--P:response to osmotic stress

KEGG

ath:AT5G08560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000905	Aegilops tauschii	58.38	0.00e+00	674.00
IUUC-Aml-001381	Ailuropoda melanoleuca	36.71	5.00e-84	304.00
IUUC-Atr-002649	Amborella trichopoda	58.68	0.00e+00	724.00
IUUC-Apl-003200	Anas platyrhynchos	36.86	2.00e-82	298.00
IUUC-Aca-005122	Anolis carolinensis	38.81	3.00e-85	308.00
IUUC-Aly-006260	Arabidopsis lyrata	95.25	0.00e+00	1099.00
IUUC-Ago-007896	Ashbya gossypii	22.92	1.00e-40	160.00
IUUC-Acl-008259	Aspergillus clavatus	32.72	8.00e-85	307.00
IUUC-Afl-008669	Aspergillus flavus	30.99	8.00e-82	297.00
IUUC-Ani-009455	Aspergillus nidulans	29.21	4.00e-68	252.00
IUUC-Ang-009832	Aspergillus niger	31.85	2.00e-73	269.00
IUUC-Aor-010221	Aspergillus oryzae	31.95	2.00e-85	309.00
IUUC-Ate-010262	Aspergillus terreus	33.14	2.00e-84	306.00
IUUC-Ame-011448	Astyanax mexicanus	36.88	1.00e-85	310.00
IUUC-Bgr-012047	Blumeria graminis	33.14	1.00e-72	267.00
IUUC-Bta-012566	Bos taurus	37.20	8.00e-81	293.00
IUUC-Bci-013589	Botrytis cinerea	31.76	8.00e-74	270.00
IUUC-Bdi-014338	Brachypodium distachyon	57.26	0.00e+00	694.00
IUUC-Bol-015143	Brassica oleracea	86.80	0.00e+00	1000.00
IUUC-Bra-017245	Brassica rapa	83.42	0.00e+00	969.00
IUUC-Cja-019082	Callithrix jacchus	36.71	3.00e-84	305.00
IUUC-Cfa-020788	Canis familiaris	37.00	2.00e-80	292.00
IUUC-Cpo-022453	Cavia porcellus	36.99	1.00e-81	296.00
IUUC-Csa-023815	Chlorocebus sabaeus	36.26	4.00e-65	241.00
IUUC-Csv-026251	Ciona savignyi	37.52	2.00e-80	292.00
IUUC-Cgl-026607	Colletotrichum gloeosporioides	30.29	2.00e-68	252.00
IUUC-Cme-027218	Cyanidioschyzon merolae	27.92	7.00e-63	234.00
IUUC-Dre-027404	Danio rerio	37.67	6.00e-82	297.00
IUUC-Dno-029089	Dasypus novemcinctus	36.28	1.00e-82	300.00
IUUC-Dor-030714	Dipodomys ordii	36.36	2.00e-59	222.00
IUUC-Dse-031569	Dothistroma septosporum	28.23	2.00e-64	239.00
IUUC-Dme-032077	Drosophila melanogaster	34.98	1.00e-81	296.00
IUUC-Eca-033943	Equus caballus	36.88	4.00e-81	294.00
IUUC-Fal-036639	Ficedula albicollis	35.65	4.00e-83	301.00
IUUC-Fox-037720	Fusarium oxysporum	31.24	4.00e-69	254.00
IUUC-Fso-038206	Fusarium solani	30.31	3.00e-68	252.00
IUUC-Gmo-038610	Gadus morhua	33.90	9.00e-83	300.00
IUUC-Ggr-039738	Gaeumannomyces graminis	33.27	4.00e-76	278.00
IUUC-Gga-040577	Gallus gallus	35.86	1.00e-85	310.00
IUUC-Gac-041352	Gasterosteus aculeatus	34.79	1.00e-82	300.00
IUUC-Gma-044009	Glycine max	62.27	0.00e+00	728.00
IUUC-Ggo-044684	Gorilla gorilla	36.71	2.00e-84	306.00
IUUC-Hsa-046838	Homo sapiens	36.71	2.00e-84	306.00
IUUC-Hvu-047610	Hordeum vulgare	57.17	0.00e+00	699.00
IUUC-Itr-048020	Ictidomys tridecemlineatus	36.71	2.00e-84	305.00
IUUC-Kpa-049141	Komagataella pastoris	26.92	3.00e-56	212.00
IUUC-Lpe-050963	Leersia perrieri	58.99	0.00e+00	734.00
IUUC-Loc-052708	Lepisosteus oculatus	38.61	4.00e-85	308.00
IUUC-Lma-053156	Leptosphaeria maculans	34.14	9.00e-76	277.00
IUUC-Laf-054153	Loxodonta africana	36.33	3.00e-84	305.00
IUUC-Mcc-054742	Macaca mulatta	36.71	2.00e-84	306.00
IUUC-Mor-056939	Magnaporthe oryzae	35.12	1.00e-81	296.00
IUUC-Mpo-057600	Magnaporthe poae	33.14	5.00e-75	275.00
IUUC-Mtr-058261	Medicago truncatula	59.43	0.00e+00	694.00
IUUC-Mla-058912	Melampsora laricipopulina	37.01	2.00e-78	285.00
IUUC-Mga-059811	Meleagris gallopavo	34.55	2.00e-69	255.00
IUUC-Mvi-060274	Microbotryum violaceum	35.47	1.00e-88	320.00
IUUC-Mmr-060823	Microcebus murinus	36.71	3.00e-84	305.00
IUUC-Mdo-062394	Monodelphis domestica	38.81	4.00e-85	308.00
IUUC-Mmu-063924	Mus musculus	36.52	4.00e-84	305.00
IUUC-Mac-065563	Musa acuminata	61.10	0.00e+00	751.00
IUUC-Mpu-066858	Mustela putorius furo	36.98	5.00e-82	298.00
IUUC-Mlu-067659	Myotis lucifugus	36.71	3.00e-84	305.00
IUUC-Nfi-068498	Neosartorya fischeri	33.09	6.00e-84	304.00
IUUC-Ncr-068832	Neurospora crassa	30.59	9.00e-64	237.00
IUUC-Nle-069654	Nomascus leucogenys	37.00	2.00e-80	292.00
IUUC-Ont-071547	Oreochromis niloticus	37.28	3.00e-85	308.00
IUUC-Oan-073045	Ornithorhynchus anatinus	34.47	1.00e-74	273.00
IUUC-Ocu-073812	Oryctolagus cuniculus	35.76	6.00e-82	297.00
IUUC-Oba-075071	Oryza barthii	59.16	0.00e+00	739.00
IUUC-Obr-076614	Oryza brachyantha	58.32	0.00e+00	716.00
IUUC-Ogl-076963	Oryza glaberrima	61.05	0.00e+00	721.00
IUUC-Ogu-078436	Oryza glumaepatula	61.05	0.00e+00	721.00
IUUC-Oin-080021	Oryza indica	60.87	0.00e+00	718.00
IUUC-Olo-080298	Oryza longistaminata	60.87	0.00e+00	719.00
IUUC-Ome-081202	Oryza meridionalis	58.99	0.00e+00	736.00
IUUC-Oni-082604	Oryza nivara	58.99	0.00e+00	737.00
IUUC-Opu-083763	Oryza punctata	59.16	0.00e+00	738.00
IUUC-Oru-084243	Oryza rufipogon	58.99	0.00e+00	737.00
IUUC-Osa-086153	Oryza sativa	58.75	0.00e+00	635.00
IUUC-Ola-086670	Oryzias latipes	33.97	3.00e-84	305.00
IUUC-Oga-088723	Otolemur garnettii	34.91	2.00e-76	279.00
IUUC-Oar-090125	Ovis aries	36.90	1.00e-84	306.00
IUUC-Ptr-090787	Pan troglodytes	37.00	2.00e-80	292.00
IUUC-Pan-092573	Papio anubis	35.41	2.00e-42	166.00
IUUC-Psi-093579	Pelodiscus sinensis	39.21	8.00e-81	293.00
IUUC-Pno-094912	Phaeosphaeria nodorum	32.07	1.00e-76	280.00
IUUC-Ppa-095289	Physcomitrella patens	51.37	5.00e-159	553.00
IUUC-Pfo-096394	Poecilia formosa	37.67	5.00e-86	311.00
IUUC-Pab-098459	Pongo abelii	36.52	3.00e-82	298.00
IUUC-Pop-099989	Populus trichocarpa	61.22	0.00e+00	736.00
IUUC-Ppe-101227	Prunus persica	64.63	0.00e+00	807.00
IUUC-Pva-102404	Pteropus vampyrus	35.00	2.00e-70	259.00
IUUC-Pgr-103411	Puccinia graminis	30.80	1.00e-28	121.00
IUUC-Ptt-103705	Puccinia triticina	27.92	1.00e-37	150.00
IUUC-Pte-104023	Pyrenophora teres	33.11	2.00e-75	276.00
IUUC-Pyt-104759	Pyrenophora triticirepentis	32.77	2.00e-73	270.00
IUUC-Rno-105335	Rattus norvegicus	36.60	5.00e-80	291.00
IUUC-Sha-106497	Sarcophilus harrisii	36.98	3.00e-81	295.00
IUUC-Sja-107894	Schizosaccharomyces japonicus	35.56	1.00e-81	296.00
IUUC-Spo-108235	Schizosaccharomyces pombe	33.91	6.00e-80	290.00
IUUC-Smo-109054	Selaginella moellendorffii	50.00	5.00e-160	556.00
IUUC-Sit-110575	Setaria italica	57.64	0.00e+00	706.00
IUUC-Sly-111167	Solanum lycopersicum	59.52	0.00e+00	659.00
IUUC-Stu-112726	Solanum tuberosum	57.41	0.00e+00	686.00
IUUC-Sbi-114344	Sorghum bicolor	57.31	0.00e+00	707.00
IUUC-Ssc-115532	Sus scrofa	36.71	2.00e-84	305.00
IUUC-Tgu-116728	Taeniopygia guttata	36.24	1.00e-84	306.00
IUUC-Tru-118471	Takifugu rubripes	37.36	1.00e-86	313.00
IUUC-Tni-119720	Tetraodon nigroviridis	34.29	2.00e-82	299.00
IUUC-Tca-121103	Theobroma cacao	68.03	0.00e+00	814.00
IUUC-Tre-122234	Trichoderma reesei	30.36	2.00e-68	252.00
IUUC-Tae-125720	Triticum aestivum	57.02	0.00e+00	692.00
IUUC-Tur-126726	Triticum urartu	54.39	0.00e+00	671.00
IUUC-Tme-126972	Tuber melanosporum	38.00	4.00e-95	342.00
IUUC-Uma-129354	Ustilago maydis	30.13	2.00e-33	137.00
IUUC-Vda-129770	Verticillium dahliae	32.36	8.00e-70	257.00
IUUC-Vpa-130400	Vicugna pacos	37.00	3.00e-79	288.00
IUUC-Vvi-130991	Vitis vinifera	61.53	0.00e+00	728.00
IUUC-Xtr-132619	Xenopus tropicalis	36.23	3.00e-82	298.00
IUUC-Xma-134128	Xiphophorus maculatus	37.67	4.00e-86	311.00
IUUC-Yli-134521	Yarrowia lipolytica	34.77	2.00e-75	275.00
IUUC-Zma-135772	Zea mays	58.91	0.00e+00	670.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence