iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016440

Ensembl Protein ID

Bo3g122080.1

UniProt Accession

A0A0D3BGT3; A0A0D3BGT3_BRAOL

Protein Name

Protein HIRA

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo3g122080	Bo3g122080.1	Bo3g122080.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.70e-27	93.9	124	161
UBD/Beta-Prp	1.20e-44	154.2	16	206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v ++++ +d  +l+sGs D+t+++W++rtg ++
   Q: 124  GHTADVVDINWsPDdSMLASGSLDNTVHIWNMRTGICT 161
           8***********777********************985 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw.................d 80
           +i ++++ p+++ +atg+ d+++++w++++ ++           l++l +h + v++v++ ++g + ++gs+D++i+v                  d
   Q: 16   QIFSIDVQPNGERFATGGGDHKVRIWNMKSVDTdlqnldpkerlLATLRDHFGSVNCVRWAKHGRYVASGSDDHVIQVHerkpgsgttefgsgeapD 112
           5668999***********************99999********************************************888888888888888888 PP
   S: 81   lstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl 175
           +++ k v+tl+gh+++v+++++sp+++ l+sGs d+t+++w+++tg c   +l+gh ++v +v+++p g+ ++s s+D+tv +W+ +  ++ ++ 
   Q: 113  VENWKAVMTLRGHTADVVDINWSPDDSMLASGSLDNTVHIWNMRTGICTT-VLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWSMAHRT 206
           88***********************************************9.*********************************99666666554 PP

Organism

Brassica oleracea

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPVWVK HEGLQQIFSI DVQPNGERFA TGGGDHKVRI WNMKSVDTDL QNLDPKERLL 60
ATLRDHFGSV NCVRWAKHGR YVASGSDDHV IQVHERKPGS GTTEFGSGEA PDVENWKAVM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATTGCGG AGAAACCCGT ATGGGTAAAA CATGAAGGAT TGCAGCAGAT ATTCTCCATT 60
GATGTTCAAC CAAACGGTGA ACGCTTTGCC ACAGGCGGTG GTGATCACAA GGTCTCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0016569--P:covalent chromatin modification
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001039	Aegilops tauschii	62.85	0.00e+00	1240.00
IUUC-Aml-001723	Ailuropoda melanoleuca	35.16	2.00e-79	290.00
IUUC-Atr-003132	Amborella trichopoda	65.61	0.00e+00	1251.00
IUUC-Apl-003197	Anas platyrhynchos	35.14	3.00e-79	290.00
IUUC-Aca-004733	Anolis carolinensis	35.95	1.00e-83	304.00
IUUC-Aly-005446	Arabidopsis lyrata	85.16	0.00e+00	1715.00
IUUC-Ath-007627	Arabidopsis thaliana	81.42	0.00e+00	1698.00
IUUC-Ago-007766	Ashbya gossypii	34.74	3.00e-60	226.00
IUUC-Acl-008104	Aspergillus clavatus	33.59	3.00e-74	273.00
IUUC-Afl-008591	Aspergillus flavus	33.97	2.00e-73	270.00
IUUC-Afu-008781	Aspergillus fumigatus	32.12	3.00e-66	246.00
IUUC-Ani-009272	Aspergillus nidulans	29.55	1.00e-56	214.00
IUUC-Ang-009655	Aspergillus niger	32.82	5.00e-72	266.00
IUUC-Aor-010119	Aspergillus oryzae	33.14	3.00e-73	270.00
IUUC-Ate-010530	Aspergillus terreus	29.03	2.00e-56	214.00
IUUC-Bgr-012237	Blumeria graminis	34.36	7.00e-66	245.00
IUUC-Bta-013320	Bos taurus	34.87	4.00e-79	289.00
IUUC-Bci-013795	Botrytis cinerea	34.04	7.00e-72	265.00
IUUC-Bdi-014075	Brachypodium distachyon	65.36	0.00e+00	1280.00
IUUC-Bra-016651	Brassica rapa	97.06	0.00e+00	1912.00
IUUC-Cel-018692	Caenorhabditis elegans	29.74	8.00e-45	175.00
IUUC-Cja-018987	Callithrix jacchus	34.37	9.00e-72	265.00
IUUC-Cfa-020132	Canis familiaris	35.35	1.00e-79	291.00
IUUC-Cpo-021484	Cavia porcellus	41.37	1.00e-82	301.00
IUUC-Cre-022846	Chlamydomonas reinhardtii	35.99	6.00e-73	269.00
IUUC-Csa-023081	Chlorocebus sabaeus	35.78	1.00e-83	305.00
IUUC-Cin-025182	Ciona intestinalis	37.35	2.00e-83	304.00
IUUC-Csv-026154	Ciona savignyi	36.61	3.00e-82	300.00
IUUC-Cgl-026655	Colletotrichum gloeosporioides	31.35	4.00e-65	243.00
IUUC-Cne-026891	Cryptococcus neoformans	39.74	3.00e-82	299.00
IUUC-Cme-027349	Cyanidioschyzon merolae	28.86	2.00e-51	197.00
IUUC-Dre-027655	Danio rerio	41.52	2.00e-80	294.00
IUUC-Dno-029557	Dasypus novemcinctus	33.98	5.00e-68	252.00
IUUC-Dor-030687	Dipodomys ordii	36.22	3.00e-62	233.00
IUUC-Dse-031334	Dothistroma septosporum	33.78	9.00e-70	258.00
IUUC-Dme-031746	Drosophila melanogaster	39.42	1.00e-82	301.00
IUUC-Ete-032384	Echinops telfairi	31.66	1.00e-61	231.00
IUUC-Eca-033430	Equus caballus	41.36	1.00e-79	291.00
IUUC-Fca-036121	Felis catus	34.94	9.00e-80	291.00
IUUC-Fal-036817	Ficedula albicollis	34.81	2.00e-78	286.00
IUUC-Fox-037906	Fusarium oxysporum	35.68	5.00e-70	258.00
IUUC-Fso-038409	Fusarium solani	35.65	4.00e-68	253.00
IUUC-Gmo-039151	Gadus morhua	38.53	2.00e-81	296.00
IUUC-Ggr-040016	Gaeumannomyces graminis	35.70	5.00e-68	253.00
IUUC-Gga-040936	Gallus gallus	34.01	2.00e-83	304.00
IUUC-Gac-041405	Gasterosteus aculeatus	42.26	2.00e-78	287.00
IUUC-Gma-044252	Glycine max	70.99	0.00e+00	1390.00
IUUC-Ggo-045430	Gorilla gorilla	35.78	1.00e-83	304.00
IUUC-Hsa-046442	Homo sapiens	35.78	8.00e-84	305.00
IUUC-Hvu-047587	Hordeum vulgare	65.16	0.00e+00	1199.00
IUUC-Itr-048910	Ictidomys tridecemlineatus	42.04	2.00e-61	229.00
IUUC-Kpa-049145	Komagataella pastoris	32.15	3.00e-57	216.00
IUUC-Lch-050474	Latimeria chalumnae	41.12	5.00e-80	292.00
IUUC-Lpe-051209	Leersia perrieri	63.77	0.00e+00	1217.00
IUUC-Loc-052119	Lepisosteus oculatus	36.67	6.00e-80	292.00
IUUC-Lma-053237	Leptosphaeria maculans	25.52	7.00e-87	315.00
IUUC-Laf-053718	Loxodonta africana	36.42	4.00e-84	306.00
IUUC-Mcc-055621	Macaca mulatta	34.50	2.00e-71	263.00
IUUC-Meu-055914	Macropus eugenii	39.86	7.00e-53	202.00
IUUC-Mor-057090	Magnaporthe oryzae	34.40	4.00e-66	246.00
IUUC-Mpo-057364	Magnaporthe poae	35.70	1.00e-68	254.00
IUUC-Mtr-057744	Medicago truncatula	72.26	0.00e+00	1381.00
IUUC-Mla-058914	Melampsora laricipopulina	27.69	1.00e-82	300.00
IUUC-Mga-060181	Meleagris gallopavo	33.62	8.00e-80	291.00
IUUC-Mvi-060432	Microbotryum violaceum	32.40	2.00e-56	214.00
IUUC-Mmr-060871	Microcebus murinus	35.59	1.00e-82	301.00
IUUC-Mdo-062301	Monodelphis domestica	35.77	2.00e-83	304.00
IUUC-Mmu-063888	Mus musculus	35.40	3.00e-83	303.00
IUUC-Mac-064768	Musa acuminata	66.67	0.00e+00	1229.00
IUUC-Mpu-066732	Mustela putorius furo	35.16	1.00e-79	291.00
IUUC-Mlu-067542	Myotis lucifugus	35.99	1.00e-79	291.00
IUUC-Nfi-068396	Neosartorya fischeri	31.92	2.00e-65	244.00
IUUC-Ncr-068842	Neurospora crassa	36.30	6.00e-69	255.00
IUUC-Nle-070156	Nomascus leucogenys	35.97	2.00e-83	304.00
IUUC-Opr-070808	Ochotona princeps	39.46	1.00e-51	198.00
IUUC-Ont-072105	Oreochromis niloticus	34.74	8.00e-80	291.00
IUUC-Ocu-074962	Oryctolagus cuniculus	34.67	2.00e-79	290.00
IUUC-Oba-075178	Oryza barthii	66.28	0.00e+00	1215.00
IUUC-Obr-076399	Oryza brachyantha	64.95	0.00e+00	1241.00
IUUC-Ogu-078797	Oryza glumaepatula	66.28	0.00e+00	1215.00
IUUC-Oin-080085	Oryza indica	65.94	0.00e+00	1150.00
IUUC-Olo-081048	Oryza longistaminata	83.28	5.00e-161	562.00
IUUC-Ome-081324	Oryza meridionalis	66.74	0.00e+00	1213.00
IUUC-Oni-082548	Oryza nivara	66.60	0.00e+00	1217.00
IUUC-Opu-084008	Oryza punctata	80.93	0.00e+00	715.00
IUUC-Oru-084339	Oryza rufipogon	66.39	0.00e+00	1216.00
IUUC-Osa-085782	Oryza sativa	66.39	0.00e+00	1216.00
IUUC-Ola-087302	Oryzias latipes	36.76	5.00e-78	285.00
IUUC-Olu-087611	Ostreococcus lucimarinus	41.63	7.00e-113	401.00
IUUC-Oga-087935	Otolemur garnettii	41.10	1.00e-79	291.00
IUUC-Oar-089229	Ovis aries	36.64	5.00e-62	233.00
IUUC-Ptr-090715	Pan troglodytes	35.78	8.00e-84	305.00
IUUC-Pan-092318	Papio anubis	34.96	5.00e-81	295.00
IUUC-Psi-094053	Pelodiscus sinensis	35.08	1.00e-81	297.00
IUUC-Pno-094985	Phaeosphaeria nodorum	32.48	7.00e-60	225.00
IUUC-Ppa-095499	Physcomitrella patens	49.46	0.00e+00	890.00
IUUC-Pfo-096857	Poecilia formosa	41.27	1.00e-77	285.00
IUUC-Pab-098047	Pongo abelii	35.78	9.00e-84	305.00
IUUC-Pop-099587	Populus trichocarpa	70.64	0.00e+00	1380.00
IUUC-Pca-100558	Procavia capensis	48.47	2.00e-47	184.00
IUUC-Ppe-101261	Prunus persica	70.25	0.00e+00	1341.00
IUUC-Pva-102683	Pteropus vampyrus	35.29	2.00e-80	293.00
IUUC-Pgr-103660	Puccinia graminis	36.56	3.00e-58	220.00
IUUC-Ptt-103900	Puccinia triticina	37.16	1.00e-59	224.00
IUUC-Pte-104209	Pyrenophora teres	34.27	3.00e-70	259.00
IUUC-Pyt-104802	Pyrenophora triticirepentis	34.27	2.00e-69	257.00
IUUC-Rno-105566	Rattus norvegicus	35.59	2.00e-83	303.00
IUUC-Sce-106291	Saccharomyces cerevisiae	32.33	1.00e-64	241.00
IUUC-Sha-107514	Sarcophilus harrisii	33.53	2.00e-69	257.00
IUUC-Sja-107833	Schizosaccharomyces japonicus	33.40	7.00e-72	265.00
IUUC-Spo-108162	Schizosaccharomyces pombe	32.54	2.00e-71	263.00
IUUC-Smo-109186	Selaginella moellendorffii	49.95	0.00e+00	889.00
IUUC-Sit-110730	Setaria italica	65.53	0.00e+00	1226.00
IUUC-Sly-111547	Solanum lycopersicum	67.80	0.00e+00	1290.00
IUUC-Stu-112705	Solanum tuberosum	68.00	0.00e+00	1294.00
IUUC-Sar-113222	Sorex araneus	34.16	2.00e-73	270.00
IUUC-Sbi-114272	Sorghum bicolor	66.49	0.00e+00	1234.00
IUUC-Sre-115061	Sporisorium reilianum	33.06	6.00e-70	259.00
IUUC-Ssc-116364	Sus scrofa	34.61	4.00e-80	292.00
IUUC-Tgu-116645	Taeniopygia guttata	35.01	8.00e-79	288.00
IUUC-Tru-117590	Takifugu rubripes	36.49	1.00e-83	304.00
IUUC-Tsy-119212	Tarsius syrichta	41.84	2.00e-68	254.00
IUUC-Tni-119915	Tetraodon nigroviridis	37.92	7.00e-84	305.00
IUUC-Tca-121765	Theobroma cacao	70.33	0.00e+00	1387.00
IUUC-Tre-121887	Trichoderma reesei	32.71	9.00e-61	228.00
IUUC-Tvi-122262	Trichoderma virens	34.07	3.00e-59	223.00
IUUC-Tae-123009	Triticum aestivum	59.35	0.00e+00	764.00
IUUC-Tur-126483	Triticum urartu	65.20	0.00e+00	1266.00
IUUC-Tme-127202	Tuber melanosporum	29.46	2.00e-51	197.00
IUUC-Tbe-127350	Tupaia belangeri	35.58	2.00e-47	184.00
IUUC-Ttr-129077	Tursiops truncatus	31.57	3.00e-71	263.00
IUUC-Uma-129465	Ustilago maydis	32.08	3.00e-71	263.00
IUUC-Vda-129844	Verticillium dahliae	34.81	1.00e-67	251.00
IUUC-Vvi-131397	Vitis vinifera	71.50	0.00e+00	1389.00
IUUC-Xtr-132057	Xenopus tropicalis	35.70	8.00e-82	298.00
IUUC-Xma-134139	Xiphophorus maculatus	40.72	1.00e-67	250.00
IUUC-Yli-134424	Yarrowia lipolytica	34.83	6.00e-63	235.00
IUUC-Zma-135839	Zea mays	66.18	0.00e+00	1246.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence