• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Tag Content
iUUCD ID IUUC-Mpu-066141
Ensembl Protein ID ENSMPUP00000003867.1
UniProt Accession M3XXR6; M3XXR6_MUSPF
Genbank Protein ID ENSMPUP00000003867
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AEYP01017529
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMPUG00000003897.1 ENSMPUT00000003936.1 ENSMPUP00000003867.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 4.90e-11 42.1 168 189
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqq 22
    +++Q+++D+ELA++L++ ++++
   Q: 168 MEEQLKSDEELARKLSININNF 189
    89******************98 PP
   

Organism Mustela putorius furo
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPQNAIPS LSECLCRICV EILIEPVTLP CNHTLCNPCF QSTVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LVNMELWELI QKHYPKECKL RVSGQESEEI VDDCQPVRLL SKPGELRREY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mpu-066141|UBD,MIU|Mustela putorius furo
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAACCAGAG GGTATTATGC TAAGCAAAAT TAGTCAATCA GAGCAAAACA ATTATCTTAT 60
GATCTCACTG ATAAGTGGAA TTTAAGAAGA ACTCTAGAAA GCGACCTGAG AGGTTTGGTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mpu-066141|UBD,MIU|Mustela putorius furo
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 88.29 0.00e+00 886.00
IUUC-Atr-002992 Amborella trichopoda 38.57 8.00e-10 57.80
IUUC-Apl-003963 Anas platyrhynchos 47.83 5.00e-83 301.00
IUUC-Aca-004420 Anolis carolinensis 68.12 3.00e-46 179.00
IUUC-Ath-007019 Arabidopsis thaliana 41.33 9.00e-10 59.30
IUUC-Ame-011521 Astyanax mexicanus 50.27 5.00e-40 158.00
IUUC-Bta-013002 Bos taurus 76.35 0.00e+00 739.00
IUUC-Bol-016180 Brassica oleracea 40.28 6.00e-10 58.20
IUUC-Bra-017905 Brassica rapa 40.28 5.00e-10 58.50
IUUC-Cja-019945 Callithrix jacchus 74.35 0.00e+00 694.00
IUUC-Cfa-020533 Canis familiaris 85.49 0.00e+00 861.00
IUUC-Cpo-021643 Cavia porcellus 62.41 1.00e-147 516.00
IUUC-Csa-023638 Chlorocebus sabaeus 73.87 0.00e+00 721.00
IUUC-Cho-024319 Choloepus hoffmanni 74.91 0.00e+00 686.00
IUUC-Cin-025679 Ciona intestinalis 37.04 2.00e-19 89.70
IUUC-Csv-026052 Ciona savignyi 35.38 2.00e-19 88.60
IUUC-Dre-028519 Danio rerio 45.09 2.00e-36 146.00
IUUC-Dno-029294 Dasypus novemcinctus 78.18 0.00e+00 758.00
IUUC-Ete-032714 Echinops telfairi 53.14 2.00e-143 502.00
IUUC-Eca-033343 Equus caballus 81.98 0.00e+00 802.00
IUUC-Eeu-034633 Erinaceus europaeus 35.22 4.00e-25 108.00
IUUC-Fca-036251 Felis catus 85.94 0.00e+00 864.00
IUUC-Fal-037048 Ficedula albicollis 45.44 3.00e-86 312.00
IUUC-Gmo-039400 Gadus morhua 46.09 1.00e-30 124.00
IUUC-Gga-040444 Gallus gallus 41.46 1.00e-83 304.00
IUUC-Gac-041735 Gasterosteus aculeatus 49.17 4.00e-37 147.00
IUUC-Gma-044332 Glycine max 39.24 5.00e-12 65.50
IUUC-Ggo-044940 Gorilla gorilla 71.22 9.00e-140 489.00
IUUC-Hsa-046424 Homo sapiens 75.78 0.00e+00 704.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 75.00 0.00e+00 697.00
IUUC-Lch-050649 Latimeria chalumnae 39.76 1.00e-57 217.00
IUUC-Loc-051847 Lepisosteus oculatus 36.42 2.00e-54 206.00
IUUC-Laf-053938 Loxodonta africana 71.70 0.00e+00 750.00
IUUC-Mcc-055360 Macaca mulatta 73.69 0.00e+00 697.00
IUUC-Meu-056684 Macropus eugenii 50.52 7.00e-117 414.00
IUUC-Mtr-058007 Medicago truncatula 39.24 7.00e-12 64.70
IUUC-Mga-059699 Meleagris gallopavo 43.51 2.00e-90 326.00
IUUC-Mmr-060779 Microcebus murinus 78.01 0.00e+00 789.00
IUUC-Mdo-062225 Monodelphis domestica 54.87 2.00e-122 432.00
IUUC-Mmu-064239 Mus musculus 66.32 5.00e-170 590.00
IUUC-Mlu-067945 Myotis lucifugus 78.98 0.00e+00 763.00
IUUC-Nle-069769 Nomascus leucogenys 76.13 0.00e+00 711.00
IUUC-Opr-070905 Ochotona princeps 63.87 8.00e-176 610.00
IUUC-Ont-071477 Oreochromis niloticus 53.33 4.00e-36 145.00
IUUC-Oan-073531 Ornithorhynchus anatinus 44.95 6.00e-64 238.00
IUUC-Ocu-073832 Oryctolagus cuniculus 70.86 0.00e+00 662.00
IUUC-Ola-086478 Oryzias latipes 48.44 4.00e-33 133.00
IUUC-Oga-088318 Otolemur garnettii 76.52 0.00e+00 747.00
IUUC-Oar-089647 Ovis aries 75.65 0.00e+00 737.00
IUUC-Ptr-090516 Pan troglodytes 75.96 0.00e+00 717.00
IUUC-Pan-092302 Papio anubis 72.87 0.00e+00 692.00
IUUC-Psi-093604 Pelodiscus sinensis 42.86 1.00e-91 330.00
IUUC-Pfo-096441 Poecilia formosa 52.63 1.00e-38 153.00
IUUC-Pab-097729 Pongo abelii 74.91 0.00e+00 697.00
IUUC-Pca-100552 Procavia capensis 62.63 1.00e-116 413.00
IUUC-Pva-102780 Pteropus vampyrus 80.49 0.00e+00 805.00
IUUC-Rno-105461 Rattus norvegicus 66.20 1.00e-170 592.00
IUUC-Sha-106809 Sarcophilus harrisii 56.75 6.00e-142 497.00
IUUC-Sly-111317 Solanum lycopersicum 38.00 4.00e-14 72.80
IUUC-Stu-112783 Solanum tuberosum 34.58 3.00e-13 69.70
IUUC-Sar-113579 Sorex araneus 62.13 2.00e-164 572.00
IUUC-Tgu-117187 Taeniopygia guttata 65.08 2.00e-55 208.00
IUUC-Tru-118182 Takifugu rubripes 51.09 8.00e-33 134.00
IUUC-Tsy-119217 Tarsius syrichta 60.90 3.00e-73 268.00
IUUC-Tni-120205 Tetraodon nigroviridis 53.90 2.00e-41 162.00
IUUC-Tvi-122557 Trichoderma virens 31.71 7.00e-06 45.10
IUUC-Tbe-127622 Tupaia belangeri 74.17 0.00e+00 753.00
IUUC-Ttr-128988 Tursiops truncatus 83.42 0.00e+00 828.00
IUUC-Vpa-130302 Vicugna pacos 76.30 2.00e-146 512.00
IUUC-Vvi-131424 Vitis vinifera 38.16 6.00e-10 58.20
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved