iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016952

Ensembl Protein ID

Bra003599.1-P

UniProt Accession

M4CHB6; M4CHB6_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra003599	Bra003599.1	Bra003599.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.10e-25	89.0	214	255
ULD/UDP/UBQ/UBQ_PIM	1.20e-21	77.4	69	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e++++ql++MG   +d+e++ +aLraa+nn+e+Av+yL++g
   Q: 214  LEPLVQQLMDMGggsWDKETVTRALRAAHNNPERAVDYLYSG 255
           69*************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktl g++fe++v+++dt+ ++K++i++++g   +p+ qq LI++Gk+LkD+ttL e+++ ++ +++++++ks+
   Q: 69   MKLTVKTLMGRQFEIRVQSSDTIMAVKKNIEDSQGkdnYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSR 146
           99************************************************************************9985 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MRHVDSTWRS IAAFKIRNAL CHCLTTVGLS VSVALDLFNY YCLFRSLSPS ILAGFSPSQR 60
RRFHILQTMK LTVKTLMGRQ FEIRVQSSDT IMAVKKNIED SQGKDNYPCG QQLLIHNGKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGTCACG TGGATAGCAC ATGGAGATCT ATTGCCGCGT TTAAAATCCG GAACGCACTG 60
TGTCACTGTT TAACTACGGT CGGCTTGTCT GTAAGCGTCG CCCTCGATCT CTTCAATTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006674	Arabidopsis thaliana	71.82	4.00e-145	507.00
IUUC-Bol-016300	Brassica oleracea	93.09	1.00e-169	588.00
IUUC-Cho-024814	Choloepus hoffmanni	34.22	6.00e-22	97.80
IUUC-Csv-025823	Ciona savignyi	31.56	7.00e-30	123.00
IUUC-Cne-027056	Cryptococcus neoformans	40.87	6.00e-14	71.60
IUUC-Fox-037960	Fusarium oxysporum	49.61	3.00e-22	99.00
IUUC-Fso-038107	Fusarium solani	50.41	3.00e-21	95.90
IUUC-Ggr-040116	Gaeumannomyces graminis	50.00	3.00e-22	99.40
IUUC-Mpo-057609	Magnaporthe poae	50.00	3.00e-21	95.50
IUUC-Mga-060060	Meleagris gallopavo	33.07	6.00e-03	34.70
IUUC-Opr-070234	Ochotona princeps	44.64	2.00e-09	56.20
IUUC-Ogu-078023	Oryza glumaepatula	61.38	9.00e-99	353.00
IUUC-Olo-080559	Oryza longistaminata	64.86	7.00e-117	413.00
IUUC-Oni-082812	Oryza nivara	62.06	4.00e-111	394.00
IUUC-Oru-084942	Oryza rufipogon	60.46	1.00e-100	359.00
IUUC-Olu-087843	Ostreococcus lucimarinus	38.25	1.00e-49	189.00
IUUC-Pno-095064	Phaeosphaeria nodorum	31.65	1.00e-23	103.00
IUUC-Ptt-103717	Puccinia triticina	46.32	1.00e-26	113.00
IUUC-Pte-104303	Pyrenophora teres	51.16	1.00e-22	100.00
IUUC-Tru-118651	Takifugu rubripes	33.08	3.00e-45	175.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence