iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lma-053290

Ensembl Protein ID

CBX92655

UniProt Accession

E4ZN52; E4ZN52_LEPMJ

Genbank Protein ID

CBX92655.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

FP929094

Gene Name

ERB1; LEMA_P053610.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LEMA_P053610.1	CBX92655	CBX92655

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-13	48.2	440	476

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtll.vsGsdDgtikvWDlrtgvl 35
           g++++v+c++  + +++ +sG+dDg +++W+l tg++
   Q: 440  GQEGRVRCISIdPQGIFvASGGDDGYVRIWELLTGRQ 476
           57899******765775499************99987 PP

Organism

Leptosphaeria maculans

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSVNPRKRKV VTRPVPPPSD SEEELADGLL EGILSHSEDD SEDSQAEEED EEDTDASSVI 60
EGLSDEDEEE DEEDDPDSDE KQIREQIRNL NTSGASLQRN KGQATHDMDL DAGANGGLDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTGTCA ATCCGCGCAA GAGAAAGGTC GTGACCCGTC CAGTGCCCCC GCCGAGCGAT 60
TCGGAGGAAG AACTTGCCGA TGGGCTTCTG GAGGGCATCT TGTCGCATTC TGAAGACGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	36.81	3.00e-100	357.00
IUUC-Aml-001507	Ailuropoda melanoleuca	41.07	8.00e-129	452.00
IUUC-Atr-003141	Amborella trichopoda	36.57	3.00e-67	247.00
IUUC-Apl-003545	Anas platyrhynchos	39.63	2.00e-116	411.00
IUUC-Aly-005649	Arabidopsis lyrata	42.01	3.00e-136	477.00
IUUC-Ath-007625	Arabidopsis thaliana	41.71	2.00e-129	454.00
IUUC-Ago-007958	Ashbya gossypii	52.15	0.00e+00	717.00
IUUC-Acl-008344	Aspergillus clavatus	64.84	0.00e+00	843.00
IUUC-Afl-008616	Aspergillus flavus	65.99	0.00e+00	871.00
IUUC-Afu-009083	Aspergillus fumigatus	65.16	0.00e+00	820.00
IUUC-Ani-009365	Aspergillus nidulans	65.29	0.00e+00	855.00
IUUC-Ang-009796	Aspergillus niger	63.38	0.00e+00	862.00
IUUC-Aor-010015	Aspergillus oryzae	65.99	0.00e+00	871.00
IUUC-Ate-010537	Aspergillus terreus	65.12	0.00e+00	895.00
IUUC-Ame-011767	Astyanax mexicanus	50.41	1.00e-66	244.00
IUUC-Bgr-012286	Blumeria graminis	67.55	0.00e+00	934.00
IUUC-Bta-013569	Bos taurus	42.65	3.00e-140	490.00
IUUC-Bci-013820	Botrytis cinerea	70.47	0.00e+00	912.00
IUUC-Bdi-014477	Brachypodium distachyon	40.69	1.00e-131	462.00
IUUC-Bol-016099	Brassica oleracea	42.41	8.00e-136	476.00
IUUC-Bra-017174	Brassica rapa	42.57	6.00e-137	480.00
IUUC-Cel-018201	Caenorhabditis elegans	38.59	3.00e-115	407.00
IUUC-Cja-019009	Callithrix jacchus	43.45	1.00e-84	305.00
IUUC-Cfa-020173	Canis familiaris	39.53	2.00e-127	447.00
IUUC-Cpo-021796	Cavia porcellus	42.65	2.00e-140	491.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	41.59	7.00e-123	432.00
IUUC-Csa-023440	Chlorocebus sabaeus	43.29	1.00e-147	515.00
IUUC-Cin-025782	Ciona intestinalis	43.54	4.00e-148	517.00
IUUC-Csv-026352	Ciona savignyi	40.03	8.00e-137	479.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	60.77	0.00e+00	750.00
IUUC-Cne-027004	Cryptococcus neoformans	49.08	0.00e+00	632.00
IUUC-Cme-027242	Cyanidioschyzon merolae	34.81	1.00e-111	395.00
IUUC-Dre-028658	Danio rerio	44.68	2.00e-148	518.00
IUUC-Dno-028883	Dasypus novemcinctus	43.13	4.00e-141	493.00
IUUC-Dor-031031	Dipodomys ordii	42.64	2.00e-144	504.00
IUUC-Dse-031443	Dothistroma septosporum	62.10	0.00e+00	832.00
IUUC-Dme-031786	Drosophila melanogaster	41.82	7.00e-147	512.00
IUUC-Eca-033677	Equus caballus	43.29	1.00e-141	494.00
IUUC-Eeu-035310	Erinaceus europaeus	39.38	5.00e-106	376.00
IUUC-Fca-035888	Felis catus	42.81	7.00e-143	499.00
IUUC-Fal-037438	Ficedula albicollis	42.93	7.00e-115	405.00
IUUC-Fox-037973	Fusarium oxysporum	67.50	0.00e+00	923.00
IUUC-Fso-038187	Fusarium solani	68.25	0.00e+00	932.00
IUUC-Gmo-039114	Gadus morhua	41.57	1.00e-131	461.00
IUUC-Ggr-039746	Gaeumannomyces graminis	66.18	0.00e+00	938.00
IUUC-Gga-040631	Gallus gallus	41.93	3.00e-83	300.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.03	4.00e-141	493.00
IUUC-Gma-044215	Glycine max	42.88	6.00e-137	479.00
IUUC-Ggo-045587	Gorilla gorilla	42.97	2.00e-147	514.00
IUUC-Hsa-046319	Homo sapiens	42.97	2.00e-147	514.00
IUUC-Hvu-047526	Hordeum vulgare	39.94	6.00e-125	439.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	42.30	2.00e-142	498.00
IUUC-Kpa-049221	Komagataella pastoris	48.82	0.00e+00	670.00
IUUC-Lch-049640	Latimeria chalumnae	42.97	1.00e-151	528.00
IUUC-Lpe-051135	Leersia perrieri	40.35	3.00e-65	241.00
IUUC-Loc-051930	Lepisosteus oculatus	43.92	1.00e-151	528.00
IUUC-Laf-053903	Loxodonta africana	39.27	9.00e-122	429.00
IUUC-Mcc-055471	Macaca mulatta	43.13	7.00e-148	516.00
IUUC-Meu-056190	Macropus eugenii	43.44	5.00e-145	506.00
IUUC-Mor-057135	Magnaporthe oryzae	68.32	0.00e+00	916.00
IUUC-Mpo-057475	Magnaporthe poae	64.87	0.00e+00	902.00
IUUC-Mtr-058689	Medicago truncatula	39.91	9.00e-122	429.00
IUUC-Mla-059149	Melampsora laricipopulina	49.40	0.00e+00	633.00
IUUC-Mga-059645	Meleagris gallopavo	37.60	3.00e-48	183.00
IUUC-Mvi-060485	Microbotryum violaceum	46.99	7.00e-157	547.00
IUUC-Mmr-061674	Microcebus murinus	42.65	5.00e-138	483.00
IUUC-Mdo-062973	Monodelphis domestica	42.81	1.00e-150	525.00
IUUC-Mmu-064180	Mus musculus	43.29	7.00e-147	512.00
IUUC-Mac-064535	Musa acuminata	36.79	4.00e-77	281.00
IUUC-Mpu-066406	Mustela putorius furo	42.81	2.00e-144	504.00
IUUC-Mlu-067795	Myotis lucifugus	43.29	6.00e-136	476.00
IUUC-Nfi-068516	Neosartorya fischeri	63.25	0.00e+00	795.00
IUUC-Ncr-068767	Neurospora crassa	66.47	0.00e+00	855.00
IUUC-Opr-071084	Ochotona princeps	40.00	5.00e-54	203.00
IUUC-Ont-071614	Oreochromis niloticus	42.83	3.00e-148	516.00
IUUC-Oba-075980	Oryza barthii	41.21	1.00e-66	246.00
IUUC-Obr-076799	Oryza brachyantha	41.76	2.00e-132	464.00
IUUC-Ogl-077134	Oryza glaberrima	41.13	4.00e-125	440.00
IUUC-Ogu-078655	Oryza glumaepatula	39.56	9.00e-118	416.00
IUUC-Oin-079654	Oryza indica	40.72	4.00e-125	440.00
IUUC-Olo-080706	Oryza longistaminata	41.67	4.00e-66	244.00
IUUC-Ome-081716	Oryza meridionalis	41.38	3.00e-66	244.00
IUUC-Oni-082508	Oryza nivara	38.30	4.00e-112	397.00
IUUC-Opu-083707	Oryza punctata	41.67	6.00e-66	243.00
IUUC-Oru-084453	Oryza rufipogon	41.67	4.00e-66	244.00
IUUC-Osa-085811	Oryza sativa	40.97	9.00e-125	439.00
IUUC-Ola-087361	Oryzias latipes	44.50	4.00e-152	530.00
IUUC-Oga-088015	Otolemur garnettii	42.50	5.00e-147	513.00
IUUC-Oar-090058	Ovis aries	50.90	2.00e-47	181.00
IUUC-Ptr-090631	Pan troglodytes	40.00	6.00e-57	213.00
IUUC-Pan-092306	Papio anubis	43.22	1.00e-146	511.00
IUUC-Pma-094622	Petromyzon marinus	44.55	2.00e-155	540.00
IUUC-Pno-094794	Phaeosphaeria nodorum	77.19	0.00e+00	1172.00
IUUC-Ppa-095528	Physcomitrella patens	35.00	4.00e-73	267.00
IUUC-Pfo-096682	Poecilia formosa	43.57	1.00e-153	535.00
IUUC-Pab-097939	Pongo abelii	43.10	2.00e-131	461.00
IUUC-Pop-099043	Populus trichocarpa	41.80	4.00e-121	426.00
IUUC-Pca-100333	Procavia capensis	41.89	4.00e-140	490.00
IUUC-Ppe-102078	Prunus persica	41.80	6.00e-130	456.00
IUUC-Pgr-103525	Puccinia graminis	49.09	2.00e-169	587.00
IUUC-Ptt-103929	Puccinia triticina	48.60	1.00e-161	561.00
IUUC-Pte-104029	Pyrenophora teres	86.84	0.00e+00	1296.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	86.20	0.00e+00	1320.00
IUUC-Rno-105248	Rattus norvegicus	43.29	9.00e-147	512.00
IUUC-Sce-106381	Saccharomyces cerevisiae	51.40	0.00e+00	714.00
IUUC-Sha-106519	Sarcophilus harrisii	43.17	8.00e-150	522.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	44.91	1.00e-153	535.00
IUUC-Spo-108071	Schizosaccharomyces pombe	45.81	3.00e-160	556.00
IUUC-Smo-109604	Selaginella moellendorffii	41.31	2.00e-117	414.00
IUUC-Sit-110551	Setaria italica	41.35	2.00e-128	451.00
IUUC-Sly-110970	Solanum lycopersicum	43.52	1.00e-68	251.00
IUUC-Stu-112593	Solanum tuberosum	43.44	5.00e-137	479.00
IUUC-Sar-113123	Sorex araneus	47.56	4.00e-61	226.00
IUUC-Sbi-113945	Sorghum bicolor	40.57	2.00e-130	457.00
IUUC-Sre-115188	Sporisorium reilianum	45.44	8.00e-164	569.00
IUUC-Ssc-115352	Sus scrofa	42.65	9.00e-142	495.00
IUUC-Tru-117685	Takifugu rubripes	44.65	2.00e-153	534.00
IUUC-Tni-119982	Tetraodon nigroviridis	44.09	5.00e-148	516.00
IUUC-Tca-121664	Theobroma cacao	40.78	2.00e-137	481.00
IUUC-Tre-122229	Trichoderma reesei	66.32	0.00e+00	816.00
IUUC-Tvi-122576	Trichoderma virens	67.81	0.00e+00	834.00
IUUC-Tae-124110	Triticum aestivum	40.00	9.00e-118	416.00
IUUC-Tur-126781	Triticum urartu	39.26	2.00e-57	215.00
IUUC-Tme-127080	Tuber melanosporum	65.02	0.00e+00	863.00
IUUC-Ttr-128514	Tursiops truncatus	38.85	4.00e-85	307.00
IUUC-Uma-129556	Ustilago maydis	45.56	2.00e-161	561.00
IUUC-Vda-129715	Verticillium dahliae	67.54	0.00e+00	915.00
IUUC-Vvi-131211	Vitis vinifera	40.19	4.00e-120	423.00
IUUC-Xma-133883	Xiphophorus maculatus	42.95	9.00e-147	512.00
IUUC-Yli-134438	Yarrowia lipolytica	52.09	0.00e+00	695.00
IUUC-Zma-135341	Zea mays	36.89	9.00e-119	419.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence