• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Tag Content
UUCD2 ID IUUC-Sbi-113945
UUCD1 version UUC-SoB-00587
Ensembl Protein ID Sb03g013640.1
UniProt Accession C5XJT9; C5XJT9_SORBI
Genbank Protein ID EES00715.1
Protein Name Ribosome biogenesis protein BOP1 homolog
Genbank Nucleotide ID CM000762
Gene Name SORBI_003G156500
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb03g013640 Sb03g013640.1 Sb03g013640.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.50e-13 48.6 346 384
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt++v +++   s+  l+sGs Dgti+vW++ tg++lk
   Q: 346  GHTSPVKSISVeiSGQWLASGSCDGTIRVWEVETGRCLK 384
           8********999988899*******************97 PP
   
Organism Sorghum bicolor
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MGHSDGEHVH EGDDLSADDS SWSDGVWSED GDEESLSFED SGEGSGSDGE SDEAAAAEES 60
DSSEDEVAPR NTVGDVPLEW YKDEEHIGYD IDGRKIKKRD REGRIEAYLR NADDAKNWRK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sbi-113945|E3,WD_repeat|Sorghum bicolor
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGGCCACA GCGACGGAGA GCATGTGCAC GAGGGCGACG ACCTCTCCGC CGACGACTCT 60
TCGTGGAGCG ACGGCGTCTG GTCCGAGGAC GGCGATGAGG TGGGAGAGGT TCTTTTTATG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sbi-113945|E3,WD_repeat|Sorghum bicolor
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG sbi:SORBI_03g013640
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 78.52 0.00e+00 924.00
IUUC-Aml-001507 Ailuropoda melanoleuca 41.64 8.00e-132 463.00
IUUC-Atr-003141 Amborella trichopoda 65.08 7.00e-161 559.00
IUUC-Apl-003545 Anas platyrhynchos 42.26 3.00e-125 441.00
IUUC-Aly-005649 Arabidopsis lyrata 64.98 0.00e+00 840.00
IUUC-Ath-007625 Arabidopsis thaliana 63.30 0.00e+00 818.00
IUUC-Ago-007958 Ashbya gossypii 39.45 4.00e-135 474.00
IUUC-Acl-008344 Aspergillus clavatus 41.45 3.00e-120 425.00
IUUC-Afl-008616 Aspergillus flavus 38.43 1.00e-120 426.00
IUUC-Afu-009083 Aspergillus fumigatus 41.05 7.00e-116 410.00
IUUC-Ani-009365 Aspergillus nidulans 40.25 5.00e-122 431.00
IUUC-Ang-009796 Aspergillus niger 40.40 2.00e-119 422.00
IUUC-Aor-010015 Aspergillus oryzae 38.43 1.00e-120 426.00
IUUC-Ate-010537 Aspergillus terreus 40.37 5.00e-124 437.00
IUUC-Ame-011767 Astyanax mexicanus 47.95 2.00e-67 247.00
IUUC-Bgr-012286 Blumeria graminis 42.97 3.00e-137 481.00
IUUC-Bta-013569 Bos taurus 44.07 5.00e-146 510.00
IUUC-Bci-013820 Botrytis cinerea 41.96 4.00e-126 444.00
IUUC-Bdi-014895 Brachypodium distachyon 88.25 0.00e+00 1108.00
IUUC-Bol-016099 Brassica oleracea 66.50 0.00e+00 873.00
IUUC-Bra-017174 Brassica rapa 66.40 0.00e+00 882.00
IUUC-Cel-018201 Caenorhabditis elegans 40.16 1.00e-122 433.00
IUUC-Cja-019009 Callithrix jacchus 39.67 3.00e-125 441.00
IUUC-Cfa-020173 Canis familiaris 40.58 1.00e-133 469.00
IUUC-Cpo-021796 Cavia porcellus 43.85 2.00e-145 508.00
IUUC-Cre-022650 Chlamydomonas reinhardtii 48.40 5.00e-165 573.00
IUUC-Csa-023440 Chlorocebus sabaeus 43.73 2.00e-149 521.00
IUUC-Cin-025782 Ciona intestinalis 44.70 3.00e-151 528.00
IUUC-Csv-026352 Ciona savignyi 42.38 2.00e-142 498.00
IUUC-Cgl-026393 Colletotrichum gloeosporioides 36.74 1.00e-103 369.00
IUUC-Cne-027004 Cryptococcus neoformans 42.38 1.00e-149 522.00
IUUC-Cme-027242 Cyanidioschyzon merolae 33.92 2.00e-103 369.00
IUUC-Dre-028658 Danio rerio 47.01 1.00e-159 555.00
IUUC-Dno-028883 Dasypus novemcinctus 43.78 1.00e-147 516.00
IUUC-Dor-031031 Dipodomys ordii 42.39 3.00e-146 511.00
IUUC-Dse-031443 Dothistroma septosporum 38.20 9.00e-120 423.00
IUUC-Dme-031786 Drosophila melanogaster 42.77 2.00e-151 528.00
IUUC-Eca-033677 Equus caballus 44.00 4.00e-145 507.00
IUUC-Eeu-035310 Erinaceus europaeus 40.08 5.00e-108 384.00
IUUC-Fca-035888 Felis catus 42.10 1.00e-140 492.00
IUUC-Fal-037438 Ficedula albicollis 45.15 2.00e-129 454.00
IUUC-Fox-037973 Fusarium oxysporum 41.67 2.00e-139 489.00
IUUC-Fso-038187 Fusarium solani 40.88 1.00e-136 479.00
IUUC-Gmo-039114 Gadus morhua 42.70 4.00e-138 484.00
IUUC-Ggr-039746 Gaeumannomyces graminis 41.60 2.00e-141 495.00
IUUC-Gga-040631 Gallus gallus 48.39 4.00e-93 333.00
IUUC-Gac-042582 Gasterosteus aculeatus 43.50 1.00e-141 495.00
IUUC-Gma-044215 Glycine max 63.95 0.00e+00 852.00
IUUC-Ggo-045587 Gorilla gorilla 43.57 1.00e-148 519.00
IUUC-Hsa-046319 Homo sapiens 43.57 1.00e-148 519.00
IUUC-Hvu-047526 Hordeum vulgare 81.66 0.00e+00 1042.00
IUUC-Itr-048683 Ictidomys tridecemlineatus 43.64 7.00e-147 513.00
IUUC-Kpa-049221 Komagataella pastoris 39.91 4.00e-129 454.00
IUUC-Lch-049640 Latimeria chalumnae 46.28 1.00e-163 569.00
IUUC-Lpe-051135 Leersia perrieri 83.99 0.00e+00 996.00
IUUC-Loc-051930 Lepisosteus oculatus 47.57 1.00e-164 572.00
IUUC-Lma-053290 Leptosphaeria maculans 41.04 2.00e-126 445.00
IUUC-Laf-053903 Loxodonta africana 41.29 9.00e-129 453.00
IUUC-Mcc-055471 Macaca mulatta 43.57 6.00e-149 520.00
IUUC-Meu-056190 Macropus eugenii 44.21 1.00e-145 509.00
IUUC-Mor-057135 Magnaporthe oryzae 41.67 7.00e-133 467.00
IUUC-Mpo-057475 Magnaporthe poae 40.82 1.00e-132 466.00
IUUC-Mtr-058689 Medicago truncatula 61.49 0.00e+00 796.00
IUUC-Mla-059149 Melampsora laricipopulina 41.27 8.00e-137 479.00
IUUC-Mga-059645 Meleagris gallopavo 42.74 3.00e-54 204.00
IUUC-Mvi-060485 Microbotryum violaceum 41.34 3.00e-128 452.00
IUUC-Mmr-061674 Microcebus murinus 44.07 1.00e-145 509.00
IUUC-Mdo-062973 Monodelphis domestica 43.82 3.00e-150 524.00
IUUC-Mmu-064180 Mus musculus 43.48 7.00e-148 516.00
IUUC-Mac-064535 Musa acuminata 70.88 0.00e+00 671.00
IUUC-Mpu-066406 Mustela putorius furo 43.89 8.00e-150 523.00
IUUC-Mlu-067795 Myotis lucifugus 43.32 5.00e-138 484.00
IUUC-Nfi-068516 Neosartorya fischeri 41.20 1.00e-109 390.00
IUUC-Ncr-068767 Neurospora crassa 41.29 1.00e-124 439.00
IUUC-Opr-071084 Ochotona princeps 45.42 4.00e-59 221.00
IUUC-Ont-071614 Oreochromis niloticus 43.27 6.00e-153 533.00
IUUC-Oba-075980 Oryza barthii 82.67 0.00e+00 1014.00
IUUC-Obr-076799 Oryza brachyantha 86.78 0.00e+00 1120.00
IUUC-Ogl-077134 Oryza glaberrima 86.93 0.00e+00 1090.00
IUUC-Ogu-078655 Oryza glumaepatula 83.26 0.00e+00 1049.00
IUUC-Oin-079654 Oryza indica 87.08 0.00e+00 1070.00
IUUC-Olo-080706 Oryza longistaminata 82.97 0.00e+00 1022.00
IUUC-Ome-081716 Oryza meridionalis 68.38 0.00e+00 788.00
IUUC-Oni-082508 Oryza nivara 81.23 0.00e+00 1013.00
IUUC-Opu-083707 Oryza punctata 82.82 0.00e+00 1009.00
IUUC-Oru-084453 Oryza rufipogon 82.97 0.00e+00 1022.00
IUUC-Osa-085811 Oryza sativa 86.78 0.00e+00 1089.00
IUUC-Ola-087361 Oryzias latipes 45.89 5.00e-156 544.00
IUUC-Oga-088015 Otolemur garnettii 44.10 1.00e-151 529.00
IUUC-Oar-090058 Ovis aries 48.45 3.00e-45 175.00
IUUC-Ptr-090631 Pan troglodytes 41.96 3.00e-54 204.00
IUUC-Pan-092306 Papio anubis 43.82 4.00e-149 520.00
IUUC-Pma-094622 Petromyzon marinus 45.69 4.00e-161 560.00
IUUC-Pno-094794 Phaeosphaeria nodorum 37.70 6.00e-117 414.00
IUUC-Ppa-095528 Physcomitrella patens 57.99 2.00e-153 535.00
IUUC-Pfo-096682 Poecilia formosa 44.93 2.00e-154 538.00
IUUC-Pab-097939 Pongo abelii 43.49 2.00e-134 471.00
IUUC-Pop-099043 Populus trichocarpa 69.27 0.00e+00 809.00
IUUC-Pca-100333 Procavia capensis 43.74 5.00e-146 510.00
IUUC-Ppe-102078 Prunus persica 64.51 0.00e+00 817.00
IUUC-Pgr-103525 Puccinia graminis 41.27 8.00e-127 447.00
IUUC-Ptt-103929 Puccinia triticina 41.10 1.00e-121 430.00
IUUC-Pte-104029 Pyrenophora teres 40.53 2.00e-135 475.00
IUUC-Pyt-104446 Pyrenophora triticirepentis 40.38 5.00e-135 474.00
IUUC-Rno-105248 Rattus norvegicus 44.07 1.00e-147 516.00
IUUC-Sce-106381 Saccharomyces cerevisiae 39.27 2.00e-134 472.00
IUUC-Sha-106519 Sarcophilus harrisii 45.10 1.00e-151 529.00
IUUC-Sja-107908 Schizosaccharomyces japonicus 39.43 7.00e-127 447.00
IUUC-Spo-108071 Schizosaccharomyces pombe 40.66 2.00e-127 449.00
IUUC-Smo-109604 Selaginella moellendorffii 58.83 0.00e+00 740.00
IUUC-Sit-109742 Setaria italica 94.13 0.00e+00 1234.00
IUUC-Sly-110970 Solanum lycopersicum 72.89 3.00e-149 521.00
IUUC-Stu-112593 Solanum tuberosum 68.35 0.00e+00 891.00
IUUC-Sar-113123 Sorex araneus 38.84 6.00e-62 229.00
IUUC-Sre-115188 Sporisorium reilianum 40.15 6.00e-127 447.00
IUUC-Ssc-115352 Sus scrofa 43.20 1.00e-148 519.00
IUUC-Tru-117685 Takifugu rubripes 45.65 1.00e-154 539.00
IUUC-Tni-119982 Tetraodon nigroviridis 45.03 3.00e-151 528.00
IUUC-Tca-121664 Theobroma cacao 69.38 0.00e+00 892.00
IUUC-Tre-122229 Trichoderma reesei 41.99 3.00e-126 444.00
IUUC-Tvi-122576 Trichoderma virens 42.23 1.00e-128 452.00
IUUC-Tae-125703 Triticum aestivum 84.55 0.00e+00 1031.00
IUUC-Tur-126781 Triticum urartu 78.69 0.00e+00 909.00
IUUC-Tme-127080 Tuber melanosporum 43.59 7.00e-148 516.00
IUUC-Ttr-128514 Tursiops truncatus 41.28 2.00e-91 328.00
IUUC-Uma-129556 Ustilago maydis 39.73 1.00e-123 436.00
IUUC-Vda-129715 Verticillium dahliae 42.70 2.00e-134 472.00
IUUC-Vvi-131211 Vitis vinifera 66.22 0.00e+00 835.00
IUUC-Xma-133883 Xiphophorus maculatus 44.52 7.00e-150 523.00
IUUC-Yli-134438 Yarrowia lipolytica 40.28 3.00e-124 438.00
IUUC-Zma-135341 Zea mays 83.76 0.00e+00 1132.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved