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Tag Content
UUCD2 ID IUUC-Sbi-114052
UUCD1 version UUC-SoB-01472
Ensembl Protein ID Sb10g023020.1
UniProt Accession C5Z584; C5Z584_SORBI
Genbank Protein ID EER88584.2
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID CM000769
Gene Name SORBI_010G178600
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb10g023020 Sb10g023020.1 Sb10g023020.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.90e-34 116.4 186 227
UBD/Beta-Prp 7.50e-66 223.1 17 291
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 186  GHSKGVNCVDYftgGDrPYLITGSDDQTAKVWDYQTKSCVQT 227
           8********966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           +++++++v+ +p +++++++ ++g++ +w+++t+++++s++  e +v++ kf+ ++++ v g++D++i+v++++t + v  +++h+d++++++++p
   Q: 17   RSERVKSVDLHPTEPWIMSSLYSGSVCIWNYQTQTMVKSFEVSELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKLFEAHTDYIRCVAVHP 112
           5678999***************************************************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvs 197
           +  +++s s+d  i++wd+++g+   ++++gh++ v+ ++++p++ n ++s+slDrtv++W+l + +   tl g h + v++++     ++++l++
   Q: 113  TLPYVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQITFNPKDtNTFASASLDRTVKIWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLIT 207
           ***********************9999**********************************************9.*********7445566***** PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 208  GSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIIMTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 291
           ************************************************************************999666666654 PP
   
Organism Sorghum bicolor
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MMMQPLRLEI KRKLAQRSER VKSVDLHPTE PWIMSSLYSG SVCIWNYQTQ TMVKSFEVSE 60
LPVRSAKFIA RKQWVVAGAD DMFIRVYNYN TMDKVKLFEA HTDYIRCVAV HPTLPYVLSS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sbi-114052|E3,WD_repeat;UBD,Beta-Prp|Sorghum bicolor
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGATGATGC AGCCGCTCCG GTTAGAGATC AAGGTAATTT CGAGAATACC CGGCTGAATC 60
CGGTTAATTT GGCAGTGCCT TTACTTGTCA CTATGAGGTC GTTTCTCTAA TGGTGATATG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sbi-114052|E3,WD_repeat;UBD,Beta-Prp|Sorghum bicolor
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
KEGG sbi:SORBI_10g023026
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002154 Ailuropoda melanoleuca 63.29 0.00e+00 1115.00
IUUC-Apl-003976 Anas platyrhynchos 63.16 0.00e+00 1118.00
IUUC-Ago-007914 Ashbya gossypii 46.36 0.00e+00 723.00
IUUC-Ame-010922 Astyanax mexicanus 57.11 0.00e+00 970.00
IUUC-Bgr-012249 Blumeria graminis 53.23 0.00e+00 889.00
IUUC-Bta-013579 Bos taurus 62.66 0.00e+00 981.00
IUUC-Cel-018387 Caenorhabditis elegans 55.81 0.00e+00 980.00
IUUC-Cja-019145 Callithrix jacchus 63.16 0.00e+00 1115.00
IUUC-Cfa-020564 Canis familiaris 63.29 0.00e+00 1117.00
IUUC-Cpo-022201 Cavia porcellus 63.29 0.00e+00 1116.00
IUUC-Cin-025681 Ciona intestinalis 61.25 0.00e+00 1009.00
IUUC-Csv-026012 Ciona savignyi 60.25 0.00e+00 979.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 49.08 0.00e+00 798.00
IUUC-Cne-026986 Cryptococcus neoformans 49.58 0.00e+00 865.00
IUUC-Dre-027846 Danio rerio 63.29 0.00e+00 1118.00
IUUC-Dor-030462 Dipodomys ordii 60.45 0.00e+00 869.00
IUUC-Dme-031791 Drosophila melanogaster 57.90 0.00e+00 1016.00
IUUC-Eca-034180 Equus caballus 61.60 0.00e+00 1073.00
IUUC-Eeu-035086 Erinaceus europaeus 51.35 4.00e-122 431.00
IUUC-Fca-036265 Felis catus 63.29 0.00e+00 1115.00
IUUC-Fal-037202 Ficedula albicollis 62.61 0.00e+00 1068.00
IUUC-Fox-037711 Fusarium oxysporum 53.44 0.00e+00 852.00
IUUC-Fso-038268 Fusarium solani 52.88 0.00e+00 858.00
IUUC-Gmo-039046 Gadus morhua 63.45 0.00e+00 1110.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.19 0.00e+00 881.00
IUUC-Gac-041733 Gasterosteus aculeatus 62.55 0.00e+00 1076.00
IUUC-Ggo-044984 Gorilla gorilla 63.16 0.00e+00 1115.00
IUUC-Hsa-046698 Homo sapiens 63.04 0.00e+00 1115.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 63.29 0.00e+00 1114.00
IUUC-Kpa-049265 Komagataella pastoris 51.63 0.00e+00 855.00
IUUC-Lch-050473 Latimeria chalumnae 63.54 0.00e+00 1118.00
IUUC-Loc-052675 Lepisosteus oculatus 63.70 0.00e+00 1117.00
IUUC-Lma-053218 Leptosphaeria maculans 52.70 0.00e+00 874.00
IUUC-Laf-053757 Loxodonta africana 63.26 0.00e+00 1112.00
IUUC-Mcc-054859 Macaca mulatta 63.16 0.00e+00 1115.00
IUUC-Meu-056174 Macropus eugenii 55.72 2.00e-107 382.00
IUUC-Mor-057264 Magnaporthe oryzae 52.82 0.00e+00 863.00
IUUC-Mpo-057538 Magnaporthe poae 52.95 0.00e+00 887.00
IUUC-Mvi-060240 Microbotryum violaceum 50.86 0.00e+00 885.00
IUUC-Mmr-061261 Microcebus murinus 63.29 0.00e+00 1116.00
IUUC-Mmu-063324 Mus musculus 63.16 0.00e+00 1116.00
IUUC-Mpu-065961 Mustela putorius furo 63.29 0.00e+00 1115.00
IUUC-Mlu-067059 Myotis lucifugus 62.42 0.00e+00 1102.00
IUUC-Ncr-068659 Neurospora crassa 52.27 0.00e+00 894.00
IUUC-Nle-069034 Nomascus leucogenys 63.16 0.00e+00 1114.00
IUUC-Opr-070334 Ochotona princeps 63.77 0.00e+00 1018.00
IUUC-Ont-071563 Oreochromis niloticus 63.04 0.00e+00 1113.00
IUUC-Oan-073416 Ornithorhynchus anatinus 63.04 0.00e+00 1063.00
IUUC-Ocu-074522 Oryctolagus cuniculus 63.29 0.00e+00 1112.00
IUUC-Ola-087245 Oryzias latipes 62.92 0.00e+00 1115.00
IUUC-Oga-088163 Otolemur garnettii 60.62 0.00e+00 1056.00
IUUC-Oar-089842 Ovis aries 63.16 0.00e+00 1116.00
IUUC-Ptr-090501 Pan troglodytes 63.16 0.00e+00 1115.00
IUUC-Pan-092011 Papio anubis 63.16 0.00e+00 1115.00
IUUC-Pma-094695 Petromyzon marinus 59.02 0.00e+00 988.00
IUUC-Pno-094785 Phaeosphaeria nodorum 58.76 1.00e-103 370.00
IUUC-Ppa-095911 Physcomitrella patens 82.20 0.00e+00 1377.00
IUUC-Pfo-096587 Poecilia formosa 62.92 0.00e+00 1116.00
IUUC-Pab-097926 Pongo abelii 61.55 0.00e+00 1042.00
IUUC-Pca-100965 Procavia capensis 62.30 0.00e+00 1081.00
IUUC-Pva-102451 Pteropus vampyrus 59.25 0.00e+00 861.00
IUUC-Pte-104274 Pyrenophora teres 53.86 0.00e+00 906.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 53.19 0.00e+00 853.00
IUUC-Rno-105979 Rattus norvegicus 54.07 0.00e+00 825.00
IUUC-Sce-106269 Saccharomyces cerevisiae 46.85 0.00e+00 753.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 45.76 0.00e+00 769.00
IUUC-Smo-108695 Selaginella moellendorffii 80.99 0.00e+00 1389.00
IUUC-Sar-113472 Sorex araneus 57.84 0.00e+00 775.00
IUUC-Sre-115040 Sporisorium reilianum 51.83 0.00e+00 889.00
IUUC-Ssc-115593 Sus scrofa 63.16 0.00e+00 1115.00
IUUC-Tgu-117239 Taeniopygia guttata 63.46 0.00e+00 1123.00
IUUC-Tru-118025 Takifugu rubripes 62.64 0.00e+00 1109.00
IUUC-Tsy-118824 Tarsius syrichta 59.30 0.00e+00 805.00
IUUC-Tni-120142 Tetraodon nigroviridis 62.89 0.00e+00 1110.00
IUUC-Tre-122072 Trichoderma reesei 52.70 0.00e+00 883.00
IUUC-Tvi-122546 Trichoderma virens 52.28 0.00e+00 870.00
IUUC-Tme-127041 Tuber melanosporum 53.62 0.00e+00 913.00
IUUC-Tbe-127770 Tupaia belangeri 61.60 0.00e+00 904.00
IUUC-Ttr-129294 Tursiops truncatus 63.04 0.00e+00 1113.00
IUUC-Uma-129351 Ustilago maydis 50.61 0.00e+00 880.00
IUUC-Vpa-130037 Vicugna pacos 52.35 3.00e-128 452.00
IUUC-Xma-133347 Xiphophorus maculatus 63.16 0.00e+00 1118.00
Created Date 25-Jun-2017

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