iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099803

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_656659; POPTR_0008s106302g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s10630	POPTR_0008s10630.1	POPTR_0008s10630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-30	104.3	324	360
UBD/Beta-Prp	7.80e-45	154.4	239	496

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWDlrt 32
           gH++ vt++af   ++    l+s+sdDgt+++WD r+
   Q: 324  GHSAAVTSIAFsprPGsaYQLLSSSDDGTCRIWDARS 360
           8***********99545688**************765 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           +gh+   ++c  f +++++++tgs+d+ +k+w+++t  +l+s  ghe+ +t++  +++  + +++s+D +i+vw l +g ++++l+gh++ 
   Q: 239  RGHRN-AVYCAIFDRSGRYVVTGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVNSNNTLVASSSNDCIIRVWRLPDGMPISVLRGHSAA 328
           45555.5566999**********************************************9******************************* PP
   S: 97   vlslsfsp...sgdklvsGshdrtirvwdletgqclee...................tlsghdgvvncvvvhpdgnllvsGslDrtvrlWd 165
           v+s++fsp   s + l+s s+d t r+wd ++                            ++++ + c +++  gn++v+Gs D   r+W+
   Q: 329  VTSIAFSPrpgSAYQLLSSSDDGTCRIWDARSSNLGARiyvprppdpvagknsgpssSSGPQSHQIFCCAFNAHGNVFVTGSSDHLARVWN 419
           ********99888*******************99998899***************997778888999999***9***************** PP
   S: 166  l.........ktgkllrtltgghtdsvysls.........fdsng....................kelvsgsldgtvklwd 208
                     + +  ++ l g h+++v+ ++         f   +                     ++v++s+dg+ ++w 
   Q: 420  AlksntddsdQPNHEIDALPG-HENDVNYVQfsgcvvpsrF---SmadsskeenipkfknswysqDSIVTCSRDGSAIIWI 496
           ****99977666666666677.*********6666555550...0555566777788888888889**************5 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MALRKYIPSS DAPSGSMKPL IFSSKGRENA QLAEPETSHR RVKDVDVDLS EVYFLIMHFL 60
SAGPCQRTYV QFWNELLEHQ LLPRRYHAWY SRRERLSGDE NDNGLSFPLS YKSLEERYPH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCTTC GGAAGTACAT TCCTTCAAGT GATGCACCTT CTGGTAGTAT GAAGCCTTTG 60
ATCTTTTCAA GTAAGGGGCG TGAGAATGCC CAACTTGCAG AGCCAGAGAC AAGTCACAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

pop:POPTR_0008s106302

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Dre-028029	Danio rerio	33.63	4.00e-78	286.00
IUUC-Eeu-034871	Erinaceus europaeus	31.00	2.00e-40	161.00
IUUC-Loc-052672	Lepisosteus oculatus	33.33	3.00e-76	280.00
IUUC-Meu-056321	Macropus eugenii	31.90	5.00e-55	209.00
IUUC-Ont-072221	Oreochromis niloticus	34.09	1.00e-76	281.00
IUUC-Ola-086648	Oryzias latipes	34.44	8.00e-77	282.00
IUUC-Pfo-096191	Poecilia formosa	33.53	2.00e-75	277.00
IUUC-Sar-113004	Sorex araneus	30.43	8.00e-65	242.00
IUUC-Sbi-114195	Sorghum bicolor	68.73	0.00e+00	802.00
IUUC-Ssc-115461	Sus scrofa	32.26	4.00e-69	256.00
IUUC-Tru-117625	Takifugu rubripes	33.89	1.00e-75	278.00
IUUC-Tni-120716	Tetraodon nigroviridis	33.83	1.00e-76	281.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence