iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131362

UUCD1 version

UUC-ViV-00583

Ensembl Protein ID

VIT_05s0077g01160.t01

UniProt Accession

F6H734; F6H734_VITVI

Genbank Protein ID

CCB47981.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595246

Gene Name

VIT_05s0077g01160

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_05s0077g01160	VIT_05s0077g01160.t01	VIT_05s0077g01160.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-27	94.4	325	358
UBD/Beta-Prp	5.00e-44	151.2	236	497

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sd.tllvsGsdDgtikvWD 29
           gHt+ vt++af    s+   l+s+sdDgt+++WD
   Q: 325  GHTGAVTAIAFsprpSSvYQLLSSSDDGTCRIWD 358
           8************9755788************** PP

UBD/Beta-Prp

   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvht 89
           ik+l+gh+ +v +   f + +++++tgs+d+ +k+w+++t  +l+s  ghe+ +t++  s++  + +++s+D +i+vw l +g ++++
   Q: 236  IKKLRGHRNAVYC-AIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASSSNDCIIRVWRLPDGLPISV 322
           5677888887666.8999********************************************99************************ PP
   S: 90   lkghedsvlslsfsp..sg.dklvsGshdrtirvwdletgqclee...................tlsghdgvvncvvvhpdgnllvsG 155
           l+gh+  v++++fsp  s+ + l+s s+d t r+wd +  q +                      + ++++ + c +++ +g ++v+G
   Q: 323  LRGHTGAVTAIAFSPrpSSvYQLLSSSDDGTCRIWDARYSQFSPRiyvprppdsiagknnvpssSNGPQSHQIFCCAFNANGTVFVTG 410
           ***************99555**********************999****************99988899999**************** PP
   S: 156  slDrtvrlWdl......ktgkllrtl...tgghtdsvyslsfdsng..........................kelvsgsldgtvklwd 208
           s D+  r+W+       ++++  +++   +g h+++v+ ++f+                               +v++s+dg+ ++w 
   Q: 411  SSDTLARVWNAcksnpdESDQPNHEMdilSG-HENDVNYVQFSGCAvssrfsvaesskeenvpkfknswfthDNIVTCSRDGSAIIWI 497
           *****************66666666666366.*********666556666666667778888888899999999************95 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MALQKYIPSG DAPSVSMKPL SFSSKVQEKV QLADPEGSPT MDADVDIDLR EVYFLIMHFL 60
SAGPCHRTYG QFWNELLEHQ LLPRRYHAWY SRSGLRSGDE NDDGSSFPLS YNKLVERYPH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCTTC AGAAATACAT TCCTTCTGGT GATGCACCTT CTGTTAGTAT GAAACCTTTG 60
AGTTTTTCCA GTAAGGTTCA GGAGAAAGTT CAACTTGCTG ATCCGGAGGG AAGTCCTACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50014--BROMODOMAIN_2
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00439--Bromodomain
PF00400--WD40

SMART

SM00297--BROMO
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001113	Aegilops tauschii	54.72	0.00e+00	992.00
IUUC-Atr-002600	Amborella trichopoda	58.83	0.00e+00	1696.00
IUUC-Aca-004474	Anolis carolinensis	31.66	2.00e-82	301.00
IUUC-Aly-006406	Arabidopsis lyrata	58.60	0.00e+00	1665.00
IUUC-Ath-006801	Arabidopsis thaliana	58.55	0.00e+00	1682.00
IUUC-Ame-010718	Astyanax mexicanus	31.95	6.00e-84	306.00
IUUC-Bta-013217	Bos taurus	30.88	1.00e-78	288.00
IUUC-Bdi-014797	Brachypodium distachyon	52.73	0.00e+00	914.00
IUUC-Bol-015737	Brassica oleracea	57.75	0.00e+00	1690.00
IUUC-Bra-017961	Brassica rapa	57.44	0.00e+00	1699.00
IUUC-Cfa-021037	Canis familiaris	31.17	1.00e-79	292.00
IUUC-Cpo-021934	Cavia porcellus	30.88	5.00e-79	290.00
IUUC-Cho-024690	Choloepus hoffmanni	27.16	8.00e-36	146.00
IUUC-Cin-025702	Ciona intestinalis	36.22	1.00e-30	125.00
IUUC-Csv-025813	Ciona savignyi	25.86	2.00e-57	216.00
IUUC-Dre-028029	Danio rerio	31.48	2.00e-81	297.00
IUUC-Dno-030048	Dasypus novemcinctus	31.97	5.00e-77	283.00
IUUC-Dor-031052	Dipodomys ordii	28.26	5.00e-40	159.00
IUUC-Ete-032717	Echinops telfairi	34.24	4.00e-40	160.00
IUUC-Eca-034274	Equus caballus	31.92	9.00e-73	268.00
IUUC-Gmo-039116	Gadus morhua	28.09	1.00e-22	102.00
IUUC-Gac-042435	Gasterosteus aculeatus	29.62	5.00e-64	239.00
IUUC-Gma-044324	Glycine max	64.69	0.00e+00	2031.00
IUUC-Ggo-045500	Gorilla gorilla	31.02	3.00e-79	290.00
IUUC-Hsa-046350	Homo sapiens	31.02	3.00e-79	290.00
IUUC-Hvu-047706	Hordeum vulgare	80.79	1.00e-151	528.00
IUUC-Itr-047962	Ictidomys tridecemlineatus	27.54	4.00e-29	122.00
IUUC-Lch-049662	Latimeria chalumnae	31.56	4.00e-85	310.00
IUUC-Lpe-051619	Leersia perrieri	64.51	0.00e+00	1157.00
IUUC-Laf-053848	Loxodonta africana	30.78	2.00e-79	290.00
IUUC-Mcc-054638	Macaca mulatta	30.88	7.00e-79	289.00
IUUC-Mtr-058094	Medicago truncatula	62.81	0.00e+00	1919.00
IUUC-Mga-060165	Meleagris gallopavo	30.43	9.00e-77	282.00
IUUC-Mmr-061227	Microcebus murinus	30.88	1.00e-79	291.00
IUUC-Mdo-061903	Monodelphis domestica	32.20	3.00e-82	300.00
IUUC-Mac-065343	Musa acuminata	66.27	0.00e+00	1313.00
IUUC-Mpu-066628	Mustela putorius furo	30.33	6.00e-77	282.00
IUUC-Mlu-068082	Myotis lucifugus	30.01	8.00e-76	278.00
IUUC-Nle-069402	Nomascus leucogenys	31.02	2.00e-78	287.00
IUUC-Opr-070971	Ochotona princeps	26.58	2.00e-40	160.00
IUUC-Oan-072954	Ornithorhynchus anatinus	31.37	1.00e-82	301.00
IUUC-Ocu-074456	Oryctolagus cuniculus	30.61	6.00e-74	273.00
IUUC-Oba-075709	Oryza barthii	53.65	0.00e+00	1539.00
IUUC-Obr-076619	Oryza brachyantha	63.52	0.00e+00	1212.00
IUUC-Ogl-077493	Oryza glaberrima	46.85	0.00e+00	1278.00
IUUC-Ogu-078641	Oryza glumaepatula	50.75	0.00e+00	853.00
IUUC-Oin-079669	Oryza indica	58.44	0.00e+00	810.00
IUUC-Olo-080755	Oryza longistaminata	46.48	0.00e+00	1235.00
IUUC-Oni-082991	Oryza nivara	45.51	0.00e+00	1210.00
IUUC-Opu-083233	Oryza punctata	63.60	0.00e+00	1214.00
IUUC-Oru-085195	Oryza rufipogon	53.60	0.00e+00	1529.00
IUUC-Olu-087745	Ostreococcus lucimarinus	33.99	1.00e-77	284.00
IUUC-Oga-089053	Otolemur garnettii	29.48	6.00e-75	276.00
IUUC-Ptr-091213	Pan troglodytes	31.02	4.00e-79	290.00
IUUC-Pan-092444	Papio anubis	31.02	2.00e-79	290.00
IUUC-Psi-093271	Pelodiscus sinensis	31.41	5.00e-69	256.00
IUUC-Pma-094427	Petromyzon marinus	33.06	4.00e-38	150.00
IUUC-Pop-099185	Populus trichocarpa	67.43	0.00e+00	2151.00
IUUC-Pca-101128	Procavia capensis	30.99	1.00e-69	258.00
IUUC-Ppe-101849	Prunus persica	66.87	0.00e+00	2164.00
IUUC-Rno-105687	Rattus norvegicus	30.63	2.00e-78	287.00
IUUC-Sha-106680	Sarcophilus harrisii	31.00	1.00e-76	281.00
IUUC-Sit-110017	Setaria italica	51.27	0.00e+00	920.00
IUUC-Sar-113004	Sorex araneus	28.80	1.00e-66	248.00
IUUC-Sbi-114195	Sorghum bicolor	74.07	0.00e+00	903.00
IUUC-Tgu-116513	Taeniopygia guttata	30.47	8.00e-79	289.00
IUUC-Tca-121098	Theobroma cacao	66.57	0.00e+00	2131.00
IUUC-Tae-125478	Triticum aestivum	61.83	0.00e+00	1175.00
IUUC-Tur-126809	Triticum urartu	60.16	0.00e+00	1160.00
IUUC-Tbe-127479	Tupaia belangeri	44.14	6.00e-31	129.00
IUUC-Ttr-128561	Tursiops truncatus	30.59	1.00e-74	275.00
IUUC-Vpa-130160	Vicugna pacos	31.83	3.00e-75	277.00
IUUC-Xtr-132717	Xenopus tropicalis	31.86	4.00e-83	303.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence