iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ame-011552

Ensembl Protein ID

ENSAMXP00000025438.1

UniProt Accession

W5LRD3; W5LRD3_ASTMX

Genbank Protein ID

ENSAMXP00000025438

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

APWO01085837

Gene Name

KDM5B (1 of many)

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSAMXG00000024732.1	ENSAMXT00000025457.1	ENSAMXP00000025438.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	5.20e-13	49.2	290	336

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +ClvCg gg+++  l+ C+ C++ +H  Cl ++   ++p+ + w CpkC 
   Q: 290  ICLVCGGGGDED-RLLLCDGCDDSYHTFCLIPP-LHDVPKGD-WRCPKCL 336
           7*********88.5*******************.*******7.******5 PP

Organism

Astyanax mexicanus

Protein Sequence
(Fasta)

MTQPRPSEFI PPPECPVFEP SWEEFSDPFG FINKIRSIAE NTGICKIRPP PGWQPPFACD 60
VDRLHFTPRI QRLNELEAQT RVRLNFLDQI AKFWELQGCT LKIPHVERKS LDLYQLYKVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTAGCAGTT TCTACATGTC CTCATCTGGA TGCAGTTCCC CAGAATGACC CAGCCTCGAC 60
CCAGCGAGTT TATTCCGCCG CCGGAGTGCC CTGTGTTTGA GCCCAGTTGG GAAGAATTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002595	Amborella trichopoda	30.51	3.00e-124	440.00
IUUC-Bci-013992	Botrytis cinerea	34.81	5.00e-109	390.00
IUUC-Dre-028118	Danio rerio	71.41	0.00e+00	1989.00
IUUC-Eeu-035012	Erinaceus europaeus	58.22	0.00e+00	1166.00
IUUC-Oba-075388	Oryza barthii	27.02	7.00e-79	290.00
IUUC-Ogu-079040	Oryza glumaepatula	26.98	9.00e-80	292.00
IUUC-Ome-081764	Oryza meridionalis	28.57	3.00e-97	350.00
IUUC-Oni-083012	Oryza nivara	26.89	8.00e-79	289.00
IUUC-Oru-084630	Oryza rufipogon	27.08	3.00e-78	287.00
IUUC-Ola-086542	Oryzias latipes	69.57	0.00e+00	1577.00
IUUC-Ppa-095839	Physcomitrella patens	52.24	3.00e-16	82.00
IUUC-Ppe-101504	Prunus persica	32.07	5.00e-98	353.00
IUUC-Pgr-103434	Puccinia graminis	35.40	1.00e-28	120.00
IUUC-Sre-115161	Sporisorium reilianum	28.53	8.00e-122	432.00
IUUC-Tca-121478	Theobroma cacao	31.56	5.00e-104	373.00
IUUC-Tae-125894	Triticum aestivum	34.53	1.00e-106	382.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence