iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppe-102078

Ensembl Protein ID

EMJ05818

UniProt Accession

M5W983; M5W983_PRUPE

Genbank Protein ID

EMJ05818.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

KB639097

Gene Name

PRUPE_ppa002352mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PRUPE_ppa002352mg	EMJ05818	EMJ05818

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-14	54.1	348	386

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+d vt+++   s+  ++sGs Dgt+++W++ tg++lk
   Q: 348  GHEDAVTSISVeaSGQWIASGSLDGTVRIWEVETGRCLK 386
           8*********9987799********************98 PP

Organism

Prunus persica

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MSDSEGYDSD DYPSIRGSDS EDEESGSSGN EDVLNTSNND HGNDDESDSS ELHEGVEESD 60
SSEDEVVPRN TVGDVPLEWY RDEKHIGYDI TGKKIKKKEK EDKLQSFLAS ADDSKNWRKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTACCTTGG GGTTTAGGGT TTTTCAGTTT TCATAGTCTC TGATTGAGGA GAAGGGGAAG 60
AGAGAGAAGA GAGGAGTTTG CAGCCGCTGT ACCAGAAAAC CAGAGGTGTG CCTTCAGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pper:PRUPE_ppa002352mg

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	59.33	0.00e+00	677.00
IUUC-Aml-001507	Ailuropoda melanoleuca	42.14	5.00e-136	477.00
IUUC-Atr-003171	Amborella trichopoda	64.24	3.00e-141	494.00
IUUC-Apl-003545	Anas platyrhynchos	39.34	1.00e-112	399.00
IUUC-Aly-005649	Arabidopsis lyrata	70.24	0.00e+00	882.00
IUUC-Ath-007625	Arabidopsis thaliana	67.87	0.00e+00	864.00
IUUC-Ago-007958	Ashbya gossypii	39.24	6.00e-136	477.00
IUUC-Acl-008344	Aspergillus clavatus	42.44	3.00e-121	428.00
IUUC-Afl-008616	Aspergillus flavus	40.50	2.00e-125	442.00
IUUC-Afu-009083	Aspergillus fumigatus	41.60	9.00e-120	423.00
IUUC-Ani-009365	Aspergillus nidulans	40.58	8.00e-125	440.00
IUUC-Ang-009796	Aspergillus niger	39.69	2.00e-122	432.00
IUUC-Aor-010015	Aspergillus oryzae	40.50	2.00e-125	442.00
IUUC-Ate-010537	Aspergillus terreus	41.16	9.00e-127	446.00
IUUC-Ame-011767	Astyanax mexicanus	44.74	4.00e-64	236.00
IUUC-Bgr-012286	Blumeria graminis	42.77	6.00e-136	477.00
IUUC-Bta-013569	Bos taurus	44.89	1.00e-149	522.00
IUUC-Bci-013820	Botrytis cinerea	41.09	1.00e-124	439.00
IUUC-Bdi-014477	Brachypodium distachyon	64.94	0.00e+00	814.00
IUUC-Bol-016099	Brassica oleracea	70.39	0.00e+00	882.00
IUUC-Bra-017174	Brassica rapa	70.60	0.00e+00	890.00
IUUC-Cel-018201	Caenorhabditis elegans	39.90	3.00e-120	425.00
IUUC-Cja-019009	Callithrix jacchus	40.19	7.00e-128	450.00
IUUC-Cfa-020173	Canis familiaris	40.28	7.00e-133	466.00
IUUC-Cpo-021796	Cavia porcellus	44.19	6.00e-146	510.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	47.10	2.00e-156	545.00
IUUC-Csa-023440	Chlorocebus sabaeus	43.32	3.00e-151	528.00
IUUC-Cin-025782	Ciona intestinalis	43.78	4.00e-144	504.00
IUUC-Csv-026352	Ciona savignyi	42.32	9.00e-138	483.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	38.20	5.00e-103	367.00
IUUC-Cne-027004	Cryptococcus neoformans	42.09	6.00e-144	503.00
IUUC-Cme-027242	Cyanidioschyzon merolae	34.41	2.00e-103	369.00
IUUC-Dre-028658	Danio rerio	44.54	2.00e-152	532.00
IUUC-Dno-028883	Dasypus novemcinctus	45.09	6.00e-153	533.00
IUUC-Dor-031031	Dipodomys ordii	43.99	2.00e-151	528.00
IUUC-Dse-031443	Dothistroma septosporum	39.72	1.00e-126	446.00
IUUC-Dme-031786	Drosophila melanogaster	43.04	2.00e-150	525.00
IUUC-Eca-033677	Equus caballus	42.69	3.00e-149	521.00
IUUC-Eeu-035310	Erinaceus europaeus	41.75	8.00e-110	389.00
IUUC-Fca-035888	Felis catus	43.25	3.00e-147	514.00
IUUC-Fal-037438	Ficedula albicollis	43.01	5.00e-122	430.00
IUUC-Fox-037973	Fusarium oxysporum	42.28	4.00e-139	487.00
IUUC-Fso-038187	Fusarium solani	41.58	4.00e-137	481.00
IUUC-Gmo-039114	Gadus morhua	41.71	3.00e-131	461.00
IUUC-Ggr-039746	Gaeumannomyces graminis	39.22	1.00e-136	479.00
IUUC-Gga-040631	Gallus gallus	46.45	7.00e-92	329.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.87	9.00e-143	499.00
IUUC-Gma-044215	Glycine max	73.61	0.00e+00	952.00
IUUC-Ggo-045587	Gorilla gorilla	43.32	3.00e-150	524.00
IUUC-Hsa-046319	Homo sapiens	43.32	3.00e-150	524.00
IUUC-Hvu-047526	Hordeum vulgare	63.81	0.00e+00	803.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.73	3.00e-150	524.00
IUUC-Kpa-049221	Komagataella pastoris	37.82	4.00e-124	437.00
IUUC-Lch-049640	Latimeria chalumnae	45.64	6.00e-159	553.00
IUUC-Lpe-051135	Leersia perrieri	61.43	0.00e+00	735.00
IUUC-Loc-051930	Lepisosteus oculatus	45.06	2.00e-156	545.00
IUUC-Lma-053290	Leptosphaeria maculans	42.75	3.00e-128	451.00
IUUC-Laf-053903	Loxodonta africana	42.38	7.00e-131	460.00
IUUC-Mcc-055471	Macaca mulatta	41.74	2.00e-151	529.00
IUUC-Meu-056190	Macropus eugenii	44.39	3.00e-147	514.00
IUUC-Mor-057135	Magnaporthe oryzae	40.80	6.00e-128	450.00
IUUC-Mpo-057475	Magnaporthe poae	40.50	3.00e-127	448.00
IUUC-Mtr-058689	Medicago truncatula	68.58	0.00e+00	876.00
IUUC-Mla-059149	Melampsora laricipopulina	41.18	3.00e-131	461.00
IUUC-Mga-059645	Meleagris gallopavo	40.00	9.00e-53	199.00
IUUC-Mvi-060485	Microbotryum violaceum	39.97	2.00e-120	426.00
IUUC-Mmr-061674	Microcebus murinus	43.69	5.00e-143	500.00
IUUC-Mdo-062973	Monodelphis domestica	43.43	9.00e-152	530.00
IUUC-Mmu-064180	Mus musculus	41.94	4.00e-151	527.00
IUUC-Mac-064535	Musa acuminata	64.36	7.00e-172	597.00
IUUC-Mpu-066406	Mustela putorius furo	43.96	2.00e-153	535.00
IUUC-Mlu-067795	Myotis lucifugus	44.41	4.00e-142	497.00
IUUC-Nfi-068516	Neosartorya fischeri	40.90	4.00e-116	411.00
IUUC-Ncr-068767	Neurospora crassa	41.14	8.00e-122	430.00
IUUC-Opr-071084	Ochotona princeps	41.73	1.00e-60	226.00
IUUC-Ont-071614	Oreochromis niloticus	44.61	6.00e-152	530.00
IUUC-Oba-075980	Oryza barthii	61.91	0.00e+00	739.00
IUUC-Obr-076799	Oryza brachyantha	64.61	0.00e+00	808.00
IUUC-Ogl-077134	Oryza glaberrima	64.94	0.00e+00	793.00
IUUC-Ogu-078655	Oryza glumaepatula	62.66	0.00e+00	769.00
IUUC-Oin-079654	Oryza indica	64.94	0.00e+00	791.00
IUUC-Olo-080706	Oryza longistaminata	61.59	0.00e+00	736.00
IUUC-Ome-081716	Oryza meridionalis	50.57	3.00e-160	558.00
IUUC-Oni-082508	Oryza nivara	62.18	0.00e+00	748.00
IUUC-Opu-083707	Oryza punctata	61.59	0.00e+00	736.00
IUUC-Oru-084453	Oryza rufipogon	61.59	0.00e+00	736.00
IUUC-Osa-085811	Oryza sativa	64.77	0.00e+00	792.00
IUUC-Ola-087361	Oryzias latipes	46.83	6.00e-156	543.00
IUUC-Oga-088015	Otolemur garnettii	43.92	8.00e-150	523.00
IUUC-Ptr-090631	Pan troglodytes	38.85	1.00e-50	192.00
IUUC-Pan-092306	Papio anubis	41.83	2.00e-150	525.00
IUUC-Pma-094622	Petromyzon marinus	42.56	1.00e-146	512.00
IUUC-Pno-094794	Phaeosphaeria nodorum	39.84	4.00e-118	418.00
IUUC-Ppa-095528	Physcomitrella patens	53.73	3.00e-138	484.00
IUUC-Pfo-096682	Poecilia formosa	44.76	2.00e-153	535.00
IUUC-Pab-097939	Pongo abelii	42.33	3.00e-136	477.00
IUUC-Pop-099043	Populus trichocarpa	77.25	0.00e+00	884.00
IUUC-Pca-100333	Procavia capensis	43.92	5.00e-150	523.00
IUUC-Pgr-103525	Puccinia graminis	39.48	1.00e-118	419.00
IUUC-Ptt-103929	Puccinia triticina	39.18	3.00e-113	402.00
IUUC-Pte-104029	Pyrenophora teres	42.50	6.00e-137	480.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	42.35	2.00e-137	482.00
IUUC-Rno-105248	Rattus norvegicus	44.73	4.00e-151	527.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.55	2.00e-133	469.00
IUUC-Sha-106519	Sarcophilus harrisii	43.60	8.00e-153	533.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	40.76	1.00e-127	449.00
IUUC-Spo-108071	Schizosaccharomyces pombe	39.60	1.00e-125	442.00
IUUC-Smo-109604	Selaginella moellendorffii	56.90	0.00e+00	692.00
IUUC-Sit-110551	Setaria italica	65.15	0.00e+00	805.00
IUUC-Sly-110970	Solanum lycopersicum	70.93	6.00e-143	499.00
IUUC-Stu-112593	Solanum tuberosum	72.11	0.00e+00	926.00
IUUC-Sar-113123	Sorex araneus	42.49	7.00e-67	246.00
IUUC-Sbi-113945	Sorghum bicolor	64.78	0.00e+00	825.00
IUUC-Sre-115188	Sporisorium reilianum	38.68	6.00e-123	434.00
IUUC-Ssc-115352	Sus scrofa	43.39	6.00e-148	516.00
IUUC-Tru-117685	Takifugu rubripes	45.79	8.00e-155	540.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.43	1.00e-149	522.00
IUUC-Tca-121664	Theobroma cacao	75.65	0.00e+00	982.00
IUUC-Tre-122229	Trichoderma reesei	40.52	3.00e-120	425.00
IUUC-Tvi-122576	Trichoderma virens	40.43	6.00e-121	427.00
IUUC-Tae-124110	Triticum aestivum	65.05	0.00e+00	780.00
IUUC-Tur-126781	Triticum urartu	59.67	0.00e+00	665.00
IUUC-Tme-127080	Tuber melanosporum	45.83	6.00e-151	526.00
IUUC-Ttr-128514	Tursiops truncatus	42.56	2.00e-93	336.00
IUUC-Uma-129556	Ustilago maydis	38.64	4.00e-121	428.00
IUUC-Vda-129715	Verticillium dahliae	42.44	4.00e-130	457.00
IUUC-Vvi-131211	Vitis vinifera	74.34	0.00e+00	935.00
IUUC-Xma-133883	Xiphophorus maculatus	45.06	1.00e-148	519.00
IUUC-Yli-134438	Yarrowia lipolytica	38.81	1.00e-121	429.00
IUUC-Zma-135341	Zea mays	58.67	0.00e+00	771.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence