iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105135

Ensembl Protein ID

ENSRNOP00000042031.3

UniProt Accession

Q5BJN7; D4A7R8; Q5BJN7_RAT

Genbank Protein ID

AAH91402.1; EDM12554.1

Protein Name

40S ribosomal protein S30

Genbank Nucleotide ID

AABR07064586; CH473953

Gene Name

LOC100360647; Fau; LOC687780; rCG_47344

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000046393.1	ENSRNOT00000048726.3	ENSRNOP00000042031.3

Annotation

mRNA Expression
GEO
DNA & RNA Element
RAID2
Protein-protein Interaction
iRefIndex
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	2.10e-12	47.1	2	71

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 2    qvtvksldgseltlkvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekk 73
           q++v+  +   +tl+v  ++tVa++K ++ +++gi pe+q  +++G +Led  tL+++g+   +t+ +  ++
   Q: 2    QLFVRAQEL--HTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGRM 71
           666766665..9999***************************************************998776 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MQLFVRAQEL HTLEVTGQET VAQIKAHVAS LEGIAPEDQV VLLAGSPLED EATLGQCGVE 60
ALTTLEVAGR MLGGKVHGSL ARAGKVRGQT PKVAKQEKKK KKTGRAKRRM QYNRRFVNVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCAGCTCT TTGTCCGCGC CCAGGAACTA CACACCCTCG AGGTGACCGG CCAGGAGACG 60
GTCGCCCAGA TCAAAGCTCA TGTGGCCTCA CTGGAAGGCA TTGCCCCCGA AGATCAAGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein

Interpro

IPR006846--Ribosomal_S30
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF04758--Ribosomal_S30
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

rno:100360647; rno:29752; rno:687780

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001845	Ailuropoda melanoleuca	96.24	5.00e-58	216.00
IUUC-Aca-004403	Anolis carolinensis	82.71	3.00e-48	183.00
IUUC-Ame-010793	Astyanax mexicanus	84.96	1.00e-51	194.00
IUUC-Bgr-012187	Blumeria graminis	68.85	2.00e-09	53.50
IUUC-Cja-019692	Callithrix jacchus	98.50	1.00e-60	224.00
IUUC-Cfa-020250	Canis familiaris	99.25	5.00e-61	225.00
IUUC-Cpo-022140	Cavia porcellus	98.50	2.00e-60	224.00
IUUC-Csa-023775	Chlorocebus sabaeus	99.25	5.00e-61	225.00
IUUC-Cho-024882	Choloepus hoffmanni	94.52	1.00e-34	137.00
IUUC-Cin-025323	Ciona intestinalis	62.41	1.00e-40	158.00
IUUC-Dre-027970	Danio rerio	78.20	2.00e-49	187.00
IUUC-Dno-029624	Dasypus novemcinctus	97.74	1.00e-59	221.00
IUUC-Dor-031006	Dipodomys ordii	90.98	1.00e-55	208.00
IUUC-Dse-031318	Dothistroma septosporum	68.85	2.00e-09	53.50
IUUC-Eca-034412	Equus caballus	94.16	1.00e-58	218.00
IUUC-Eeu-034667	Erinaceus europaeus	88.72	1.00e-51	194.00
IUUC-Fca-036244	Felis catus	99.25	5.00e-61	225.00
IUUC-Fso-038410	Fusarium solani	67.21	7.00e-12	61.60
IUUC-Gmo-038746	Gadus morhua	81.20	2.00e-49	187.00
IUUC-Gga-041192	Gallus gallus	81.06	1.00e-46	177.00
IUUC-Gac-042368	Gasterosteus aculeatus	84.21	5.00e-55	206.00
IUUC-Ggo-044743	Gorilla gorilla	93.43	1.00e-63	234.00
IUUC-Hsa-046599	Homo sapiens	98.50	2.00e-60	224.00
IUUC-Itr-048944	Ictidomys tridecemlineatus	99.25	6.00e-61	225.00
IUUC-Lch-049631	Latimeria chalumnae	78.95	6.00e-47	179.00
IUUC-Loc-051820	Lepisosteus oculatus	81.95	4.00e-49	186.00
IUUC-Laf-053818	Loxodonta africana	96.24	2.00e-59	220.00
IUUC-Mcc-055140	Macaca mulatta	99.25	5.00e-61	225.00
IUUC-Meu-056295	Macropus eugenii	92.48	3.00e-54	203.00
IUUC-Mmr-060932	Microcebus murinus	96.99	3.00e-59	219.00
IUUC-Mdo-062865	Monodelphis domestica	94.74	1.00e-57	214.00
IUUC-Mmu-063948	Mus musculus	99.25	1.00e-60	224.00
IUUC-Mac-064868	Musa acuminata	72.88	1.00e-15	74.30
IUUC-Mpu-066735	Mustela putorius furo	99.25	5.00e-61	225.00
IUUC-Mlu-067486	Myotis lucifugus	96.24	3.00e-59	219.00
IUUC-Nle-069196	Nomascus leucogenys	99.25	6.00e-61	225.00
IUUC-Opr-070382	Ochotona princeps	95.49	7.00e-59	218.00
IUUC-Ont-072610	Oreochromis niloticus	81.20	2.00e-49	187.00
IUUC-Oan-073263	Ornithorhynchus anatinus	91.73	5.00e-55	205.00
IUUC-Ocu-074061	Oryctolagus cuniculus	95.49	1.00e-58	218.00
IUUC-Ola-087221	Oryzias latipes	81.95	1.00e-50	191.00
IUUC-Oga-088181	Otolemur garnettii	98.50	2.00e-60	223.00
IUUC-Oar-089617	Ovis aries	97.74	3.00e-60	223.00
IUUC-Ptr-090966	Pan troglodytes	98.50	2.00e-60	224.00
IUUC-Pan-091810	Papio anubis	99.25	5.00e-61	225.00
IUUC-Psi-093230	Pelodiscus sinensis	85.71	4.00e-53	199.00
IUUC-Pfo-096700	Poecilia formosa	81.95	1.00e-49	188.00
IUUC-Pab-098743	Pongo abelii	98.50	2.00e-60	223.00
IUUC-Pca-100193	Procavia capensis	87.67	8.00e-31	124.00
IUUC-Pva-102194	Pteropus vampyrus	99.25	5.00e-61	225.00
IUUC-Pte-104130	Pyrenophora teres	68.85	1.00e-09	53.90
IUUC-Sha-107302	Sarcophilus harrisii	94.74	1.00e-57	214.00
IUUC-Sar-113467	Sorex araneus	96.99	3.00e-60	223.00
IUUC-Ssc-116430	Sus scrofa	94.74	1.00e-58	217.00
IUUC-Tgu-116647	Taeniopygia guttata	76.69	2.00e-38	150.00
IUUC-Tru-117990	Takifugu rubripes	80.45	2.00e-48	184.00
IUUC-Tsy-119146	Tarsius syrichta	95.49	7.00e-58	215.00
IUUC-Tni-120055	Tetraodon nigroviridis	78.29	5.00e-44	169.00
IUUC-Tbe-128044	Tupaia belangeri	97.74	1.00e-60	224.00
IUUC-Ttr-128487	Tursiops truncatus	96.24	4.00e-59	219.00
IUUC-Vpa-130497	Vicugna pacos	82.71	3.00e-47	179.00
IUUC-Xtr-132086	Xenopus tropicalis	81.95	4.00e-49	186.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence