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Tag Content
UUCD2 ID IUUC-Ssc-116241
UUCD1 version UUC-SuS-00637
Ensembl Protein ID ENSSSCP00000017269.2
UniProt Accession F1SM42; F1SM42_PIG
Genbank Protein ID ENSSSCP00000017269
Protein Name Uncharacterized protein
Genbank Nucleotide ID FP102656
Gene Name ATG16L1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000016300.2 ENSSSCT00000017750.2 ENSSSCP00000017269.2
ENSSSCG00000016300.2 ENSSSCT00000028201.1 ENSSSCP00000027083.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.40e-27 94.1 406 445
UBD/Beta-Prp 1.20e-56 192.4 315 594
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
    gH+++v + +f ++ ++vsGs+D t+k+WDlr+ v++k+
   Q: 406 GHSGKVLSAKFllDNARIVSGSHDRTLKLWDLRSKVCIKT 445
    8***********64489********************985 PP
   


   UBD/Beta-Prp

   S: 3    ktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvht 89
    ++++++h++ +++v+fsp+++llatg++d+++k+w+v+ k+ slsg +a++t+++f++ g++l+ +s+D + ++w ++++ ht
   Q: 315 VCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCefKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT 403
    57899************************************9999******************************************** PP
   S: 90 lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
    l+gh+ +vls +f ++ ++vsGshdrt+++wdl+++ c++++++g + c + +++++++sG+ D+++r+Wd++ ++ g+
   Q: 404 LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSS----CNDIVCTEQCVMSGHFDKKIRFWDIRYNTRSLVSLGQ 488
    *****************************************9999988....888888889****************877654444566 PP
   S: 179 htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght....dnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
    ++ + f+++++el+s+s+d +k+ dl+ + + +t+ + + ++v fsp++ +++ gs++gs+++W + sg++ k+l++h
   Q: 489 LLGKQTASRFNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGfkcgSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKH 577
    99999999************************9999999998887888777779*********************************** PP
   S: 264 nssvisvavlsfgdnvl 280
    +ss i ++s+++ ++
   Q: 578 HSSPINAVAWSPSGAHV 594
    **999999999998776 PP
   

Organism Sus scrofa
Protein Sequence
(Fasta)
MSSSLRAAVF PRWKRHISEE LRRRDRLQRQ AFEEIILQYN KLLEKSDLHS VLAHKLQAEK 60
HDIPNRHEIS PGHDGAWNDS QLQEMAQLRI KHQEELTELH KKRGELAQLV IDLNNQMQQR 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ssc-116241|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCGTCGA GCCTCCGCGC CGCGGTCTTC CCTCGGTGGA AGCGCCACAT CTCGGAGGAG 60
CTGAGGCGCC GGGACCGGCT GCAGAGGCAG GCGTTCGAAG AGATCATCCT GCAGTGTGAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ssc-116241|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR013923--Autophagy-rel_prot_16
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08614--ATG16
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0005930--C:axoneme
GO:0000045--P:autophagosome assembly
GO:0039689--P:negative stranded viral RNA replication

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000090 Aegilops tauschii 28.52 2.00e-31 130.00
IUUC-Aml-002242 Ailuropoda melanoleuca 88.08 0.00e+00 987.00
IUUC-Apl-003384 Anas platyrhynchos 86.75 0.00e+00 1016.00
IUUC-Aca-004962 Anolis carolinensis 83.66 0.00e+00 987.00
IUUC-Aly-005435 Arabidopsis lyrata 28.34 1.00e-44 173.00
IUUC-Ath-006948 Arabidopsis thaliana 28.74 4.00e-47 182.00
IUUC-Ame-010915 Astyanax mexicanus 77.32 4.00e-142 496.00
IUUC-Bta-012388 Bos taurus 90.52 0.00e+00 1096.00
IUUC-Bdi-014231 Brachypodium distachyon 25.05 7.00e-35 141.00
IUUC-Bol-016174 Brassica oleracea 30.21 6.00e-44 171.00
IUUC-Bra-017165 Brassica rapa 28.21 2.00e-44 173.00
IUUC-Cel-018131 Caenorhabditis elegans 30.55 1.00e-56 213.00
IUUC-Cja-018898 Callithrix jacchus 86.38 0.00e+00 963.00
IUUC-Cfa-020484 Canis familiaris 93.46 0.00e+00 1103.00
IUUC-Cpo-022156 Cavia porcellus 90.42 0.00e+00 1059.00
IUUC-Csa-024019 Chlorocebus sabaeus 89.60 0.00e+00 1045.00
IUUC-Cho-024311 Choloepus hoffmanni 77.81 0.00e+00 904.00
IUUC-Cin-025260 Ciona intestinalis 37.73 6.00e-96 344.00
IUUC-Csv-025836 Ciona savignyi 43.62 4.00e-42 164.00
IUUC-Dre-027702 Danio rerio 72.31 0.00e+00 837.00
IUUC-Dno-029728 Dasypus novemcinctus 88.42 0.00e+00 1084.00
IUUC-Dor-030587 Dipodomys ordii 80.28 5.00e-112 398.00
IUUC-Dme-031595 Drosophila melanogaster 37.62 2.00e-98 352.00
IUUC-Ete-032969 Echinops telfairi 73.12 0.00e+00 719.00
IUUC-Eca-034214 Equus caballus 93.32 0.00e+00 923.00
IUUC-Eeu-034537 Erinaceus europaeus 85.74 0.00e+00 847.00
IUUC-Fca-036005 Felis catus 90.17 0.00e+00 1028.00
IUUC-Fal-037593 Ficedula albicollis 83.85 0.00e+00 951.00
IUUC-Gmo-039042 Gadus morhua 64.33 0.00e+00 644.00
IUUC-Gga-040986 Gallus gallus 84.15 0.00e+00 1021.00
IUUC-Gac-041351 Gasterosteus aculeatus 71.57 0.00e+00 856.00
IUUC-Gma-043265 Glycine max 27.38 1.00e-46 180.00
IUUC-Ggo-045427 Gorilla gorilla 89.40 0.00e+00 1066.00
IUUC-Hsa-046632 Homo sapiens 91.95 0.00e+00 1090.00
IUUC-Itr-048504 Ictidomys tridecemlineatus 88.13 0.00e+00 1028.00
IUUC-Lch-049439 Latimeria chalumnae 49.09 4.00e-131 461.00
IUUC-Lpe-051254 Leersia perrieri 29.51 2.00e-34 139.00
IUUC-Loc-052610 Lepisosteus oculatus 73.38 0.00e+00 852.00
IUUC-Laf-053936 Loxodonta africana 87.50 0.00e+00 1055.00
IUUC-Mcc-055504 Macaca mulatta 86.83 0.00e+00 1079.00
IUUC-Meu-056516 Macropus eugenii 79.93 0.00e+00 929.00
IUUC-Mtr-057981 Medicago truncatula 26.51 8.00e-39 154.00
IUUC-Mga-059777 Meleagris gallopavo 84.04 0.00e+00 1006.00
IUUC-Mmr-061298 Microcebus murinus 90.85 0.00e+00 1078.00
IUUC-Mdo-062969 Monodelphis domestica 84.50 0.00e+00 1009.00
IUUC-Mmu-064076 Mus musculus 88.40 0.00e+00 1043.00
IUUC-Mac-065161 Musa acuminata 26.77 4.00e-39 155.00
IUUC-Mpu-066196 Mustela putorius furo 91.18 0.00e+00 1078.00
IUUC-Mlu-067651 Myotis lucifugus 91.79 0.00e+00 1078.00
IUUC-Nle-069853 Nomascus leucogenys 90.77 0.00e+00 1070.00
IUUC-Opr-070350 Ochotona princeps 93.19 2.00e-118 419.00
IUUC-Ont-072489 Oreochromis niloticus 70.62 0.00e+00 837.00
IUUC-Oan-072703 Ornithorhynchus anatinus 79.67 0.00e+00 926.00
IUUC-Ocu-074205 Oryctolagus cuniculus 88.42 0.00e+00 1067.00
IUUC-Oba-075619 Oryza barthii 29.97 1.00e-34 140.00
IUUC-Obr-076632 Oryza brachyantha 29.59 3.00e-34 139.00
IUUC-Ogl-077671 Oryza glaberrima 29.97 1.00e-34 140.00
IUUC-Ogu-078052 Oryza glumaepatula 29.97 1.00e-34 140.00
IUUC-Oin-079611 Oryza indica 29.62 5.00e-33 135.00
IUUC-Olo-080408 Oryza longistaminata 29.97 3.00e-34 139.00
IUUC-Ome-081560 Oryza meridionalis 29.97 9.00e-35 141.00
IUUC-Oni-082145 Oryza nivara 29.97 1.00e-34 140.00
IUUC-Opu-083918 Oryza punctata 29.62 6.00e-34 138.00
IUUC-Oru-084858 Oryza rufipogon 29.62 9.00e-33 134.00
IUUC-Osa-086277 Oryza sativa 29.62 5.00e-33 135.00
IUUC-Ola-086816 Oryzias latipes 70.44 2.00e-101 361.00
IUUC-Olu-087622 Ostreococcus lucimarinus 32.29 1.00e-38 153.00
IUUC-Oga-088765 Otolemur garnettii 88.78 0.00e+00 996.00
IUUC-Oar-090196 Ovis aries 87.30 0.00e+00 976.00
IUUC-Ptr-091676 Pan troglodytes 91.95 0.00e+00 1090.00
IUUC-Pan-092068 Papio anubis 90.38 0.00e+00 1073.00
IUUC-Psi-093367 Pelodiscus sinensis 86.74 0.00e+00 1006.00
IUUC-Pfo-096067 Poecilia formosa 71.50 0.00e+00 820.00
IUUC-Pab-098111 Pongo abelii 89.56 0.00e+00 1067.00
IUUC-Pop-099116 Populus trichocarpa 26.26 7.00e-43 168.00
IUUC-Pca-100680 Procavia capensis 79.10 0.00e+00 895.00
IUUC-Pva-102871 Pteropus vampyrus 88.00 0.00e+00 998.00
IUUC-Rno-106088 Rattus norvegicus 88.24 0.00e+00 1044.00
IUUC-Sha-106984 Sarcophilus harrisii 87.46 0.00e+00 1015.00
IUUC-Smo-109404 Selaginella moellendorffii 27.65 7.00e-43 167.00
IUUC-Sit-110828 Setaria italica 26.92 9.00e-42 164.00
IUUC-Sly-111009 Solanum lycopersicum 26.12 3.00e-43 169.00
IUUC-Stu-112370 Solanum tuberosum 26.32 1.00e-44 174.00
IUUC-Sar-113659 Sorex araneus 63.18 2.00e-93 335.00
IUUC-Sbi-114819 Sorghum bicolor 25.34 2.00e-38 152.00
IUUC-Tgu-116576 Taeniopygia guttata 86.74 0.00e+00 1043.00
IUUC-Tru-118336 Takifugu rubripes 63.83 0.00e+00 695.00
IUUC-Tsy-119006 Tarsius syrichta 85.62 0.00e+00 1012.00
IUUC-Tni-120300 Tetraodon nigroviridis 73.16 0.00e+00 826.00
IUUC-Tca-121002 Theobroma cacao 28.43 6.00e-47 181.00
IUUC-Tae-124868 Triticum aestivum 29.21 2.00e-32 133.00
IUUC-Tur-126463 Triticum urartu 29.11 3.00e-31 129.00
IUUC-Tbe-127631 Tupaia belangeri 92.06 0.00e+00 867.00
IUUC-Ttr-129005 Tursiops truncatus 81.09 6.00e-148 517.00
IUUC-Vpa-130246 Vicugna pacos 82.35 0.00e+00 825.00
IUUC-Vvi-130878 Vitis vinifera 33.33 2.00e-38 153.00
IUUC-Xtr-132798 Xenopus tropicalis 74.25 0.00e+00 845.00
IUUC-Xma-133264 Xiphophorus maculatus 71.45 0.00e+00 826.00
Created Date 25-Jun-2017

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