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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Spo-108219
Ensembl Protein ID SPBC337.08c.1:pep
UniProt Accession P0CG72; O13697; O14257; P0C014; Q76PD0; Q9HDZ4; UBI4P_SCHPO
Genbank Protein ID CAA21278.1
Protein Name Polyubiquitin; Ubiquitin
Genbank Nucleotide ID CU329671
Gene Name ubi4; SPBC337.08c
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC337.08c SPBC337.08c.1 SPBC337.08c.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexMentha
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 3.30e-205 663.0 305 380
ULD/UDP/UBQ/UBQ_PIM 4.10e-142 460.5 305 377
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
    m+i+vktLtgk+i++e+e+sdti+++k ++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
    89*************************************************************************9 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
    m+++vktl+gk+++lev+++dt+ ++K ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++
   Q: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 377
    99********************************************************************986 PP
   

Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description



     Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKSKIQDKE GIPPDQQRLI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Spo-108219|ULD,NEDD8;ULD,UBQ_PIM|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGCTAATTAT CGCTAAGAAG CATGAGCGCA GCTTACTCCA AATTCCCAGT CACAAACCTG 60
ACCCACATCA AAAAAAAGTA TAAACATCAA AATTTACAAA GAGCACATAT ATCGTAGACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Spo-108219|ULD,NEDD8;ULD,UBQ_PIM|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0832--Ubl conjugation

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0031386--F:protein tag
GO:0051321--P:meiotic cell cycle
GO:0016567--P:protein ubiquitination

KEGG spo:SPBC337.08c
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000772 Aegilops tauschii 46.37 2.00e-48 185.00
IUUC-Aml-001483 Ailuropoda melanoleuca 95.63 5.00e-125 437.00
IUUC-Apl-003614 Anas platyrhynchos 96.38 4.00e-153 531.00
IUUC-Aca-004901 Anolis carolinensis 95.80 0.00e+00 724.00
IUUC-Aly-005822 Arabidopsis lyrata 97.12 0.00e+00 741.00
IUUC-Ath-007492 Arabidopsis thaliana 97.12 0.00e+00 741.00
IUUC-Ago-007937 Ashbya gossypii 100.00 0.00e+00 747.00
IUUC-Acl-008108 Aspergillus clavatus 99.67 2.00e-173 598.00
IUUC-Afl-008740 Aspergillus flavus 100.00 3.00e-173 598.00
IUUC-Afu-009031 Aspergillus fumigatus 96.50 7.00e-171 590.00
IUUC-Ani-009444 Aspergillus nidulans 99.01 4.00e-172 594.00
IUUC-Ang-009646 Aspergillus niger 98.68 9.00e-172 593.00
IUUC-Aor-009964 Aspergillus oryzae 100.00 3.00e-173 598.00
IUUC-Ate-010298 Aspergillus terreus 100.00 3.00e-173 598.00
IUUC-Ame-011696 Astyanax mexicanus 93.68 0.00e+00 703.00
IUUC-Bta-012771 Bos taurus 95.74 4.00e-168 581.00
IUUC-Bci-013832 Botrytis cinerea 98.68 3.00e-172 595.00
IUUC-Bdi-015013 Brachypodium distachyon 97.37 0.00e+00 740.00
IUUC-Bol-015820 Brassica oleracea 97.11 0.00e+00 740.00
IUUC-Bra-017586 Brassica rapa 96.96 6.00e-128 447.00
IUUC-Cel-018571 Caenorhabditis elegans 95.80 0.00e+00 733.00
IUUC-Cja-019812 Callithrix jacchus 95.80 0.00e+00 726.00
IUUC-Cfa-020579 Canis familiaris 95.80 0.00e+00 724.00
IUUC-Cre-022556 Chlamydomonas reinhardtii 96.05 2.00e-82 295.00
IUUC-Csa-024086 Chlorocebus sabaeus 96.05 7.00e-125 437.00
IUUC-Cin-025600 Ciona intestinalis 95.80 0.00e+00 735.00
IUUC-Csv-026265 Ciona savignyi 97.11 0.00e+00 737.00
IUUC-Cgl-026543 Colletotrichum gloeosporioides 100.00 1.00e-128 449.00
IUUC-Cne-026938 Cryptococcus neoformans 98.43 0.00e+00 744.00
IUUC-Dre-028321 Danio rerio 95.80 0.00e+00 726.00
IUUC-Dno-029812 Dasypus novemcinctus 95.80 0.00e+00 724.00
IUUC-Dor-031044 Dipodomys ordii 95.65 1.00e-73 266.00
IUUC-Dse-031434 Dothistroma septosporum 100.00 1.00e-128 449.00
IUUC-Dme-031687 Drosophila melanogaster 95.80 0.00e+00 725.00
IUUC-Eca-033850 Equus caballus 95.63 5.00e-125 437.00
IUUC-Fca-036501 Felis catus 95.63 5.00e-125 437.00
IUUC-Fal-036678 Ficedula albicollis 95.74 4.00e-168 581.00
IUUC-Fox-037730 Fusarium oxysporum 99.56 2.00e-128 449.00
IUUC-Fso-038454 Fusarium solani 99.67 5.00e-173 597.00
IUUC-Ggr-040118 Gaeumannomyces graminis 100.00 3.00e-173 598.00
IUUC-Gga-041058 Gallus gallus 96.05 4.00e-168 581.00
IUUC-Gac-042568 Gasterosteus aculeatus 96.05 0.00e+00 725.00
IUUC-Gma-043051 Glycine max 97.38 0.00e+00 740.00
IUUC-Ggo-044799 Gorilla gorilla 95.54 0.00e+00 723.00
IUUC-Hsa-046405 Homo sapiens 95.80 0.00e+00 725.00
IUUC-Hvu-047805 Hordeum vulgare 34.31 4.00e-39 153.00
IUUC-Itr-048563 Ictidomys tridecemlineatus 92.31 9.00e-44 165.00
IUUC-Kpa-049199 Komagataella pastoris 100.00 2.00e-173 599.00
IUUC-Lpe-050731 Leersia perrieri 35.05 9.00e-44 168.00
IUUC-Lma-053015 Leptosphaeria maculans 98.71 2.00e-174 602.00
IUUC-Laf-053548 Loxodonta africana 95.80 0.00e+00 724.00
IUUC-Mcc-055561 Macaca mulatta 95.80 0.00e+00 726.00
IUUC-Mor-056991 Magnaporthe oryzae 100.00 3.00e-173 598.00
IUUC-Mpo-057384 Magnaporthe poae 100.00 3.00e-173 598.00
IUUC-Mtr-058615 Medicago truncatula 97.11 0.00e+00 740.00
IUUC-Mla-058957 Melampsora laricipopulina 97.11 0.00e+00 740.00
IUUC-Mga-059240 Meleagris gallopavo 94.41 4.00e-85 304.00
IUUC-Mmr-061259 Microcebus murinus 90.83 6.00e-115 404.00
IUUC-Mdo-062630 Monodelphis domestica 95.80 0.00e+00 725.00
IUUC-Mmu-063593 Mus musculus 95.80 0.00e+00 727.00
IUUC-Mac-065145 Musa acuminata 88.16 9.00e-72 259.00
IUUC-Mpu-066106 Mustela putorius furo 80.98 3.00e-135 471.00
IUUC-Mlu-068100 Myotis lucifugus 95.74 3.00e-168 581.00
IUUC-Nfi-068475 Neosartorya fischeri 99.67 2.00e-173 598.00
IUUC-Ncr-068770 Neurospora crassa 98.68 8.00e-171 590.00
IUUC-Nle-069526 Nomascus leucogenys 95.74 3.00e-168 581.00
IUUC-Opr-070947 Ochotona princeps 96.05 7.00e-125 437.00
IUUC-Oan-073470 Ornithorhynchus anatinus 95.80 0.00e+00 724.00
IUUC-Ocu-074508 Oryctolagus cuniculus 95.63 5.00e-125 437.00
IUUC-Oba-075152 Oryza barthii 35.08 1.00e-42 164.00
IUUC-Obr-076236 Oryza brachyantha 97.11 0.00e+00 740.00
IUUC-Ogl-077274 Oryza glaberrima 92.11 0.00e+00 686.00
IUUC-Ogu-078628 Oryza glumaepatula 94.81 1.00e-38 152.00
IUUC-Oin-079436 Oryza indica 97.38 0.00e+00 741.00
IUUC-Olo-080418 Oryza longistaminata 34.35 8.00e-31 125.00
IUUC-Ome-081397 Oryza meridionalis 34.31 8.00e-42 162.00
IUUC-Oni-082299 Oryza nivara 34.10 2.00e-41 160.00
IUUC-Opu-083917 Oryza punctata 29.44 1.00e-29 123.00
IUUC-Oru-084544 Oryza rufipogon 79.61 8.00e-62 226.00
IUUC-Osa-085328 Oryza sativa 97.37 0.00e+00 739.00
IUUC-Ola-087192 Oryzias latipes 95.54 0.00e+00 719.00
IUUC-Olu-087888 Ostreococcus lucimarinus 97.11 0.00e+00 740.00
IUUC-Oga-089171 Otolemur garnettii 95.42 7.00e-82 293.00
IUUC-Oar-089386 Ovis aries 89.50 0.00e+00 668.00
IUUC-Ptr-091261 Pan troglodytes 95.80 0.00e+00 724.00
IUUC-Pan-092134 Papio anubis 95.80 0.00e+00 725.00
IUUC-Psi-093239 Pelodiscus sinensis 69.03 2.00e-135 473.00
IUUC-Pma-094556 Petromyzon marinus 95.80 0.00e+00 726.00
IUUC-Pno-095087 Phaeosphaeria nodorum 99.13 9.00e-129 450.00
IUUC-Ppa-095624 Physcomitrella patens 97.38 0.00e+00 738.00
IUUC-Pfo-096371 Poecilia formosa 91.70 3.00e-126 441.00
IUUC-Pab-097884 Pongo abelii 95.80 0.00e+00 725.00
IUUC-Pop-099396 Populus trichocarpa 97.37 0.00e+00 739.00
IUUC-Pca-100992 Procavia capensis 95.69 0.00e+00 659.00
IUUC-Ppe-102064 Prunus persica 97.38 0.00e+00 741.00
IUUC-Pva-102696 Pteropus vampyrus 95.63 5.00e-125 437.00
IUUC-Pgr-103301 Puccinia graminis 97.11 0.00e+00 739.00
IUUC-Ptt-103710 Puccinia triticina 97.37 1.00e-171 593.00
IUUC-Pte-104277 Pyrenophora teres 100.00 1.00e-128 449.00
IUUC-Pyt-104779 Pyrenophora triticirepentis 100.00 1.00e-128 449.00
IUUC-Rno-105199 Rattus norvegicus 95.80 0.00e+00 727.00
IUUC-Sce-106142 Saccharomyces cerevisiae 100.00 0.00e+00 747.00
IUUC-Sha-106780 Sarcophilus harrisii 94.75 7.00e-165 570.00
IUUC-Sja-107825 Schizosaccharomyces japonicus 99.48 0.00e+00 748.00
IUUC-Ssl-108565 Sclerotinia sclerotiorum 98.36 2.00e-171 592.00
IUUC-Smo-109245 Selaginella moellendorffii 96.86 0.00e+00 739.00
IUUC-Sit-110644 Setaria italica 97.11 0.00e+00 744.00
IUUC-Sly-111036 Solanum lycopersicum 97.11 0.00e+00 740.00
IUUC-Stu-112256 Solanum tuberosum 97.12 0.00e+00 741.00
IUUC-Sbi-114611 Sorghum bicolor 97.37 0.00e+00 740.00
IUUC-Ssc-115672 Sus scrofa 95.80 0.00e+00 725.00
IUUC-Tgu-116620 Taeniopygia guttata 92.07 4.00e-150 521.00
IUUC-Tsy-119558 Tarsius syrichta 86.27 9.00e-72 259.00
IUUC-Tni-120338 Tetraodon nigroviridis 96.05 1.00e-81 293.00
IUUC-Tca-121303 Theobroma cacao 97.37 0.00e+00 740.00
IUUC-Tre-122012 Trichoderma reesei 100.00 3.00e-173 598.00
IUUC-Tvi-122369 Trichoderma virens 100.00 3.00e-173 598.00
IUUC-Tae-125736 Triticum aestivum 97.37 0.00e+00 740.00
IUUC-Tur-126025 Triticum urartu 97.11 0.00e+00 744.00
IUUC-Tme-127032 Tuber melanosporum 100.00 3.00e-173 598.00
IUUC-Ttr-128311 Tursiops truncatus 95.80 0.00e+00 724.00
IUUC-Uma-129417 Ustilago maydis 98.43 0.00e+00 744.00
IUUC-Vda-129663 Verticillium dahliae 100.00 1.00e-128 449.00
IUUC-Vvi-131604 Vitis vinifera 97.37 0.00e+00 741.00
IUUC-Xtr-132052 Xenopus tropicalis 95.28 0.00e+00 720.00
IUUC-Yli-134420 Yarrowia lipolytica 99.74 0.00e+00 747.00
IUUC-Zma-135881 Zea mays 97.11 0.00e+00 740.00
Created Date 25-Jun-2017

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