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Tag Content
UUCD2 ID IUUC-Itr-048965
UUCD1 version UUC-SpT-00255
Ensembl Protein ID ENSSTOP00000021203.1
UniProt Accession I3NA06; I3NA06_ICTTR
Genbank Protein ID ENSSTOP00000021203
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AGTP01106984
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSTOG00000021829.1 ENSSTOT00000023559.1 ENSSTOP00000021203.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 1.40e-11 43.8 435 457
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqf 23
    r+kQ+++D++LA+qLQ+E++++
   Q: 435 RHKQEEQDRLLALQLQKEVDKEL 457
    8*******************985 PP
   

Organism Ictidomys tridecemlineatus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MALPKDAIPS LSECQCQICV EILIEPVTLP CNHTLCNPCF QSTVEKANLC CPFCRRRVSS 60
WTRYHTRKNS LINMELWETI QKHYPKECKL RISGQGSEEI VDDYQPIRLL SEPGELRREY 120
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Protein Fasta Sequence



>IUUC-Itr-048965|UBD,MIU|Ictidomys tridecemlineatus
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Nucleotide Sequence
(Fasta)
ATGGCTCTAC CCAAGGACGC CATCCCTTCC TTGTCGGAAT GCCAGTGCCA GATCTGTGTG 60
GAAATCCTAA TCGAGCCCGT AACCCTCCCA TGTAACCACA CGCTCTGTAA TCCGTGCTTC 120
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Nucleotide Fasta Sequence



>IUUC-Itr-048965|UBD,MIU|Ictidomys tridecemlineatus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 76.33 0.00e+00 712.00
IUUC-Apl-003963 Anas platyrhynchos 44.32 2.00e-70 259.00
IUUC-Aca-004420 Anolis carolinensis 64.29 3.00e-46 179.00
IUUC-Ame-011521 Astyanax mexicanus 55.17 2.00e-37 150.00
IUUC-Bta-013002 Bos taurus 72.01 0.00e+00 702.00
IUUC-Cja-019945 Callithrix jacchus 72.97 0.00e+00 679.00
IUUC-Cfa-020533 Canis familiaris 75.09 0.00e+00 717.00
IUUC-Cpo-021643 Cavia porcellus 62.41 1.00e-141 496.00
IUUC-Csa-023638 Chlorocebus sabaeus 72.66 0.00e+00 711.00
IUUC-Cho-024319 Choloepus hoffmanni 73.99 0.00e+00 653.00
IUUC-Cin-025679 Ciona intestinalis 35.19 9.00e-20 90.50
IUUC-Csv-026052 Ciona savignyi 36.36 3.00e-19 88.20
IUUC-Dre-028519 Danio rerio 45.54 1.00e-36 146.00
IUUC-Dno-029294 Dasypus novemcinctus 76.01 0.00e+00 712.00
IUUC-Ete-032714 Echinops telfairi 50.52 2.00e-77 283.00
IUUC-Eca-033343 Equus caballus 76.17 0.00e+00 725.00
IUUC-Eeu-034633 Erinaceus europaeus 32.81 3.00e-16 79.00
IUUC-Fca-036251 Felis catus 75.35 0.00e+00 725.00
IUUC-Fal-037048 Ficedula albicollis 44.68 2.00e-75 276.00
IUUC-Gmo-039400 Gadus morhua 44.35 4.00e-31 125.00
IUUC-Gga-040444 Gallus gallus 41.16 2.00e-67 249.00
IUUC-Gac-041735 Gasterosteus aculeatus 45.81 2.00e-34 139.00
IUUC-Ggo-044940 Gorilla gorilla 67.42 7.00e-138 483.00
IUUC-Hsa-046424 Homo sapiens 73.37 0.00e+00 692.00
IUUC-Lch-050649 Latimeria chalumnae 41.20 2.00e-58 219.00
IUUC-Loc-051847 Lepisosteus oculatus 36.14 8.00e-45 174.00
IUUC-Laf-053938 Loxodonta africana 68.30 0.00e+00 704.00
IUUC-Mcc-055360 Macaca mulatta 72.31 0.00e+00 687.00
IUUC-Meu-056684 Macropus eugenii 51.05 3.00e-115 408.00
IUUC-Mga-059699 Meleagris gallopavo 41.39 3.00e-72 265.00
IUUC-Mmr-060779 Microcebus murinus 77.70 0.00e+00 783.00
IUUC-Mdo-062225 Monodelphis domestica 54.67 8.00e-119 420.00
IUUC-Mmu-064239 Mus musculus 64.79 3.00e-158 551.00
IUUC-Mpu-066141 Mustela putorius furo 75.00 0.00e+00 730.00
IUUC-Mlu-067945 Myotis lucifugus 73.81 0.00e+00 699.00
IUUC-Nle-069769 Nomascus leucogenys 73.54 0.00e+00 705.00
IUUC-Opr-070905 Ochotona princeps 63.49 2.00e-168 585.00
IUUC-Ont-071477 Oreochromis niloticus 52.17 3.00e-35 142.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.81 5.00e-59 221.00
IUUC-Ocu-073832 Oryctolagus cuniculus 70.39 0.00e+00 641.00
IUUC-Oga-088318 Otolemur garnettii 76.01 0.00e+00 724.00
IUUC-Oar-089647 Ovis aries 70.77 0.00e+00 685.00
IUUC-Ptr-090516 Pan troglodytes 73.54 0.00e+00 715.00
IUUC-Pan-092302 Papio anubis 72.18 0.00e+00 689.00
IUUC-Psi-093604 Pelodiscus sinensis 41.68 9.00e-80 290.00
IUUC-Pfo-096441 Poecilia formosa 50.00 2.00e-33 136.00
IUUC-Pab-097729 Pongo abelii 72.84 0.00e+00 701.00
IUUC-Pca-100552 Procavia capensis 59.32 2.00e-107 382.00
IUUC-Pva-102780 Pteropus vampyrus 75.92 0.00e+00 726.00
IUUC-Rno-105461 Rattus norvegicus 65.02 2.00e-163 568.00
IUUC-Sha-106809 Sarcophilus harrisii 57.17 1.00e-140 493.00
IUUC-Sly-111317 Solanum lycopersicum 37.00 7.00e-15 74.70
IUUC-Sar-113579 Sorex araneus 60.99 1.00e-157 549.00
IUUC-Tgu-117187 Taeniopygia guttata 65.08 9.00e-47 179.00
IUUC-Tru-118182 Takifugu rubripes 48.76 1.00e-33 136.00
IUUC-Tsy-119217 Tarsius syrichta 57.06 7.00e-61 227.00
IUUC-Tni-120205 Tetraodon nigroviridis 52.46 1.00e-35 142.00
IUUC-Tbe-127622 Tupaia belangeri 72.97 0.00e+00 701.00
IUUC-Ttr-128988 Tursiops truncatus 77.74 0.00e+00 759.00
IUUC-Vpa-130302 Vicugna pacos 67.26 4.00e-125 441.00
Created Date 25-Jun-2017

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