iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	97.43	0.00e+00	834.00	IUUC-Hsa-045977

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MKRGGRDSDQ DSPEEGTAEK PKKPRTTHEC SQPCDWGNLL QDIVLHVFKY LPLLDRAHAS 60
QVCRNWNQVF HMPDLWRCFE FELNQPATSY LKATHPELIK QIIKRHSNHL QYVSFKVDSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGGCTCGGG GCTCGCTGCT GTTGGCTGCT GTTGGCCGCT GCTCGCCGAG GGCGTCTCGG 60
GCGGCGACGA GGAGGTGCCG GGGCGAAGGA CGCAGACTGC GCGGGACAGA GAAAGGAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like

Pfam

PF00646--F-box

SMART

SM00256--FBOX

Gene Ontology

GO:0005829--C:cytosol
GO:0016604--C:nuclear body
GO:0019005--C:SCF ubiquitin ligase complex
GO:0004842--F:ubiquitin-protein transferase activity
GO:0043153--P:entrainment of circadian clock by photoperiod
GO:0031648--P:protein destabilization
GO:0031146--P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

KEGG

rno:306129

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000400	Aegilops tauschii	35.00	7.00e-04	37.40
IUUC-Aml-001552	Ailuropoda melanoleuca	97.43	0.00e+00	832.00
IUUC-Atr-003025	Amborella trichopoda	26.97	2.00e-05	40.80
IUUC-Apl-003485	Anas platyrhynchos	96.73	0.00e+00	771.00
IUUC-Aca-004566	Anolis carolinensis	90.37	0.00e+00	754.00
IUUC-Ath-007384	Arabidopsis thaliana	31.94	5.00e-03	34.70
IUUC-Ame-011238	Astyanax mexicanus	84.65	0.00e+00	707.00
IUUC-Bta-013292	Bos taurus	99.36	8.00e-176	609.00
IUUC-Cja-019876	Callithrix jacchus	97.43	0.00e+00	833.00
IUUC-Cfa-020674	Canis familiaris	97.43	0.00e+00	833.00
IUUC-Cpo-021869	Cavia porcellus	97.77	0.00e+00	780.00
IUUC-Csa-023044	Chlorocebus sabaeus	97.20	0.00e+00	832.00
IUUC-Cho-024975	Choloepus hoffmanni	86.92	0.00e+00	731.00
IUUC-Cin-025430	Ciona intestinalis	21.21	5.00e-11	62.00
IUUC-Dre-028332	Danio rerio	86.02	0.00e+00	707.00
IUUC-Dno-028870	Dasypus novemcinctus	96.96	0.00e+00	828.00
IUUC-Dor-030514	Dipodomys ordii	97.43	0.00e+00	833.00
IUUC-Ete-032477	Echinops telfairi	96.54	0.00e+00	717.00
IUUC-Eca-034141	Equus caballus	96.73	0.00e+00	825.00
IUUC-Eeu-035046	Erinaceus europaeus	96.03	0.00e+00	801.00
IUUC-Fca-035829	Felis catus	97.20	0.00e+00	831.00
IUUC-Fal-037609	Ficedula albicollis	89.84	0.00e+00	767.00
IUUC-Gmo-039537	Gadus morhua	87.82	0.00e+00	687.00
IUUC-Gga-040363	Gallus gallus	75.69	0.00e+00	670.00
IUUC-Gac-042440	Gasterosteus aculeatus	82.46	0.00e+00	702.00
IUUC-Ggo-045342	Gorilla gorilla	97.43	0.00e+00	833.00
IUUC-Hsa-045977	Homo sapiens	97.43	0.00e+00	834.00
IUUC-Itr-048500	Ictidomys tridecemlineatus	96.96	0.00e+00	807.00
IUUC-Lch-049981	Latimeria chalumnae	92.39	0.00e+00	733.00
IUUC-Loc-052324	Lepisosteus oculatus	87.27	0.00e+00	726.00
IUUC-Laf-053399	Loxodonta africana	96.50	0.00e+00	825.00
IUUC-Mcc-054813	Macaca mulatta	97.20	0.00e+00	832.00
IUUC-Meu-056017	Macropus eugenii	94.63	0.00e+00	799.00
IUUC-Mga-059960	Meleagris gallopavo	76.16	0.00e+00	670.00
IUUC-Mmr-060711	Microcebus murinus	96.73	0.00e+00	828.00
IUUC-Mdo-062234	Monodelphis domestica	95.58	0.00e+00	819.00
IUUC-Mmu-063181	Mus musculus	99.07	0.00e+00	848.00
IUUC-Mpu-066368	Mustela putorius furo	97.43	0.00e+00	833.00
IUUC-Mlu-067492	Myotis lucifugus	93.46	0.00e+00	792.00
IUUC-Nle-069358	Nomascus leucogenys	96.73	0.00e+00	827.00
IUUC-Opr-070436	Ochotona princeps	95.79	0.00e+00	811.00
IUUC-Ont-072618	Oreochromis niloticus	89.62	0.00e+00	707.00
IUUC-Oan-073386	Ornithorhynchus anatinus	93.06	0.00e+00	787.00
IUUC-Ocu-073808	Oryctolagus cuniculus	96.73	0.00e+00	825.00
IUUC-Oba-075035	Oryza barthii	27.85	1.00e-03	35.80
IUUC-Ogl-077859	Oryza glaberrima	36.17	8.00e-04	39.70
IUUC-Ome-081689	Oryza meridionalis	36.17	8.00e-04	39.70
IUUC-Oni-083118	Oryza nivara	36.17	8.00e-04	39.70
IUUC-Opu-083603	Oryza punctata	36.17	5.00e-04	40.40
IUUC-Oru-085225	Oryza rufipogon	36.17	8.00e-04	39.70
IUUC-Ola-087039	Oryzias latipes	82.11	0.00e+00	709.00
IUUC-Oga-088421	Otolemur garnettii	96.50	0.00e+00	805.00
IUUC-Oar-090329	Ovis aries	97.81	0.00e+00	800.00
IUUC-Ptr-091390	Pan troglodytes	97.43	0.00e+00	834.00
IUUC-Pan-092155	Papio anubis	96.26	0.00e+00	816.00
IUUC-Psi-093540	Pelodiscus sinensis	91.45	0.00e+00	787.00
IUUC-Pfo-096760	Poecilia formosa	89.87	0.00e+00	706.00
IUUC-Pab-097896	Pongo abelii	97.43	0.00e+00	834.00
IUUC-Pca-100935	Procavia capensis	93.88	3.00e-148	517.00
IUUC-Pva-102705	Pteropus vampyrus	97.43	0.00e+00	836.00
IUUC-Pyt-104677	Pyrenophora triticirepentis	23.47	2.10e-02	33.10
IUUC-Sha-107356	Sarcophilus harrisii	94.65	0.00e+00	811.00
IUUC-Sit-109906	Setaria italica	29.58	2.50e-02	32.70
IUUC-Sar-113189	Sorex araneus	97.09	0.00e+00	795.00
IUUC-Sre-114931	Sporisorium reilianum	28.45	2.00e-03	37.70
IUUC-Ssc-115570	Sus scrofa	97.20	0.00e+00	828.00
IUUC-Tgu-116972	Taeniopygia guttata	96.22	0.00e+00	761.00
IUUC-Tru-117842	Takifugu rubripes	86.96	0.00e+00	706.00
IUUC-Tsy-119232	Tarsius syrichta	96.96	0.00e+00	828.00
IUUC-Tni-120727	Tetraodon nigroviridis	84.44	0.00e+00	709.00
IUUC-Tca-121081	Theobroma cacao	45.71	2.00e-03	38.90
IUUC-Tre-122087	Trichoderma reesei	30.68	1.60e-02	33.50
IUUC-Tur-126585	Triticum urartu	30.00	4.00e-04	38.10
IUUC-Tbe-127552	Tupaia belangeri	93.92	0.00e+00	711.00
IUUC-Ttr-128903	Tursiops truncatus	96.50	0.00e+00	824.00
IUUC-Vpa-130347	Vicugna pacos	96.50	0.00e+00	820.00
IUUC-Xtr-131886	Xenopus tropicalis	89.61	0.00e+00	771.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence