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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-105508
Ensembl Protein ID ENSRNOP00000017885.7
UniProt Accession F1M9Y8; F1M9Y8_RAT
Genbank Protein ID ENSRNOP00000017885
Protein Name Trinucleotide repeat-containing 6a
Genbank Nucleotide ID AABR07005665
Gene Name Tnrc6a
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000024737.6 ENSRNOT00000086492.1 ENSRNOP00000071070.1
ENSRNOG00000024737.6 ENSRNOT00000017885.7 ENSRNOP00000017885.7
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/UBA 35.90 3.00e-34 145.00 IUUC-Dme-032014
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MRELEAKATK DVERNLSRDL VQEEEQLMEE KKRKKDDKKK KEAAQKKATE QKIKVPEQIK 60
PSVSQPQPAN SDNGTSTATS TNNNAKRATA SNQQPPPPQQ QPQQQQQQQQ QQQEQQQQQQ 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-105508|UBD,UBA|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCGGCGGCAG CGGTGGCGGC GGCGGCGGCG GCAGCGGGAC GGTGTAGAAA ATGGCGCTGG 60
TGCAGCGGCT CGGGCCTGTC CCCGCGGCGC TGCGGAGGGC TTGAGGCTCG CGAGCCTCGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105508|UBD,UBA|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR019486--Argonaute_hook_dom
IPR026805--GW182_M_dom
IPR000536--Nucl_hrmn_rcpt_lig-bd
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR032226--TNRC6_PABC-bd
IPR033501--TNRC6A

Pfam

PF10427--Ago_hook
PF12938--M_domain
PF16608--TNRC6-PABC_bdg

Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding
GO:0035278--P:miRNA mediated inhibition of translation

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001985 Ailuropoda melanoleuca 91.88 0.00e+00 2836.00
IUUC-Apl-003191 Anas platyrhynchos 43.75 0.00e+00 687.00
IUUC-Aca-004717 Anolis carolinensis 42.47 0.00e+00 655.00
IUUC-Ame-010681 Astyanax mexicanus 42.53 8.00e-73 269.00
IUUC-Bta-012915 Bos taurus 92.81 0.00e+00 2757.00
IUUC-Cja-019614 Callithrix jacchus 40.11 7.00e-161 562.00
IUUC-Cfa-020452 Canis familiaris 94.07 0.00e+00 2860.00
IUUC-Cpo-021452 Cavia porcellus 41.32 3.00e-93 337.00
IUUC-Csa-023169 Chlorocebus sabaeus 92.21 0.00e+00 2816.00
IUUC-Cho-024655 Choloepus hoffmanni 85.85 0.00e+00 2088.00
IUUC-Dre-028059 Danio rerio 40.90 7.00e-125 442.00
IUUC-Dno-029734 Dasypus novemcinctus 89.35 0.00e+00 2786.00
IUUC-Dor-030671 Dipodomys ordii 91.04 0.00e+00 1910.00
IUUC-Dme-032014 Drosophila melanogaster 35.90 3.00e-30 128.00
IUUC-Ete-032774 Echinops telfairi 47.77 5.00e-87 317.00
IUUC-Eca-033866 Equus caballus 41.05 1.00e-168 588.00
IUUC-Eeu-034572 Erinaceus europaeus 48.80 3.00e-43 171.00
IUUC-Fal-036856 Ficedula albicollis 42.67 4.00e-143 503.00
IUUC-Gga-040531 Gallus gallus 40.43 4.00e-90 327.00
IUUC-Gac-041681 Gasterosteus aculeatus 44.58 1.00e-77 285.00
IUUC-Ggo-045143 Gorilla gorilla 40.74 5.00e-172 599.00
IUUC-Hsa-045913 Homo sapiens 40.19 2.00e-170 593.00
IUUC-Lch-049619 Latimeria chalumnae 65.79 0.00e+00 1989.00
IUUC-Loc-052289 Lepisosteus oculatus 50.63 2.00e-89 325.00
IUUC-Laf-053607 Loxodonta africana 45.14 4.00e-93 337.00
IUUC-Mcc-055342 Macaca mulatta 40.01 2.00e-160 560.00
IUUC-Meu-056275 Macropus eugenii 83.39 0.00e+00 1252.00
IUUC-Mga-059241 Meleagris gallopavo 77.68 0.00e+00 2377.00
IUUC-Mmr-061348 Microcebus murinus 94.57 0.00e+00 2914.00
IUUC-Mdo-062155 Monodelphis domestica 40.32 1.00e-94 342.00
IUUC-Mmu-064259 Mus musculus 94.71 0.00e+00 2208.00
IUUC-Mpu-066534 Mustela putorius furo 82.34 0.00e+00 2342.00
IUUC-Mlu-067834 Myotis lucifugus 88.67 0.00e+00 2783.00
IUUC-Nle-069168 Nomascus leucogenys 91.56 0.00e+00 2803.00
IUUC-Opr-070976 Ochotona princeps 38.57 1.00e-103 372.00
IUUC-Ocu-073749 Oryctolagus cuniculus 89.55 0.00e+00 2717.00
IUUC-Oga-088116 Otolemur garnettii 92.00 0.00e+00 2829.00
IUUC-Oar-090041 Ovis aries 93.25 0.00e+00 2643.00
IUUC-Ptr-091135 Pan troglodytes 41.09 7.00e-167 582.00
IUUC-Pan-092665 Papio anubis 40.86 2.00e-161 563.00
IUUC-Psi-093057 Pelodiscus sinensis 41.50 0.00e+00 633.00
IUUC-Pma-094508 Petromyzon marinus 41.05 6.00e-44 172.00
IUUC-Pfo-097115 Poecilia formosa 39.92 6.00e-65 242.00
IUUC-Pab-097935 Pongo abelii 91.83 0.00e+00 2806.00
IUUC-Pca-100481 Procavia capensis 47.56 1.00e-81 299.00
IUUC-Pva-102376 Pteropus vampyrus 42.52 2.00e-104 374.00
IUUC-Sar-113036 Sorex araneus 46.33 2.00e-42 168.00
IUUC-Ssc-115574 Sus scrofa 47.46 2.00e-66 248.00
IUUC-Tgu-117233 Taeniopygia guttata 41.61 6.00e-174 605.00
IUUC-Tru-117725 Takifugu rubripes 39.30 2.00e-115 410.00
IUUC-Tsy-118786 Tarsius syrichta 39.65 4.00e-94 340.00
IUUC-Tbe-127551 Tupaia belangeri 89.76 0.00e+00 2667.00
IUUC-Ttr-128518 Tursiops truncatus 46.31 1.00e-95 345.00
IUUC-Vpa-130230 Vicugna pacos 83.83 0.00e+00 1157.00
IUUC-Xtr-132265 Xenopus tropicalis 47.28 6.00e-86 313.00
Created Date 25-Jun-2017

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