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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108351
UUCD1 version UUC-ScP-00216
Ensembl Protein ID SPBC1711.07.1:pep
UniProt Accession Q9P783; RRB1_SCHPO
Genbank Protein ID CAB88237.1
Protein Name Ribosome assembly protein rrb1
Genbank Nucleotide ID CU329671
Gene Name rrb1; SPBC1711.07
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC1711.07 SPBC1711.07.1 SPBC1711.07.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexMentha
Post-translational Modifications (PTMs)
dbPAFdbPTMUniProt
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.30e-17 61.3 290 323
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           Ht+ v +l++  s+ + ++s+s Dgt ++WD+r 
   Q: 290  HTAAVEDLQWspSEkNVFSSCSCDGTFRIWDVRN 323
           99*********777999**************985 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA (By similarity).
 Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA (By similarity).
Protein Sequence
(Fasta)
MSKRAAEETV EFNSKNGPGQ RGTVADNVDT EMGEFEDAYE DEIESEEEYI EADGEKDNGM 60
DEEEQNDAQP SKIPWLPGGK INADEKLVAD PSVYEMLHNI QVKWPFLSFD ILQDSLGEER 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Spo-108351|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ACCAAACAAA AATTTATTAC TCTGAAAACT CTTAACTGAG TTCTCAAAAT TCGTAACTAG 60
CTCAAAGAAG TAAACATAAT ATAATTAAAA ACATCAAACA TTTTGTAGAC AAAATGATTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Spo-108351|E3,WD_repeat|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0043234--C:protein complex
GO:0042254--P:ribosome biogenesis
GO:0006364--P:rRNA processing
KEGG spo:SPBC1711.07
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000677 Aegilops tauschii 37.16 3.00e-73 266.00
IUUC-Aml-002309 Ailuropoda melanoleuca 40.19 5.00e-84 302.00
IUUC-Atr-002461 Amborella trichopoda 39.86 2.00e-81 294.00
IUUC-Aca-004760 Anolis carolinensis 39.81 3.00e-80 290.00
IUUC-Aly-005405 Arabidopsis lyrata 39.59 2.00e-82 297.00
IUUC-Ath-007178 Arabidopsis thaliana 39.23 9.00e-83 298.00
IUUC-Ago-007735 Ashbya gossypii 44.25 6.00e-99 352.00
IUUC-Acl-008294 Aspergillus clavatus 46.32 4.00e-107 379.00
IUUC-Afl-008486 Aspergillus flavus 46.00 9.00e-104 368.00
IUUC-Afu-009019 Aspergillus fumigatus 46.52 4.00e-109 386.00
IUUC-Ani-009465 Aspergillus nidulans 47.63 3.00e-104 370.00
IUUC-Ang-009641 Aspergillus niger 45.20 8.00e-107 378.00
IUUC-Ate-010426 Aspergillus terreus 45.53 1.00e-106 378.00
IUUC-Ame-010856 Astyanax mexicanus 41.53 5.00e-85 305.00
IUUC-Bgr-012258 Blumeria graminis 45.72 1.00e-94 338.00
IUUC-Bta-012437 Bos taurus 40.43 1.00e-84 304.00
IUUC-Bci-013647 Botrytis cinerea 46.62 1.00e-103 368.00
IUUC-Bdi-014728 Brachypodium distachyon 38.99 3.00e-83 300.00
IUUC-Bol-015126 Brassica oleracea 40.18 6.00e-83 299.00
IUUC-Bra-016700 Brassica rapa 45.32 2.00e-47 181.00
IUUC-Cel-018454 Caenorhabditis elegans 35.83 9.00e-78 281.00
IUUC-Cja-018859 Callithrix jacchus 40.05 2.00e-85 307.00
IUUC-Cfa-020912 Canis familiaris 40.28 9.00e-85 305.00
IUUC-Cpo-021368 Cavia porcellus 40.69 8.00e-86 308.00
IUUC-Cre-022850 Chlamydomonas reinhardtii 39.08 1.00e-36 145.00
IUUC-Csa-023599 Chlorocebus sabaeus 39.49 3.00e-84 303.00
IUUC-Cin-025718 Ciona intestinalis 42.93 7.00e-88 315.00
IUUC-Csv-025806 Ciona savignyi 44.44 6.00e-70 255.00
IUUC-Cgl-026766 Colletotrichum gloeosporioides 43.37 3.00e-85 306.00
IUUC-Cne-026781 Cryptococcus neoformans 45.39 5.00e-96 342.00
IUUC-Cme-027129 Cyanidioschyzon merolae 32.36 2.00e-45 174.00
IUUC-Dre-028225 Danio rerio 40.76 3.00e-80 290.00
IUUC-Dno-029792 Dasypus novemcinctus 39.73 2.00e-78 284.00
IUUC-Dor-030773 Dipodomys ordii 52.43 1.00e-30 125.00
IUUC-Dse-031289 Dothistroma septosporum 46.90 5.00e-101 359.00
IUUC-Dme-031676 Drosophila melanogaster 39.53 8.00e-88 315.00
IUUC-Ete-033042 Echinops telfairi 50.96 5.00e-23 100.00
IUUC-Eca-033618 Equus caballus 40.43 5.00e-83 299.00
IUUC-Fca-036102 Felis catus 39.46 6.00e-83 299.00
IUUC-Fox-037899 Fusarium oxysporum 46.58 2.00e-105 374.00
IUUC-Fso-038130 Fusarium solani 46.14 2.00e-104 370.00
IUUC-Gmo-038741 Gadus morhua 42.48 2.00e-83 300.00
IUUC-Ggr-040086 Gaeumannomyces graminis 46.54 3.00e-102 363.00
IUUC-Gac-042243 Gasterosteus aculeatus 41.67 2.00e-83 300.00
IUUC-Gma-044177 Glycine max 42.01 1.00e-82 298.00
IUUC-Ggo-044564 Gorilla gorilla 39.11 9.00e-85 305.00
IUUC-Hsa-046021 Homo sapiens 39.25 1.00e-84 304.00
IUUC-Hvu-047721 Hordeum vulgare 37.76 1.00e-79 288.00
IUUC-Itr-048189 Ictidomys tridecemlineatus 41.42 4.00e-85 306.00
IUUC-Kpa-049271 Komagataella pastoris 43.28 4.00e-96 343.00
IUUC-Lch-049974 Latimeria chalumnae 37.35 3.00e-76 277.00
IUUC-Lpe-051388 Leersia perrieri 33.96 5.00e-69 253.00
IUUC-Lma-053010 Leptosphaeria maculans 46.58 1.00e-106 378.00
IUUC-Laf-054058 Loxodonta africana 39.28 4.00e-85 306.00
IUUC-Mcc-055246 Macaca mulatta 39.50 2.00e-85 307.00
IUUC-Meu-056795 Macropus eugenii 38.55 1.00e-78 285.00
IUUC-Mor-057175 Magnaporthe oryzae 46.41 7.00e-104 369.00
IUUC-Mpo-057388 Magnaporthe poae 42.13 5.00e-85 306.00
IUUC-Mtr-057752 Medicago truncatula 41.04 8.00e-81 291.00
IUUC-Mla-058904 Melampsora laricipopulina 45.37 9.00e-99 352.00
IUUC-Mvi-060525 Microbotryum violaceum 45.95 1.00e-99 354.00
IUUC-Mmr-060905 Microcebus murinus 40.18 6.00e-85 305.00
IUUC-Mmu-063428 Mus musculus 39.72 9.00e-84 301.00
IUUC-Mac-065276 Musa acuminata 41.57 1.00e-80 291.00
IUUC-Mpu-066062 Mustela putorius furo 39.86 3.00e-83 300.00
IUUC-Mlu-068115 Myotis lucifugus 50.45 2.00e-59 219.00
IUUC-Nfi-068512 Neosartorya fischeri 46.81 5.00e-105 372.00
IUUC-Ncr-068629 Neurospora crassa 48.18 3.00e-106 376.00
IUUC-Nle-070016 Nomascus leucogenys 40.19 2.00e-83 300.00
IUUC-Ont-072230 Oreochromis niloticus 41.75 5.00e-83 299.00
IUUC-Oan-072759 Ornithorhynchus anatinus 33.33 2.00e-58 217.00
IUUC-Ocu-074511 Oryctolagus cuniculus 40.57 6.00e-80 289.00
IUUC-Oba-075093 Oryza barthii 35.62 8.00e-70 255.00
IUUC-Obr-076130 Oryza brachyantha 37.16 4.00e-77 279.00
IUUC-Ogl-077397 Oryza glaberrima 37.67 7.00e-80 289.00
IUUC-Ogu-078111 Oryza glumaepatula 35.01 2.00e-65 243.00
IUUC-Oin-079162 Oryza indica 36.07 2.00e-72 264.00
IUUC-Olo-080909 Oryza longistaminata 29.28 2.00e-56 211.00
IUUC-Ome-081768 Oryza meridionalis 35.63 4.00e-69 253.00
IUUC-Oni-082453 Oryza nivara 35.96 4.00e-71 261.00
IUUC-Opu-084133 Oryza punctata 34.24 8.00e-61 226.00
IUUC-Oru-085056 Oryza rufipogon 33.15 4.00e-52 196.00
IUUC-Osa-085735 Oryza sativa 37.84 5.00e-80 289.00
IUUC-Ola-087066 Oryzias latipes 41.45 3.00e-80 290.00
IUUC-Olu-087594 Ostreococcus lucimarinus 38.00 1.00e-76 278.00
IUUC-Oga-087974 Otolemur garnettii 40.00 1.00e-84 304.00
IUUC-Oar-089902 Ovis aries 39.48 1.00e-82 298.00
IUUC-Ptr-090469 Pan troglodytes 39.43 2.00e-82 297.00
IUUC-Pan-092858 Papio anubis 39.49 2.00e-84 303.00
IUUC-Psi-094092 Pelodiscus sinensis 34.17 6.00e-44 169.00
IUUC-Pno-094919 Phaeosphaeria nodorum 44.47 2.00e-98 350.00
IUUC-Ppa-095849 Physcomitrella patens 38.96 5.00e-89 319.00
IUUC-Pfo-096535 Poecilia formosa 41.35 1.00e-81 295.00
IUUC-Pab-098478 Pongo abelii 38.65 2.00e-84 304.00
IUUC-Pop-098902 Populus trichocarpa 39.14 9.00e-81 291.00
IUUC-Pca-100403 Procavia capensis 45.52 2.00e-69 253.00
IUUC-Ppe-101997 Prunus persica 40.05 3.00e-83 300.00
IUUC-Pva-102423 Pteropus vampyrus 39.50 1.00e-83 301.00
IUUC-Pgr-103339 Puccinia graminis 43.93 5.00e-99 353.00
IUUC-Ptt-103937 Puccinia triticina 44.57 6.00e-99 352.00
IUUC-Pte-104051 Pyrenophora teres 45.97 2.00e-98 350.00
IUUC-Pyt-104644 Pyrenophora triticirepentis 46.45 2.00e-99 353.00
IUUC-Rno-106118 Rattus norvegicus 40.29 2.00e-81 294.00
IUUC-Sce-106330 Saccharomyces cerevisiae 40.68 3.00e-90 323.00
IUUC-Sha-106564 Sarcophilus harrisii 37.28 2.00e-63 233.00
IUUC-Sja-107969 Schizosaccharomyces japonicus 63.07 3.00e-176 608.00
IUUC-Ssl-108452 Sclerotinia sclerotiorum 48.31 2.00e-107 380.00
IUUC-Smo-109619 Selaginella moellendorffii 38.93 3.00e-78 283.00
IUUC-Sit-110719 Setaria italica 37.84 1.00e-78 285.00
IUUC-Sly-111245 Solanum lycopersicum 38.95 9.00e-76 275.00
IUUC-Stu-112645 Solanum tuberosum 39.68 1.00e-80 291.00
IUUC-Sar-113342 Sorex araneus 39.65 1.00e-74 271.00
IUUC-Sbi-114359 Sorghum bicolor 38.07 1.00e-78 285.00
IUUC-Sre-115098 Sporisorium reilianum 46.33 3.00e-97 347.00
IUUC-Ssc-115496 Sus scrofa 39.68 7.00e-84 302.00
IUUC-Tru-117662 Takifugu rubripes 41.37 2.00e-82 296.00
IUUC-Tni-120564 Tetraodon nigroviridis 40.06 2.00e-62 230.00
IUUC-Tca-121710 Theobroma cacao 38.71 1.00e-81 295.00
IUUC-Tre-122239 Trichoderma reesei 46.25 5.00e-104 369.00
IUUC-Tvi-122589 Trichoderma virens 46.45 9.00e-104 368.00
IUUC-Tae-124597 Triticum aestivum 38.67 1.00e-84 304.00
IUUC-Tur-126135 Triticum urartu 42.77 2.00e-70 258.00
IUUC-Tme-127073 Tuber melanosporum 46.62 4.00e-98 349.00
IUUC-Ttr-128383 Tursiops truncatus 38.65 1.00e-79 288.00
IUUC-Uma-129345 Ustilago maydis 46.77 3.00e-103 367.00
IUUC-Vda-129893 Verticillium dahliae 43.76 5.00e-101 359.00
IUUC-Vvi-131067 Vitis vinifera 40.36 1.00e-84 304.00
IUUC-Xtr-132603 Xenopus tropicalis 39.34 1.00e-83 301.00
IUUC-Xma-133149 Xiphophorus maculatus 40.71 8.00e-82 295.00
IUUC-Yli-134459 Yarrowia lipolytica 46.29 3.00e-100 356.00
IUUC-Zma-135655 Zea mays 39.91 1.00e-82 298.00
Created Date 25-Jun-2017

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