iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-23	82.0	239	270

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHt +v+ ++f ++ +ll++G++Dg+i++WD+
   Q: 239  GHTLGVSQVCFlPEsHLLLTGGNDGKIRLWDV 270
           8999********8889***************7 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAVKWTGGHS SSILCLNASK DGLVASGGEG GDLVAWGEDG TPVGHMQLEG ADDVTSIVFS 60
ASCPTKLYAS HGESISVLDV RSLKGCLDHF HVNEEEINCL SLNETESLLA SADDSGAIKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGGATTCT GATCTGTTCT CAAGTGCGTT TTTCTGTTTT TCCTCTAATG GCCTTGAGTC 60
GGCTTTCCTT GGCCTCTCTT CCTACGGAGT TTCCCGTTTC ATTTGCTTTC TGCTCATTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm

KEGG

rno:498097

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000124	Aegilops tauschii	24.75	4.00e-18	85.90
IUUC-Aml-001203	Ailuropoda melanoleuca	83.24	2.00e-171	595.00
IUUC-Atr-002680	Amborella trichopoda	25.29	2.00e-23	103.00
IUUC-Apl-003656	Anas platyrhynchos	57.98	2.00e-105	375.00
IUUC-Aca-004987	Anolis carolinensis	61.90	1.00e-123	436.00
IUUC-Aly-006254	Arabidopsis lyrata	32.12	7.00e-31	127.00
IUUC-Ath-006632	Arabidopsis thaliana	30.92	3.00e-29	122.00
IUUC-Ame-011032	Astyanax mexicanus	46.39	2.00e-89	322.00
IUUC-Bta-012588	Bos taurus	77.37	1.00e-154	538.00
IUUC-Bdi-014532	Brachypodium distachyon	25.76	7.00e-27	114.00
IUUC-Bol-015542	Brassica oleracea	29.18	2.00e-22	100.00
IUUC-Bra-017046	Brassica rapa	31.89	5.00e-30	126.00
IUUC-Cja-019365	Callithrix jacchus	83.52	1.00e-179	622.00
IUUC-Cfa-021090	Canis familiaris	83.80	1.00e-172	598.00
IUUC-Cpo-021517	Cavia porcellus	78.83	2.00e-170	591.00
IUUC-Csa-023041	Chlorocebus sabaeus	82.68	4.00e-171	593.00
IUUC-Cho-024801	Choloepus hoffmanni	80.45	1.00e-173	602.00
IUUC-Dre-028437	Danio rerio	46.79	2.00e-84	306.00
IUUC-Dno-029267	Dasypus novemcinctus	81.84	3.00e-176	610.00
IUUC-Ete-032726	Echinops telfairi	67.04	1.00e-140	492.00
IUUC-Eca-033621	Equus caballus	82.30	5.00e-163	566.00
IUUC-Eeu-034461	Erinaceus europaeus	74.30	2.00e-156	544.00
IUUC-Fca-036410	Felis catus	82.25	8.00e-168	582.00
IUUC-Fal-036676	Ficedula albicollis	64.53	8.00e-128	449.00
IUUC-Gmo-039597	Gadus morhua	32.65	7.00e-16	78.20
IUUC-Gga-040760	Gallus gallus	61.81	4.00e-69	253.00
IUUC-Gac-041905	Gasterosteus aculeatus	49.32	2.00e-90	326.00
IUUC-Gma-044017	Glycine max	32.04	2.00e-19	90.10
IUUC-Ggo-044881	Gorilla gorilla	81.84	6.00e-170	589.00
IUUC-Hsa-046836	Homo sapiens	82.12	1.00e-169	588.00
IUUC-Hvu-047651	Hordeum vulgare	25.19	1.00e-25	110.00
IUUC-Itr-048206	Ictidomys tridecemlineatus	83.19	6.00e-171	593.00
IUUC-Lch-050406	Latimeria chalumnae	52.45	3.00e-91	328.00
IUUC-Loc-052878	Lepisosteus oculatus	52.62	6.00e-96	343.00
IUUC-Laf-053547	Loxodonta africana	79.61	2.00e-169	588.00
IUUC-Mcc-054646	Macaca mulatta	82.12	7.00e-170	589.00
IUUC-Meu-056381	Macropus eugenii	71.79	5.00e-155	540.00
IUUC-Mtr-058656	Medicago truncatula	26.37	8.00e-20	91.30
IUUC-Mmr-061601	Microcebus murinus	81.51	6.00e-177	613.00
IUUC-Mdo-062305	Monodelphis domestica	71.79	5.00e-156	543.00
IUUC-Mmu-063213	Mus musculus	94.41	0.00e+00	660.00
IUUC-Mac-064940	Musa acuminata	24.38	6.00e-29	121.00
IUUC-Mpu-066629	Mustela putorius furo	81.84	1.00e-169	588.00
IUUC-Nle-069860	Nomascus leucogenys	82.12	2.00e-169	588.00
IUUC-Opr-071180	Ochotona princeps	78.37	9.00e-143	499.00
IUUC-Ont-071912	Oreochromis niloticus	47.83	1.00e-95	343.00
IUUC-Ocu-074874	Oryctolagus cuniculus	81.28	7.00e-178	616.00
IUUC-Obr-076835	Oryza brachyantha	32.70	1.00e-19	90.50
IUUC-Ogu-077977	Oryza glumaepatula	27.78	6.00e-13	68.60
IUUC-Oin-079206	Oryza indica	32.99	2.00e-22	99.80
IUUC-Olo-080621	Oryza longistaminata	28.57	1.00e-12	67.80
IUUC-Opu-083256	Oryza punctata	23.94	2.00e-15	76.30
IUUC-Osa-085892	Oryza sativa	32.99	2.00e-22	99.80
IUUC-Ola-086701	Oryzias latipes	46.21	3.00e-88	318.00
IUUC-Oga-088152	Otolemur garnettii	83.19	7.00e-178	616.00
IUUC-Oar-089681	Ovis aries	79.89	3.00e-162	564.00
IUUC-Ptr-091142	Pan troglodytes	82.40	2.00e-170	591.00
IUUC-Pan-092435	Papio anubis	82.12	4.00e-163	566.00
IUUC-Psi-093255	Pelodiscus sinensis	67.13	7.00e-142	496.00
IUUC-Ppa-095829	Physcomitrella patens	28.92	6.00e-30	124.00
IUUC-Pfo-097339	Poecilia formosa	45.60	1.00e-86	313.00
IUUC-Pab-098274	Pongo abelii	81.56	3.00e-165	574.00
IUUC-Pop-099705	Populus trichocarpa	25.88	3.00e-27	115.00
IUUC-Pca-100451	Procavia capensis	78.93	2.00e-171	594.00
IUUC-Ppe-101220	Prunus persica	26.52	2.00e-28	120.00
IUUC-Pva-102385	Pteropus vampyrus	81.56	2.00e-169	587.00
IUUC-Sha-106533	Sarcophilus harrisii	70.67	8.00e-155	539.00
IUUC-Smo-109248	Selaginella moellendorffii	26.05	1.00e-26	113.00
IUUC-Sit-110297	Setaria italica	24.52	1.00e-20	93.60
IUUC-Sly-111617	Solanum lycopersicum	32.20	9.00e-25	107.00
IUUC-Stu-112531	Solanum tuberosum	32.20	2.00e-24	106.00
IUUC-Sar-113647	Sorex araneus	79.05	3.00e-168	584.00
IUUC-Sbi-114621	Sorghum bicolor	26.45	4.00e-26	112.00
IUUC-Tgu-116482	Taeniopygia guttata	65.92	1.00e-124	439.00
IUUC-Tru-118622	Takifugu rubripes	48.36	7.00e-86	310.00
IUUC-Tsy-119474	Tarsius syrichta	78.49	8.00e-173	599.00
IUUC-Tni-120250	Tetraodon nigroviridis	45.97	1.00e-75	276.00
IUUC-Tca-121583	Theobroma cacao	28.22	4.00e-30	125.00
IUUC-Tae-125758	Triticum aestivum	26.95	4.00e-26	112.00
IUUC-Tbe-127545	Tupaia belangeri	81.23	7.00e-167	579.00
IUUC-Ttr-128497	Tursiops truncatus	80.45	6.00e-165	573.00
IUUC-Vpa-130772	Vicugna pacos	81.01	7.00e-167	579.00
IUUC-Vvi-131632	Vitis vinifera	26.62	5.00e-31	128.00
IUUC-Xma-133432	Xiphophorus maculatus	46.67	2.00e-89	322.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence