iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cne-027063

Ensembl Protein ID

AAW47063

UniProt Accession

P0CS54; Q55HS5; Q5K7B0; YTM1_CRYNJ

Genbank Protein ID

AAW47063.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

AE017356

Gene Name

YTM1; CNN00480

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CNN00480	AAW47063	AAW47063

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-24	81.0	305	340

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           gHt++v +l +   d + ++s+++Dg+++ W++ tg
   Q: 305  GHTGRVGGLVWdkLDsGKIWSAGWDGSVRGWEVETG 340
           8************5559***************9987 PP

Organism

Cryptococcus neoformans

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSIDPAGSQA SRQLPINLFT RSPTDAIPQS TYFIPSAWRR FQLSELINQV LGNTAENGSK 60
PVPFDFLVNG EVLRGSLEAW VKKNRGGDEE SQIDVEYVRS VMPPEEAARV EVEDWVSGLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGATGTCG ATCGACCCAG CTGGATCACA GGCATCTCGC CAACTCCCCA TCAACCTCTT 60
CACCAGGTCT CCAACAGATG CCATCCCCCA GTCTACCTAT TTTATTCCCT CCGCCTGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

cne:CNN00480

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	26.56	1.00e-29	122.00
IUUC-Aml-001997	Ailuropoda melanoleuca	25.69	3.00e-28	117.00
IUUC-Atr-002544	Amborella trichopoda	28.11	5.00e-31	126.00
IUUC-Apl-003981	Anas platyrhynchos	24.82	2.00e-23	101.00
IUUC-Aca-004370	Anolis carolinensis	25.26	2.00e-27	114.00
IUUC-Aly-006455	Arabidopsis lyrata	28.16	3.00e-32	130.00
IUUC-Ath-006669	Arabidopsis thaliana	28.63	8.00e-30	122.00
IUUC-Ago-007864	Ashbya gossypii	25.36	4.00e-29	120.00
IUUC-Acl-008177	Aspergillus clavatus	26.33	2.00e-34	137.00
IUUC-Afl-008617	Aspergillus flavus	26.51	3.00e-35	140.00
IUUC-Afu-008752	Aspergillus fumigatus	25.84	2.00e-31	127.00
IUUC-Ani-009136	Aspergillus nidulans	27.64	9.00e-38	149.00
IUUC-Ang-009701	Aspergillus niger	26.60	8.00e-32	129.00
IUUC-Aor-009884	Aspergillus oryzae	26.71	2.00e-36	144.00
IUUC-Ate-010472	Aspergillus terreus	29.85	4.00e-13	67.00
IUUC-Ame-011432	Astyanax mexicanus	24.68	1.00e-27	115.00
IUUC-Bgr-012218	Blumeria graminis	26.82	7.00e-29	119.00
IUUC-Bta-012829	Bos taurus	25.79	8.00e-30	122.00
IUUC-Bci-013953	Botrytis cinerea	26.39	2.00e-30	125.00
IUUC-Bdi-014351	Brachypodium distachyon	27.29	2.00e-31	128.00
IUUC-Bol-016190	Brassica oleracea	28.60	6.00e-30	122.00
IUUC-Bra-016988	Brassica rapa	28.78	2.00e-30	124.00
IUUC-Cel-018569	Caenorhabditis elegans	19.33	2.00e-11	61.60
IUUC-Cja-019468	Callithrix jacchus	25.37	6.00e-29	119.00
IUUC-Cfa-020471	Canis familiaris	25.37	2.00e-26	111.00
IUUC-Cpo-022260	Cavia porcellus	26.00	2.00e-30	124.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	28.10	1.00e-27	115.00
IUUC-Csa-023989	Chlorocebus sabaeus	25.79	2.00e-29	121.00
IUUC-Cho-024426	Choloepus hoffmanni	29.17	1.00e-20	92.00
IUUC-Cin-025789	Ciona intestinalis	24.04	5.00e-30	123.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	32.03	3.00e-07	46.20
IUUC-Dre-027907	Danio rerio	25.21	3.00e-28	117.00
IUUC-Dno-029225	Dasypus novemcinctus	25.31	3.00e-28	117.00
IUUC-Dse-031308	Dothistroma septosporum	25.92	3.00e-29	120.00
IUUC-Dme-032189	Drosophila melanogaster	23.38	3.00e-23	100.00
IUUC-Ete-032247	Echinops telfairi	24.31	1.00e-21	95.50
IUUC-Eca-034285	Equus caballus	25.37	4.00e-29	120.00
IUUC-Eeu-035322	Erinaceus europaeus	28.84	2.00e-22	98.20
IUUC-Fca-036114	Felis catus	25.16	6.00e-28	116.00
IUUC-Fox-037965	Fusarium oxysporum	26.61	2.00e-26	111.00
IUUC-Fso-038244	Fusarium solani	26.35	6.00e-24	103.00
IUUC-Gmo-039040	Gadus morhua	25.26	3.00e-28	117.00
IUUC-Ggr-040093	Gaeumannomyces graminis	26.64	2.00e-17	82.00
IUUC-Gga-040610	Gallus gallus	25.52	6.00e-28	116.00
IUUC-Gac-042117	Gasterosteus aculeatus	25.68	3.00e-30	124.00
IUUC-Gma-043756	Glycine max	29.40	6.00e-33	133.00
IUUC-Ggo-045179	Gorilla gorilla	25.79	4.00e-31	127.00
IUUC-Hsa-046114	Homo sapiens	25.58	6.00e-30	123.00
IUUC-Hvu-047331	Hordeum vulgare	26.06	5.00e-25	106.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.16	1.00e-28	118.00
IUUC-Kpa-049304	Komagataella pastoris	25.96	2.00e-39	154.00
IUUC-Lch-050655	Latimeria chalumnae	23.99	2.00e-16	78.20
IUUC-Lpe-051675	Leersia perrieri	27.69	5.00e-31	127.00
IUUC-Loc-052868	Lepisosteus oculatus	23.11	6.00e-26	109.00
IUUC-Lma-053258	Leptosphaeria maculans	26.20	3.00e-32	132.00
IUUC-Laf-053993	Loxodonta africana	25.58	7.00e-29	119.00
IUUC-Mcc-054895	Macaca mulatta	28.81	2.00e-14	70.90
IUUC-Meu-056501	Macropus eugenii	29.60	8.00e-19	85.90
IUUC-Mor-057114	Magnaporthe oryzae	25.56	2.00e-27	114.00
IUUC-Mpo-057463	Magnaporthe poae	33.90	2.00e-14	70.10
IUUC-Mtr-058367	Medicago truncatula	28.48	9.00e-33	132.00
IUUC-Mla-059107	Melampsora laricipopulina	32.79	1.00e-56	211.00
IUUC-Mga-059745	Meleagris gallopavo	25.27	8.00e-26	109.00
IUUC-Mvi-060362	Microbotryum violaceum	33.27	2.00e-59	221.00
IUUC-Mdo-062257	Monodelphis domestica	26.10	8.00e-30	122.00
IUUC-Mmu-063546	Mus musculus	24.95	2.00e-28	117.00
IUUC-Mac-065540	Musa acuminata	27.10	6.00e-31	126.00
IUUC-Mpu-066284	Mustela putorius furo	25.62	1.00e-29	122.00
IUUC-Mlu-067241	Myotis lucifugus	25.58	5.00e-29	120.00
IUUC-Nfi-068260	Neosartorya fischeri	26.18	3.00e-31	127.00
IUUC-Ncr-068719	Neurospora crassa	26.84	4.00e-28	117.00
IUUC-Nle-068981	Nomascus leucogenys	25.37	1.00e-28	119.00
IUUC-Opr-071218	Ochotona princeps	25.29	5.00e-25	106.00
IUUC-Ont-071646	Oreochromis niloticus	25.32	1.00e-26	112.00
IUUC-Oan-073453	Ornithorhynchus anatinus	24.69	2.00e-30	124.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.79	3.00e-30	124.00
IUUC-Oba-075712	Oryza barthii	24.63	3.00e-24	103.00
IUUC-Obr-076721	Oryza brachyantha	26.23	1.00e-31	129.00
IUUC-Ogl-077229	Oryza glaberrima	26.97	1.00e-30	125.00
IUUC-Ogu-078977	Oryza glumaepatula	24.84	2.00e-24	105.00
IUUC-Oin-079683	Oryza indica	27.33	2.00e-32	130.00
IUUC-Olo-080291	Oryza longistaminata	26.51	5.00e-15	73.20
IUUC-Ome-081834	Oryza meridionalis	26.78	2.00e-30	125.00
IUUC-Oni-082507	Oryza nivara	26.19	4.00e-29	120.00
IUUC-Opu-083396	Oryza punctata	26.50	3.00e-32	130.00
IUUC-Oru-085220	Oryza rufipogon	26.19	9.00e-29	119.00
IUUC-Osa-085767	Oryza sativa	27.33	2.00e-32	130.00
IUUC-Ola-087420	Oryzias latipes	26.54	3.00e-30	124.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.05	2.00e-25	108.00
IUUC-Oga-088264	Otolemur garnettii	25.58	9.00e-30	122.00
IUUC-Oar-089335	Ovis aries	25.58	1.00e-28	119.00
IUUC-Ptr-091320	Pan troglodytes	25.58	6.00e-30	123.00
IUUC-Pan-092833	Papio anubis	26.00	3.00e-29	120.00
IUUC-Psi-093504	Pelodiscus sinensis	25.88	6.00e-26	109.00
IUUC-Pma-094189	Petromyzon marinus	25.97	7.00e-23	99.80
IUUC-Pno-094929	Phaeosphaeria nodorum	26.65	8.00e-29	119.00
IUUC-Ppa-095429	Physcomitrella patens	28.75	4.00e-38	150.00
IUUC-Pfo-096337	Poecilia formosa	25.37	8.00e-29	119.00
IUUC-Pab-097571	Pongo abelii	25.79	4.00e-30	123.00
IUUC-Pop-099977	Populus trichocarpa	25.42	1.00e-27	115.00
IUUC-Pca-100394	Procavia capensis	23.92	1.00e-19	88.60
IUUC-Ppe-101848	Prunus persica	27.40	3.00e-33	134.00
IUUC-Pgr-103637	Puccinia graminis	30.14	4.00e-57	213.00
IUUC-Ptt-103781	Puccinia triticina	30.02	6.00e-59	219.00
IUUC-Pte-104135	Pyrenophora teres	27.60	3.00e-32	132.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	27.33	4.00e-31	127.00
IUUC-Rno-105114	Rattus norvegicus	25.52	5.00e-29	120.00
IUUC-Sce-106401	Saccharomyces cerevisiae	24.90	3.00e-33	134.00
IUUC-Sha-107122	Sarcophilus harrisii	25.68	2.00e-27	114.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	27.69	2.00e-34	138.00
IUUC-Spo-108134	Schizosaccharomyces pombe	35.43	3.00e-19	87.80
IUUC-Ssl-108398	Sclerotinia sclerotiorum	26.53	3.00e-32	130.00
IUUC-Smo-108720	Selaginella moellendorffii	27.25	2.00e-31	128.00
IUUC-Sit-110354	Setaria italica	28.11	2.00e-32	131.00
IUUC-Sly-111178	Solanum lycopersicum	28.44	2.00e-35	140.00
IUUC-Stu-112778	Solanum tuberosum	26.73	1.00e-34	139.00
IUUC-Sar-113596	Sorex araneus	27.05	1.00e-19	89.00
IUUC-Sbi-114193	Sorghum bicolor	27.46	5.00e-30	123.00
IUUC-Sre-115002	Sporisorium reilianum	26.39	2.00e-34	138.00
IUUC-Ssc-116066	Sus scrofa	25.58	2.00e-28	118.00
IUUC-Tgu-117048	Taeniopygia guttata	24.82	3.00e-22	97.40
IUUC-Tni-119820	Tetraodon nigroviridis	25.74	1.00e-26	112.00
IUUC-Tca-121605	Theobroma cacao	27.85	1.00e-33	135.00
IUUC-Tre-121947	Trichoderma reesei	25.74	3.00e-26	111.00
IUUC-Tvi-122481	Trichoderma virens	26.04	6.00e-26	110.00
IUUC-Tae-123847	Triticum aestivum	26.56	1.00e-29	122.00
IUUC-Tur-126586	Triticum urartu	26.46	1.00e-25	108.00
IUUC-Tme-126900	Tuber melanosporum	25.84	1.00e-32	132.00
IUUC-Tbe-127736	Tupaia belangeri	26.97	1.00e-13	68.60
IUUC-Ttr-129041	Tursiops truncatus	30.10	2.00e-16	78.60
IUUC-Uma-129628	Ustilago maydis	27.26	1.00e-28	119.00
IUUC-Vpa-130260	Vicugna pacos	25.58	3.00e-30	124.00
IUUC-Vvi-131009	Vitis vinifera	28.11	2.00e-36	144.00
IUUC-Xtr-132083	Xenopus tropicalis	25.37	1.00e-27	115.00
IUUC-Xma-133094	Xiphophorus maculatus	25.53	2.00e-30	124.00
IUUC-Yli-134531	Yarrowia lipolytica	28.77	6.00e-12	63.50
IUUC-Zma-135509	Zea mays	28.04	2.00e-32	131.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence