iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114305

Ensembl Protein ID

Sb03g011100.1

UniProt Accession

C5XH90; C5XH90_SORBI

Genbank Protein ID

EES02765.1

Protein Name

Presenilin

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G130500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g011100	Sb03g011100.1	Sb03g011100.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/CUE	33.64	1.00e-30	131.00	IUUC-Cel-018553
UBD/Alpha-Helix/CUE	36.28	3.00e-26	117.00	IUUC-Hsa-046822

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorghum bicolor

Functional Description
(View)

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors.

Protein Sequence
(Fasta)

MDPAAASPVP ALAPAVEEPI SAISVLDTLG AEVLAVMSPV SICMALVVLL ISLLSPPSSG 60
SAAASPPPVT AATLVYLESP NDSPGQKFLG ALLDAAVFVV LVAAVTFVLV ALYYYRCTGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATCCCG CCGCCGCCTC GCCGGTGCCG GCTCTGGCGC CTGCCGTGGA GGAGCCCATC 60
AGCGCCATCT CCGTTCTCGA CACCCTCGGC GCGGAGGTGC TGGCGGTTAT GTCCCCGGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0333--Golgi apparatus
KW-0378--Hydrolase
KW-0472--Membrane
KW-0914--Notch signaling pathway
KW-0645--Protease
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001108--Peptidase_A22A
IPR006639--Preselin/SPP

Pfam

PF01080--Presenilin

PRINTS

PR01072--PRESENILIN

SMART

SM00730--PSN

Gene Ontology

GO:0005789--C:endoplasmic reticulum membrane
GO:0000139--C:Golgi membrane
GO:0005798--C:Golgi-associated vesicle
GO:0005887--C:integral component of plasma membrane
GO:0005634--C:nucleus
GO:0004190--F:aspartic-type endopeptidase activity
GO:0004175--F:endopeptidase activity
GO:0007219--P:Notch signaling pathway
GO:0016485--P:protein processing

KEGG

sbi:SORBI_03g011100

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000686	Aegilops tauschii	74.05	7.00e-128	450.00
IUUC-Aml-001648	Ailuropoda melanoleuca	32.49	7.00e-33	133.00
IUUC-Atr-003039	Amborella trichopoda	50.84	1.00e-105	375.00
IUUC-Apl-003727	Anas platyrhynchos	31.01	3.00e-31	128.00
IUUC-Aca-004582	Anolis carolinensis	32.43	4.00e-33	134.00
IUUC-Aly-005455	Arabidopsis lyrata	57.64	3.00e-58	218.00
IUUC-Ath-006730	Arabidopsis thaliana	49.79	5.00e-101	360.00
IUUC-Ate-010509	Aspergillus terreus	43.75	2.50e+00	26.90
IUUC-Ame-010686	Astyanax mexicanus	34.91	9.00e-28	116.00
IUUC-Bta-013026	Bos taurus	31.08	8.00e-32	130.00
IUUC-Bdi-014196	Brachypodium distachyon	80.26	2.00e-159	554.00
IUUC-Bol-015841	Brassica oleracea	50.64	8.00e-97	346.00
IUUC-Bra-017580	Brassica rapa	57.21	4.00e-44	171.00
IUUC-Cel-018553	Caenorhabditis elegans	34.64	3.00e-40	158.00
IUUC-Cja-019994	Callithrix jacchus	33.11	1.00e-34	140.00
IUUC-Cfa-020074	Canis familiaris	31.39	8.00e-34	137.00
IUUC-Cpo-022237	Cavia porcellus	31.84	3.00e-34	138.00
IUUC-Cre-022747	Chlamydomonas reinhardtii	42.80	2.00e-42	166.00
IUUC-Csa-023537	Chlorocebus sabaeus	33.33	4.00e-35	141.00
IUUC-Cho-024735	Choloepus hoffmanni	41.12	3.00e-19	89.00
IUUC-Cin-025780	Ciona intestinalis	34.64	6.00e-23	100.00
IUUC-Csv-025967	Ciona savignyi	33.52	2.00e-22	99.00
IUUC-Dre-028526	Danio rerio	33.25	2.00e-36	145.00
IUUC-Dno-029758	Dasypus novemcinctus	31.39	5.00e-33	134.00
IUUC-Dor-030609	Dipodomys ordii	35.75	1.00e-20	93.60
IUUC-Dme-031929	Drosophila melanogaster	34.51	1.00e-27	116.00
IUUC-Ete-032487	Echinops telfairi	41.98	6.00e-13	67.80
IUUC-Eca-033391	Equus caballus	26.67	9.00e-21	93.60
IUUC-Eeu-035134	Erinaceus europaeus	32.06	5.00e-29	120.00
IUUC-Fca-036243	Felis catus	31.17	7.00e-33	134.00
IUUC-Fal-036600	Ficedula albicollis	30.86	5.00e-34	137.00
IUUC-Gmo-039665	Gadus morhua	34.12	1.00e-21	96.70
IUUC-Gga-040993	Gallus gallus	32.21	4.00e-35	141.00
IUUC-Gac-042511	Gasterosteus aculeatus	33.88	1.00e-22	99.80
IUUC-Gma-043822	Glycine max	62.61	6.00e-43	167.00
IUUC-Ggo-045338	Gorilla gorilla	32.67	6.00e-29	121.00
IUUC-Hsa-046822	Homo sapiens	33.33	4.00e-35	141.00
IUUC-Hvu-047141	Hordeum vulgare	75.41	1.00e-137	481.00
IUUC-Itr-048420	Ictidomys tridecemlineatus	33.06	2.00e-35	141.00
IUUC-Lch-049946	Latimeria chalumnae	31.96	4.00e-21	95.10
IUUC-Lpe-051132	Leersia perrieri	81.96	7.00e-159	552.00
IUUC-Loc-052469	Lepisosteus oculatus	30.07	9.00e-26	110.00
IUUC-Laf-053979	Loxodonta africana	31.61	4.00e-30	124.00
IUUC-Mcc-055682	Macaca mulatta	33.33	4.00e-35	141.00
IUUC-Meu-056004	Macropus eugenii	31.05	8.00e-20	90.90
IUUC-Mtr-058392	Medicago truncatula	52.59	3.00e-98	350.00
IUUC-Mga-059466	Meleagris gallopavo	31.53	1.00e-34	139.00
IUUC-Mmr-060890	Microcebus murinus	32.27	1.00e-28	119.00
IUUC-Mdo-062122	Monodelphis domestica	31.17	8.00e-32	130.00
IUUC-Mmu-063823	Mus musculus	31.87	2.00e-27	115.00
IUUC-Mac-064858	Musa acuminata	72.93	1.00e-46	179.00
IUUC-Mpu-065927	Mustela putorius furo	31.39	1.00e-33	136.00
IUUC-Mlu-067079	Myotis lucifugus	31.39	1.00e-36	146.00
IUUC-Nle-070180	Nomascus leucogenys	33.33	4.00e-35	141.00
IUUC-Opr-070344	Ochotona princeps	31.47	6.00e-26	110.00
IUUC-Ont-071846	Oreochromis niloticus	32.67	1.00e-32	133.00
IUUC-Oan-072783	Ornithorhynchus anatinus	32.93	3.00e-28	118.00
IUUC-Ocu-074527	Oryctolagus cuniculus	32.29	8.00e-35	140.00
IUUC-Oba-075256	Oryza barthii	81.44	6.00e-135	472.00
IUUC-Obr-076302	Oryza brachyantha	82.61	2.00e-158	551.00
IUUC-Ogl-077097	Oryza glaberrima	79.70	9.00e-152	529.00
IUUC-Ogu-078570	Oryza glumaepatula	81.86	8.00e-146	509.00
IUUC-Oin-079244	Oryza indica	79.27	6.00e-151	526.00
IUUC-Olo-080484	Oryza longistaminata	80.20	6.00e-105	372.00
IUUC-Ome-081814	Oryza meridionalis	81.25	1.00e-155	541.00
IUUC-Oni-082057	Oryza nivara	81.62	1.00e-145	508.00
IUUC-Opu-084176	Oryza punctata	81.08	1.00e-147	514.00
IUUC-Oru-084618	Oryza rufipogon	81.86	4.00e-146	510.00
IUUC-Osa-085602	Oryza sativa	81.75	3.00e-147	513.00
IUUC-Ola-086707	Oryzias latipes	33.70	5.00e-26	110.00
IUUC-Olu-087811	Ostreococcus lucimarinus	43.89	1.00e-38	152.00
IUUC-Oga-088560	Otolemur garnettii	32.39	1.00e-28	119.00
IUUC-Oar-090348	Ovis aries	30.94	4.00e-35	141.00
IUUC-Ptr-091060	Pan troglodytes	33.33	4.00e-35	141.00
IUUC-Pan-091742	Papio anubis	32.67	5.00e-29	121.00
IUUC-Psi-093505	Pelodiscus sinensis	30.86	1.00e-32	133.00
IUUC-Pma-094612	Petromyzon marinus	36.23	3.00e-22	99.00
IUUC-Ppa-095431	Physcomitrella patens	43.70	2.00e-88	318.00
IUUC-Pfo-097396	Poecilia formosa	29.70	2.00e-33	135.00
IUUC-Pab-098591	Pongo abelii	33.33	3.00e-35	141.00
IUUC-Pop-099661	Populus trichocarpa	46.62	1.00e-80	292.00
IUUC-Pca-101029	Procavia capensis	31.63	3.00e-29	121.00
IUUC-Ppe-101495	Prunus persica	56.51	6.00e-111	393.00
IUUC-Pva-102934	Pteropus vampyrus	30.28	9.00e-26	110.00
IUUC-Rno-105861	Rattus norvegicus	33.03	8.00e-22	97.40
IUUC-Sha-107045	Sarcophilus harrisii	30.94	7.00e-33	134.00
IUUC-Smo-109325	Selaginella moellendorffii	48.25	2.00e-38	152.00
IUUC-Sit-110624	Setaria italica	92.83	8.00e-176	608.00
IUUC-Sly-110865	Solanum lycopersicum	87.14	2.00e-32	129.00
IUUC-Stu-112433	Solanum tuberosum	52.89	4.00e-96	343.00
IUUC-Sar-113169	Sorex araneus	41.82	8.00e-20	90.50
IUUC-Ssc-115766	Sus scrofa	31.32	3.00e-33	135.00
IUUC-Tgu-116469	Taeniopygia guttata	31.68	8.00e-33	133.00
IUUC-Tru-117732	Takifugu rubripes	31.87	1.00e-32	133.00
IUUC-Tsy-119624	Tarsius syrichta	31.96	2.00e-20	92.80
IUUC-Tni-119852	Tetraodon nigroviridis	30.94	2.00e-18	86.30
IUUC-Tca-121865	Theobroma cacao	55.00	9.00e-102	362.00
IUUC-Tae-125925	Triticum aestivum	75.36	1.00e-139	488.00
IUUC-Tur-126237	Triticum urartu	75.47	2.00e-121	427.00
IUUC-Tbe-127632	Tupaia belangeri	32.79	1.00e-28	119.00
IUUC-Ttr-128793	Tursiops truncatus	32.33	3.00e-31	128.00
IUUC-Vpa-130625	Vicugna pacos	40.74	6.00e-19	87.80
IUUC-Vvi-131312	Vitis vinifera	54.45	4.00e-100	357.00
IUUC-Xtr-132756	Xenopus tropicalis	31.39	3.00e-35	142.00
IUUC-Xma-133377	Xiphophorus maculatus	32.40	5.00e-19	88.20

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence