iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099185

Ensembl Protein ID

POPTR_0010s15260.1

UniProt Accession

U5FYX2; U5FYX2_POPTR

Genbank Protein ID

ERP56330.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_659065; POPTR_0010s15260g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s15260	POPTR_0010s15260.1	POPTR_0010s15260.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.80e-24	84.5	269	305

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH++++t+la  s+ tl++s+s+D+ i+vW+l +g +
   Q: 269  GHEGDITDLAVnSNnTLVASSSNDCIIRVWRLPDGMP 305
           8**********9555*****************99865 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MMPLSFSSKE REIAQLAESE TSRRRVKDVD VDLSEVYFLI MHFLSAGPCQ RTYVQFWNEL 60
LEHQLLPRRY HAWYSRSGAH SGDENDENDN GLSFPLSYNS LEEQYPHIEK NHLVKLLKQL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAACATTGC TCTCCAGAAG TACATTCCTT CAAGGGATGC ACCTTCAGGC AGTATGATGC 60
CTTTGAGCTT TTCCAGTAAG GAGCGTGAGA TTGCTCAACT TGCAGAGTCA GAGACAAGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50014--BROMODOMAIN_2
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00439--Bromodomain
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

pop:POPTR_0010s15260g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001113	Aegilops tauschii	52.93	0.00e+00	927.00
IUUC-Atr-002600	Amborella trichopoda	63.68	0.00e+00	1174.00
IUUC-Apl-003700	Anas platyrhynchos	35.81	3.00e-66	247.00
IUUC-Aca-004474	Anolis carolinensis	33.59	5.00e-79	290.00
IUUC-Aly-006406	Arabidopsis lyrata	57.85	0.00e+00	1605.00
IUUC-Ath-006801	Arabidopsis thaliana	57.76	0.00e+00	1598.00
IUUC-Ame-010718	Astyanax mexicanus	31.15	2.00e-74	275.00
IUUC-Bta-013125	Bos taurus	36.23	8.00e-71	262.00
IUUC-Bol-015737	Brassica oleracea	56.92	0.00e+00	1586.00
IUUC-Bra-017961	Brassica rapa	56.93	0.00e+00	1592.00
IUUC-Cja-018868	Callithrix jacchus	33.18	3.00e-78	287.00
IUUC-Cfa-021179	Canis familiaris	32.43	1.00e-73	271.00
IUUC-Cpo-022077	Cavia porcellus	36.23	3.00e-71	263.00
IUUC-Csa-023618	Chlorocebus sabaeus	33.18	2.00e-78	288.00
IUUC-Cho-024690	Choloepus hoffmanni	30.74	2.00e-35	145.00
IUUC-Cin-025702	Ciona intestinalis	36.22	2.00e-30	125.00
IUUC-Dor-031052	Dipodomys ordii	29.55	3.00e-44	174.00
IUUC-Dme-031752	Drosophila melanogaster	29.50	2.00e-67	251.00
IUUC-Ete-032650	Echinops telfairi	37.21	3.00e-34	141.00
IUUC-Eca-034274	Equus caballus	36.02	1.00e-70	261.00
IUUC-Fca-035451	Felis catus	36.23	9.00e-71	262.00
IUUC-Gmo-039116	Gadus morhua	28.46	2.00e-24	108.00
IUUC-Gga-040798	Gallus gallus	32.73	3.00e-73	270.00
IUUC-Gac-042435	Gasterosteus aculeatus	30.69	9.00e-61	229.00
IUUC-Gma-043340	Glycine max	60.44	0.00e+00	1880.00
IUUC-Hsa-046757	Homo sapiens	33.18	3.00e-78	287.00
IUUC-Itr-047962	Ictidomys tridecemlineatus	27.13	5.00e-24	105.00
IUUC-Lch-050646	Latimeria chalumnae	33.38	1.00e-76	281.00
IUUC-Lpe-051619	Leersia perrieri	59.47	0.00e+00	1041.00
IUUC-Laf-054140	Loxodonta africana	36.23	6.00e-71	263.00
IUUC-Mtr-058094	Medicago truncatula	59.67	0.00e+00	1795.00
IUUC-Mmr-060837	Microcebus murinus	32.28	7.00e-72	266.00
IUUC-Mdo-061903	Monodelphis domestica	33.49	2.00e-78	287.00
IUUC-Mmu-063772	Mus musculus	33.03	4.00e-78	286.00
IUUC-Mac-065343	Musa acuminata	53.60	0.00e+00	1618.00
IUUC-Mpu-066359	Mustela putorius furo	36.34	1.00e-69	258.00
IUUC-Opr-070971	Ochotona princeps	29.04	2.00e-42	167.00
IUUC-Ocu-074033	Oryctolagus cuniculus	36.23	2.00e-70	261.00
IUUC-Oba-075709	Oryza barthii	50.17	0.00e+00	1386.00
IUUC-Obr-076619	Oryza brachyantha	50.43	0.00e+00	1411.00
IUUC-Ogl-077493	Oryza glaberrima	48.20	0.00e+00	1155.00
IUUC-Ogu-078641	Oryza glumaepatula	47.56	0.00e+00	1025.00
IUUC-Oin-079669	Oryza indica	70.56	0.00e+00	717.00
IUUC-Olo-080755	Oryza longistaminata	48.85	0.00e+00	1151.00
IUUC-Oni-082991	Oryza nivara	47.71	0.00e+00	1131.00
IUUC-Opu-083233	Oryza punctata	50.61	0.00e+00	1402.00
IUUC-Oru-085195	Oryza rufipogon	50.29	0.00e+00	1379.00
IUUC-Oga-088578	Otolemur garnettii	36.44	3.00e-71	264.00
IUUC-Oar-090247	Ovis aries	36.23	9.00e-71	262.00
IUUC-Pan-092734	Papio anubis	33.18	2.00e-78	288.00
IUUC-Ppa-095793	Physcomitrella patens	52.24	0.00e+00	839.00
IUUC-Pab-098402	Pongo abelii	33.18	3.00e-78	287.00
IUUC-Ppe-101849	Prunus persica	63.13	0.00e+00	1998.00
IUUC-Sha-107496	Sarcophilus harrisii	33.01	9.00e-71	262.00
IUUC-Sit-110017	Setaria italica	49.27	0.00e+00	800.00
IUUC-Tru-117824	Takifugu rubripes	32.93	8.00e-75	275.00
IUUC-Tsy-119003	Tarsius syrichta	32.48	2.00e-62	234.00
IUUC-Tca-121098	Theobroma cacao	65.81	0.00e+00	2019.00
IUUC-Tae-125478	Triticum aestivum	57.18	0.00e+00	1056.00
IUUC-Tur-126809	Triticum urartu	56.34	0.00e+00	1040.00
IUUC-Vvi-131362	Vitis vinifera	67.43	0.00e+00	2082.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence