iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cpo-021440

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAKN02050012

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCPOG00000010747.3	ENSCPOT00000010845.2	ENSCPOP00000009648.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-36	123.3	411	449
UBD/Beta-Prp	4.60e-60	203.3	236	483

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++++f ++  ++++G +D+t+kvWDlr+ +++ 
   Q: 411  GHLKEIYGISFsPNgYHIAAGRGDNTCKVWDLRQRRCIY 449
           7999********77799****************999975 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +i+  +fsp++++lat++++g  k+w+v + +ll++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 236  DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTvsldqkdvNLASCAADGSVKLWSLDSDEPVAD 324
           67899999********************************************99988888888999*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  dr  r+wdle ++++   ++gh+  v  +++h+dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 325  IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL-HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 411
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
           h + +y +sf++ng ++++g  d+t k+wdl++ +c++t  +h++ v+ v+f   ++++l++g+ D++ +iW
   Q: 412  HLKEIYGISFSPNGYHIAAGRGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEpIHGNFLLTGAYDNTAKIW 483
           *****************************************************88***************** PP

Organism

Cavia porcellus

Protein Sequence
(Fasta)

GFLRGFPAPE PGMASSRASS TATKTKAPDD LVAPVVKKPH IYYGSLEEKE RERLAKGESG 60
ILGKEGLKAG IEAGNINITS VGEVFEIEEH ISERQAEVLA EFERRKRARQ INVSTDDSEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCTTTCTCA GAGGTTTCCC GGCTCCGGAG CCCGGCATGG CTTCTTCGCG AGCCTCTTCC 60
ACGGTACAGA GCTCGGGATC TCAGCTCATT CTGGCGGGGA GCGCAGAGAG GGTGGGGTGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0015030--C:Cajal body
GO:0016607--C:nuclear speck
GO:0071001--C:U4/U6 snRNP

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	44.63	4.00e-101	361.00
IUUC-Aml-001737	Ailuropoda melanoleuca	96.63	0.00e+00	1011.00
IUUC-Atr-002828	Amborella trichopoda	43.76	9.00e-105	373.00
IUUC-Apl-003723	Anas platyrhynchos	87.45	0.00e+00	944.00
IUUC-Aca-004972	Anolis carolinensis	86.81	0.00e+00	892.00
IUUC-Aly-006531	Arabidopsis lyrata	43.15	3.00e-95	342.00
IUUC-Ath-007367	Arabidopsis thaliana	43.58	9.00e-110	390.00
IUUC-Ago-007893	Ashbya gossypii	32.75	4.00e-56	212.00
IUUC-Acl-008236	Aspergillus clavatus	38.67	3.00e-90	325.00
IUUC-Afl-008522	Aspergillus flavus	39.17	1.00e-98	353.00
IUUC-Afu-008904	Aspergillus fumigatus	38.48	6.00e-95	341.00
IUUC-Ani-009198	Aspergillus nidulans	39.17	7.00e-98	350.00
IUUC-Ang-009662	Aspergillus niger	39.75	3.00e-99	355.00
IUUC-Aor-009881	Aspergillus oryzae	40.00	2.00e-98	352.00
IUUC-Ate-010333	Aspergillus terreus	38.22	5.00e-88	318.00
IUUC-Ame-011697	Astyanax mexicanus	78.46	0.00e+00	809.00
IUUC-Bgr-012254	Blumeria graminis	38.76	4.00e-99	355.00
IUUC-Bta-012615	Bos taurus	96.93	0.00e+00	984.00
IUUC-Bci-013720	Botrytis cinerea	38.20	1.00e-97	350.00
IUUC-Bdi-014302	Brachypodium distachyon	44.98	3.00e-108	385.00
IUUC-Bol-015594	Brassica oleracea	43.67	5.00e-101	362.00
IUUC-Bra-017465	Brassica rapa	43.45	3.00e-101	362.00
IUUC-Cel-018632	Caenorhabditis elegans	45.45	9.00e-108	384.00
IUUC-Cja-019747	Callithrix jacchus	97.71	0.00e+00	1025.00
IUUC-Cfa-020288	Canis familiaris	96.63	0.00e+00	1013.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	46.91	1.00e-84	306.00
IUUC-Csa-023139	Chlorocebus sabaeus	98.80	0.00e+00	701.00
IUUC-Cho-024481	Choloepus hoffmanni	94.03	0.00e+00	857.00
IUUC-Cin-025106	Ciona intestinalis	58.50	3.00e-176	611.00
IUUC-Csv-026087	Ciona savignyi	56.94	5.00e-175	607.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	37.93	2.00e-92	333.00
IUUC-Cne-026793	Cryptococcus neoformans	41.08	9.00e-104	370.00
IUUC-Dre-028723	Danio rerio	77.08	0.00e+00	786.00
IUUC-Dno-029299	Dasypus novemcinctus	97.24	0.00e+00	998.00
IUUC-Dor-030345	Dipodomys ordii	95.65	1.00e-67	250.00
IUUC-Dse-031562	Dothistroma septosporum	36.13	1.00e-90	326.00
IUUC-Dme-031783	Drosophila melanogaster	55.97	3.00e-139	488.00
IUUC-Ete-032669	Echinops telfairi	95.61	0.00e+00	1004.00
IUUC-Eca-033566	Equus caballus	97.19	0.00e+00	998.00
IUUC-Eeu-034524	Erinaceus europaeus	98.33	5.00e-146	510.00
IUUC-Fca-036215	Felis catus	97.83	0.00e+00	1001.00
IUUC-Fal-037018	Ficedula albicollis	88.60	0.00e+00	786.00
IUUC-Fox-037936	Fusarium oxysporum	37.08	1.00e-85	310.00
IUUC-Fso-038366	Fusarium solani	37.45	4.00e-90	325.00
IUUC-Gmo-038966	Gadus morhua	66.67	7.00e-140	489.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.83	9.00e-85	307.00
IUUC-Gga-040797	Gallus gallus	89.84	0.00e+00	928.00
IUUC-Gac-042598	Gasterosteus aculeatus	67.66	0.00e+00	653.00
IUUC-Gma-044220	Glycine max	45.06	4.00e-104	372.00
IUUC-Ggo-044682	Gorilla gorilla	97.63	0.00e+00	1000.00
IUUC-Hsa-045804	Homo sapiens	97.32	0.00e+00	1021.00
IUUC-Hvu-047567	Hordeum vulgare	43.52	6.00e-98	350.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	97.32	0.00e+00	1025.00
IUUC-Kpa-049369	Komagataella pastoris	32.89	8.00e-61	227.00
IUUC-Lch-050074	Latimeria chalumnae	78.85	0.00e+00	813.00
IUUC-Lpe-051333	Leersia perrieri	44.03	5.00e-99	354.00
IUUC-Loc-052164	Lepisosteus oculatus	79.84	0.00e+00	827.00
IUUC-Lma-053088	Leptosphaeria maculans	36.90	2.00e-84	306.00
IUUC-Laf-053460	Loxodonta africana	96.94	0.00e+00	1018.00
IUUC-Mcc-055859	Macaca mulatta	97.83	0.00e+00	1001.00
IUUC-Meu-056134	Macropus eugenii	93.01	0.00e+00	978.00
IUUC-Mor-057251	Magnaporthe oryzae	37.18	2.00e-85	310.00
IUUC-Mpo-057375	Magnaporthe poae	40.00	3.00e-53	201.00
IUUC-Mtr-057656	Medicago truncatula	44.96	2.00e-94	340.00
IUUC-Mla-059145	Melampsora laricipopulina	40.22	6.00e-101	361.00
IUUC-Mga-059855	Meleagris gallopavo	86.04	0.00e+00	932.00
IUUC-Mvi-060372	Microbotryum violaceum	41.48	1.00e-92	333.00
IUUC-Mmr-060826	Microcebus murinus	96.44	0.00e+00	1014.00
IUUC-Mdo-062748	Monodelphis domestica	94.07	0.00e+00	971.00
IUUC-Mmu-063351	Mus musculus	97.44	0.00e+00	998.00
IUUC-Mac-064846	Musa acuminata	45.16	2.00e-97	349.00
IUUC-Mpu-066006	Mustela putorius furo	97.83	0.00e+00	1001.00
IUUC-Mlu-067398	Myotis lucifugus	97.55	0.00e+00	1015.00
IUUC-Nfi-068399	Neosartorya fischeri	38.48	5.00e-101	361.00
IUUC-Ncr-068711	Neurospora crassa	37.08	2.00e-91	329.00
IUUC-Nle-069982	Nomascus leucogenys	97.71	0.00e+00	1025.00
IUUC-Opr-070596	Ochotona princeps	96.94	0.00e+00	1020.00
IUUC-Ont-072374	Oreochromis niloticus	74.00	0.00e+00	757.00
IUUC-Oan-073166	Ornithorhynchus anatinus	91.82	0.00e+00	743.00
IUUC-Ocu-074371	Oryctolagus cuniculus	97.63	0.00e+00	1000.00
IUUC-Oba-075083	Oryza barthii	43.84	2.00e-102	366.00
IUUC-Obr-076405	Oryza brachyantha	43.79	7.00e-99	353.00
IUUC-Ogl-077683	Oryza glaberrima	43.64	3.00e-102	365.00
IUUC-Ogu-078486	Oryza glumaepatula	43.86	5.00e-102	364.00
IUUC-Oin-079679	Oryza indica	43.84	4.00e-105	375.00
IUUC-Olo-080243	Oryza longistaminata	43.11	2.00e-90	325.00
IUUC-Ome-081230	Oryza meridionalis	43.64	5.00e-105	374.00
IUUC-Oni-082961	Oryza nivara	43.64	5.00e-105	374.00
IUUC-Opu-083189	Oryza punctata	42.76	1.00e-101	363.00
IUUC-Oru-084353	Oryza rufipogon	43.93	8.00e-103	367.00
IUUC-Osa-085458	Oryza sativa	43.64	5.00e-105	374.00
IUUC-Ola-086940	Oryzias latipes	73.56	0.00e+00	752.00
IUUC-Olu-087580	Ostreococcus lucimarinus	35.26	5.00e-65	241.00
IUUC-Oga-088703	Otolemur garnettii	91.74	0.00e+00	975.00
IUUC-Oar-089829	Ovis aries	97.16	0.00e+00	1001.00
IUUC-Ptr-090838	Pan troglodytes	97.32	0.00e+00	1021.00
IUUC-Pan-092261	Papio anubis	97.14	0.00e+00	1017.00
IUUC-Psi-093020	Pelodiscus sinensis	87.93	0.00e+00	941.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.72	2.00e-80	293.00
IUUC-Ppa-095531	Physcomitrella patens	45.14	1.00e-117	416.00
IUUC-Pfo-096812	Poecilia formosa	68.90	0.00e+00	669.00
IUUC-Pab-097805	Pongo abelii	87.52	0.00e+00	878.00
IUUC-Pop-100051	Populus trichocarpa	46.41	4.00e-106	378.00
IUUC-Pca-100152	Procavia capensis	97.28	0.00e+00	1008.00
IUUC-Ppe-101244	Prunus persica	46.40	7.00e-107	380.00
IUUC-Pva-102529	Pteropus vampyrus	93.69	0.00e+00	974.00
IUUC-Pgr-103550	Puccinia graminis	36.49	3.00e-102	365.00
IUUC-Ptt-103951	Puccinia triticina	34.01	4.00e-81	295.00
IUUC-Pte-104151	Pyrenophora teres	37.58	2.00e-80	293.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	38.23	4.00e-82	298.00
IUUC-Rno-105747	Rattus norvegicus	97.63	0.00e+00	999.00
IUUC-Sce-106418	Saccharomyces cerevisiae	33.19	1.00e-66	246.00
IUUC-Sha-107334	Sarcophilus harrisii	94.27	0.00e+00	971.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	34.81	1.00e-69	256.00
IUUC-Spo-108189	Schizosaccharomyces pombe	37.81	8.00e-83	300.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	37.77	2.00e-95	343.00
IUUC-Smo-108924	Selaginella moellendorffii	45.86	3.00e-109	388.00
IUUC-Sit-110102	Setaria italica	44.12	3.00e-103	369.00
IUUC-Sly-111668	Solanum lycopersicum	47.18	4.00e-109	388.00
IUUC-Stu-111928	Solanum tuberosum	46.73	2.00e-108	386.00
IUUC-Sar-113266	Sorex araneus	84.42	0.00e+00	813.00
IUUC-Sbi-114134	Sorghum bicolor	43.89	1.00e-103	370.00
IUUC-Sre-115114	Sporisorium reilianum	41.77	9.00e-105	373.00
IUUC-Ssc-115443	Sus scrofa	97.83	0.00e+00	1001.00
IUUC-Tgu-117157	Taeniopygia guttata	88.87	0.00e+00	878.00
IUUC-Tru-118587	Takifugu rubripes	73.14	0.00e+00	733.00
IUUC-Tsy-119157	Tarsius syrichta	97.44	0.00e+00	776.00
IUUC-Tni-120427	Tetraodon nigroviridis	73.52	0.00e+00	742.00
IUUC-Tca-121368	Theobroma cacao	45.00	3.00e-109	389.00
IUUC-Tre-122074	Trichoderma reesei	37.23	1.00e-88	320.00
IUUC-Tvi-122349	Trichoderma virens	36.52	1.00e-86	313.00
IUUC-Tae-125651	Triticum aestivum	44.32	1.00e-103	370.00
IUUC-Tur-126532	Triticum urartu	43.34	1.00e-89	323.00
IUUC-Tme-126951	Tuber melanosporum	40.63	2.00e-101	362.00
IUUC-Tbe-128136	Tupaia belangeri	89.29	0.00e+00	912.00
IUUC-Ttr-129169	Tursiops truncatus	97.65	1.00e-165	575.00
IUUC-Uma-129399	Ustilago maydis	42.17	4.00e-101	361.00
IUUC-Vda-129842	Verticillium dahliae	37.47	9.00e-94	337.00
IUUC-Vpa-130440	Vicugna pacos	97.51	0.00e+00	1022.00
IUUC-Vvi-131075	Vitis vinifera	47.85	4.00e-107	382.00
IUUC-Xtr-132713	Xenopus tropicalis	47.65	4.00e-106	378.00
IUUC-Xma-133002	Xiphophorus maculatus	79.11	5.00e-171	593.00
IUUC-Yli-134569	Yarrowia lipolytica	35.60	4.00e-75	275.00
IUUC-Zma-135799	Zea mays	42.18	5.00e-102	364.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence