iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA
Protein-protein Interaction
PINA	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	11864566

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.0024	18.2	24	66

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 103  ldrlpeeilveilklldkeellraarvcrrwqelasqkalwkt 145
            + +p+e+   i+++ldk++ll++++ c+r++ l+s++++w +
   Q: 24   AETVPNECFSPIFRRLDKKSLLNCQLACHRFNDLISSDSFWIE 66
           6789****************************88888999986 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MFKAFSSIMQ SLQFKTDVPV IIDAETVPNE CFSPIFRRLD KKSLLNCQLA CHRFNDLISS 60
DSFWIEYARI LNISNVLPSL EWRRAATQKK FVGNEDNEID TSSFNFNIKK IVLSGRGYSP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACCCCAAAT GTTTAAAGCG TTCTCATCGA TAATGCAAAG TCTACAGTTC AAAACCGATG 60
TTCCAGTGAT AATGTGAGTT TTTTCTTAAT TAAAATATCA ATTTTTCACC TAGAATTATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR007397--F-box-assoc_dom
IPR001810--F-box_dom
IPR008979--Galactose-bd-like

PROSITE

PS51114--FBA
PS50181--FBOX

Pfam

PF12937--F-box-like
PF04300--FBA

SMART

SM01198--FBA
SM00256--FBOX

KEGG

cel:CELE_C14B1.3

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000304	Aegilops tauschii	36.36	3.60e-01	29.60
IUUC-Aml-002387	Ailuropoda melanoleuca	27.92	2.00e-12	65.10
IUUC-Apl-003256	Anas platyrhynchos	25.85	5.00e-11	60.10
IUUC-Aca-005151	Anolis carolinensis	26.53	4.00e-08	50.40
IUUC-Ath-006895	Arabidopsis thaliana	18.46	3.80e-02	32.00
IUUC-Ame-011181	Astyanax mexicanus	30.20	5.00e-14	70.10
IUUC-Bta-012446	Bos taurus	23.05	1.00e-13	68.60
IUUC-Bci-013696	Botrytis cinerea	27.66	1.70e-01	28.90
IUUC-Cja-019690	Callithrix jacchus	29.25	1.00e-13	68.90
IUUC-Cfa-020399	Canis familiaris	29.22	8.00e-14	69.70
IUUC-Cpo-022113	Cavia porcellus	30.61	1.00e-14	72.00
IUUC-Csa-023732	Chlorocebus sabaeus	29.22	2.00e-14	71.60
IUUC-Dre-027967	Danio rerio	29.80	6.00e-16	76.60
IUUC-Dno-029725	Dasypus novemcinctus	29.33	2.00e-12	65.10
IUUC-Dor-030820	Dipodomys ordii	30.64	7.00e-15	73.20
IUUC-Dse-031528	Dothistroma septosporum	39.02	1.80e-02	32.70
IUUC-Ete-032617	Echinops telfairi	29.93	2.00e-14	70.50
IUUC-Eca-033658	Equus caballus	29.61	2.00e-12	64.30
IUUC-Eeu-035144	Erinaceus europaeus	27.92	2.00e-13	68.60
IUUC-Fca-036511	Felis catus	23.57	5.00e-14	70.10
IUUC-Fal-037154	Ficedula albicollis	27.21	1.00e-11	62.00
IUUC-Gmo-039430	Gadus morhua	22.54	1.00e-05	41.20
IUUC-Gga-041011	Gallus gallus	26.53	5.00e-11	60.10
IUUC-Gac-041813	Gasterosteus aculeatus	32.72	5.00e-17	80.10
IUUC-Gma-043764	Glycine max	23.44	2.00e-03	36.60
IUUC-Ggo-044771	Gorilla gorilla	23.21	2.00e-14	71.60
IUUC-Hsa-046047	Homo sapiens	29.22	3.00e-14	70.90
IUUC-Itr-048961	Ictidomys tridecemlineatus	24.73	5.00e-14	70.10
IUUC-Lch-049839	Latimeria chalumnae	25.64	1.00e-12	65.50
IUUC-Lpe-051032	Leersia perrieri	31.48	7.00e-03	35.00
IUUC-Loc-052041	Lepisosteus oculatus	22.88	2.00e-11	61.60
IUUC-Lma-052967	Leptosphaeria maculans	29.69	2.00e-03	35.80
IUUC-Laf-054388	Loxodonta africana	28.57	1.00e-13	68.60
IUUC-Mcc-055219	Macaca mulatta	29.22	2.00e-14	71.60
IUUC-Meu-056508	Macropus eugenii	29.22	2.00e-13	68.20
IUUC-Mga-060039	Meleagris gallopavo	27.21	3.00e-11	60.80
IUUC-Mmr-060599	Microcebus murinus	28.95	9.00e-14	69.30
IUUC-Mdo-061904	Monodelphis domestica	25.73	2.00e-12	64.70
IUUC-Mmu-064158	Mus musculus	29.73	4.00e-14	70.50
IUUC-Mac-065212	Musa acuminata	32.50	6.00e-04	36.60
IUUC-Mpu-065798	Mustela putorius furo	23.03	7.00e-15	72.80
IUUC-Mlu-067931	Myotis lucifugus	29.87	4.00e-13	67.40
IUUC-Ncr-068797	Neurospora crassa	36.49	9.00e-05	41.20
IUUC-Nle-069509	Nomascus leucogenys	27.21	3.00e-11	61.20
IUUC-Opr-070619	Ochotona princeps	31.82	4.00e-15	73.90
IUUC-Ont-072665	Oreochromis niloticus	28.40	1.00e-13	68.90
IUUC-Oan-073142	Ornithorhynchus anatinus	27.89	6.00e-12	63.20
IUUC-Ocu-074270	Oryctolagus cuniculus	31.82	5.00e-14	70.10
IUUC-Oba-075410	Oryza barthii	33.33	7.00e-02	31.60
IUUC-Ogl-077729	Oryza glaberrima	33.33	7.00e-02	31.60
IUUC-Ogu-077953	Oryza glumaepatula	33.33	8.70e-02	31.60
IUUC-Oin-079638	Oryza indica	33.33	1.30e-02	31.60
IUUC-Olo-080966	Oryza longistaminata	34.15	3.50e-02	32.70
IUUC-Oni-082495	Oryza nivara	33.33	7.00e-02	31.60
IUUC-Opu-083767	Oryza punctata	32.50	7.80e-02	30.00
IUUC-Oru-084884	Oryza rufipogon	33.33	7.00e-02	31.60
IUUC-Osa-085690	Oryza sativa	33.33	7.00e-02	31.60
IUUC-Ola-086867	Oryzias latipes	22.83	3.00e-12	63.90
IUUC-Oga-088988	Otolemur garnettii	23.55	9.00e-14	69.30
IUUC-Oar-089871	Ovis aries	23.73	2.00e-13	68.20
IUUC-Ptr-091362	Pan troglodytes	29.22	3.00e-14	70.90
IUUC-Pan-091935	Papio anubis	29.22	2.00e-14	72.00
IUUC-Psi-092980	Pelodiscus sinensis	22.02	3.00e-11	60.80
IUUC-Pfo-097249	Poecilia formosa	26.28	8.00e-15	72.80
IUUC-Pab-098167	Pongo abelii	29.22	3.00e-14	70.90
IUUC-Pop-099194	Populus trichocarpa	23.44	2.00e-03	36.20
IUUC-Pca-100483	Procavia capensis	29.61	3.00e-14	70.10
IUUC-Ppe-101766	Prunus persica	41.86	3.00e-03	33.90
IUUC-Pva-103073	Pteropus vampyrus	25.44	7.00e-15	73.20
IUUC-Ptt-103969	Puccinia triticina	25.25	5.00e-03	34.30
IUUC-Pyt-104608	Pyrenophora triticirepentis	28.81	1.00e-03	35.80
IUUC-Rno-106045	Rattus norvegicus	25.09	1.00e-14	72.00
IUUC-Sha-107560	Sarcophilus harrisii	30.67	6.00e-14	69.70
IUUC-Smo-109386	Selaginella moellendorffii	37.78	3.00e-03	34.30
IUUC-Sit-109871	Setaria italica	37.50	1.00e-03	37.70
IUUC-Sly-111060	Solanum lycopersicum	24.62	8.00e-05	40.80
IUUC-Stu-112846	Solanum tuberosum	24.62	8.00e-05	40.80
IUUC-Sar-113378	Sorex araneus	28.87	2.00e-12	64.70
IUUC-Sbi-113893	Sorghum bicolor	37.50	5.60e-02	32.00
IUUC-Ssc-115889	Sus scrofa	23.43	4.00e-14	70.10
IUUC-Tgu-116573	Taeniopygia guttata	27.89	4.00e-13	67.00
IUUC-Tru-117734	Takifugu rubripes	29.53	1.00e-13	68.60
IUUC-Tni-120432	Tetraodon nigroviridis	26.03	3.00e-17	80.90
IUUC-Tca-121064	Theobroma cacao	42.50	1.00e-03	35.80
IUUC-Tvi-122301	Trichoderma virens	34.69	1.20e-01	29.30
IUUC-Tae-122813	Triticum aestivum	29.41	4.00e-03	35.80
IUUC-Tbe-127475	Tupaia belangeri	25.27	2.00e-14	71.20
IUUC-Ttr-129048	Tursiops truncatus	22.64	4.00e-14	70.90
IUUC-Vvi-131131	Vitis vinifera	23.08	5.00e-05	41.60
IUUC-Xtr-132515	Xenopus tropicalis	28.70	3.00e-05	40.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence