iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006276

UUCD1 version

UUC-ArL-00626

Ensembl Protein ID

fgenesh1_pm.C_scaffold_2000469

UniProt Accession

D7KYM7; D7KYM7_ARALL

Genbank Protein ID

EFH62994.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348714

Gene Name

VIM1; ARALYDRAFT_315436

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pm.C_scaffold_2000469	fgenesh1_pm.C_scaffold_2000469	fgenesh1_pm.C_scaffold_2000469

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.50e-07	30.2	140	189
E3 activity/RING/RING	1.10e-07	32.9	143	182

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteed 54
            ++C+  ++l++ Pv+ p+G+    ++ ekw+ +g++tc ++r+ + e++
   Q: 140  NLMCSFCMQLPERPVTKPCGHNACLKCFEKWMGQGKRTCGKCRSVIPEKM 189
           689**************************************999886655 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C++ +++ p++ pCgH  +++C++kw     + +++ +C  Cr
   Q: 143  CSFCMQLPER-PVTKPCGHNACLKCFEKW-----MGQGKRTCGKCR 182
           **********.9*9***************.....7999999*9997 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MARDIQLPCD GDGVCMRCKS KPPPEESLTC GTCVTPWHVS CLSTPPETLA STLQWHCPDC 60
SGEIDPLPVS GDVSGYGSVG SDLVAAIRAI EADESLSTEE KAKKRQQLLS GKGVVEDDEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCGTG ACATCCAACT CCCCTGCGAC GGCGACGGTG TATGCATGCG ATGCAAATCC 60
AAACCTCCGC CTGAAGAATC TCTCACTTGC GGCACGTGCG TTACGCCGTG GCACGTGTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015947--PUA-like_domain
IPR003105--SRA_YDG
IPR019786--Zinc_finger_PHD-type_CS
IPR027370--Znf-RING_LisH
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51015--YDG
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF02182--SAD_SRA
PF13445--zf-RING_UBOX

SMART

SM00249--PHD
SM00184--RING
SM00466--SRA

Gene Ontology

GO:0010369--C:chromocenter
GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0010385--F:double-stranded methylated DNA binding
GO:0008327--F:methyl-CpG binding
GO:0010428--F:methyl-CpNpG binding
GO:0010429--F:methyl-CpNpN binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0051301--P:cell division
GO:0010424--P:DNA methylation on cytosine within a CG sequence
GO:0031508--P:pericentric heterochromatin assembly
GO:0090309--P:positive regulation of methylation-dependent chromatin silencing

KEGG

aly:ARALYDRAFT_315436

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000242	Aegilops tauschii	72.79	5.00e-169	587.00
IUUC-Aml-001401	Ailuropoda melanoleuca	32.76	1.00e-48	187.00
IUUC-Atr-002603	Amborella trichopoda	64.74	0.00e+00	800.00
IUUC-Apl-003819	Anas platyrhynchos	36.88	4.00e-53	202.00
IUUC-Ath-006667	Arabidopsis thaliana	89.85	0.00e+00	1139.00
IUUC-Bta-012600	Bos taurus	35.05	4.00e-51	196.00
IUUC-Bdi-014586	Brachypodium distachyon	65.50	0.00e+00	774.00
IUUC-Bol-015519	Brassica oleracea	81.34	0.00e+00	1057.00
IUUC-Bra-017110	Brassica rapa	81.06	0.00e+00	1062.00
IUUC-Cja-018864	Callithrix jacchus	49.54	1.00e-46	181.00
IUUC-Cfa-020558	Canis familiaris	49.07	2.00e-45	177.00
IUUC-Cpo-022125	Cavia porcellus	38.39	2.00e-55	209.00
IUUC-Cre-022645	Chlamydomonas reinhardtii	35.24	7.00e-81	294.00
IUUC-Csa-023951	Chlorocebus sabaeus	32.27	1.00e-47	184.00
IUUC-Cin-025454	Ciona intestinalis	35.35	9.00e-47	181.00
IUUC-Cgl-026498	Colletotrichum gloeosporioides	34.40	4.00e-11	62.40
IUUC-Cne-026942	Cryptococcus neoformans	46.71	5.00e-32	129.00
IUUC-Dor-031084	Dipodomys ordii	35.28	2.00e-51	196.00
IUUC-Eca-033266	Equus caballus	49.07	3.00e-45	176.00
IUUC-Eeu-035077	Erinaceus europaeus	50.29	7.00e-39	154.00
IUUC-Fca-035570	Felis catus	34.01	1.00e-44	174.00
IUUC-Fal-037550	Ficedula albicollis	37.47	8.00e-53	201.00
IUUC-Gmo-038826	Gadus morhua	34.68	2.00e-50	193.00
IUUC-Gga-040484	Gallus gallus	36.57	1.00e-53	204.00
IUUC-Gac-042196	Gasterosteus aculeatus	36.87	1.00e-50	194.00
IUUC-Gma-044194	Glycine max	66.11	0.00e+00	803.00
IUUC-Ggo-045639	Gorilla gorilla	32.59	1.00e-47	184.00
IUUC-Hsa-046422	Homo sapiens	33.09	1.00e-47	184.00
IUUC-Hvu-047471	Hordeum vulgare	72.23	0.00e+00	677.00
IUUC-Lch-050162	Latimeria chalumnae	37.82	2.00e-48	186.00
IUUC-Lpe-050756	Leersia perrieri	63.22	0.00e+00	807.00
IUUC-Loc-051806	Lepisosteus oculatus	36.72	2.00e-49	190.00
IUUC-Lma-052953	Leptosphaeria maculans	29.17	8.00e-11	61.20
IUUC-Laf-053529	Loxodonta africana	32.67	1.00e-47	184.00
IUUC-Mcc-055815	Macaca mulatta	32.27	2.00e-47	183.00
IUUC-Meu-056189	Macropus eugenii	54.10	5.00e-29	122.00
IUUC-Mtr-058805	Medicago truncatula	65.15	0.00e+00	786.00
IUUC-Mla-058836	Melampsora laricipopulina	50.64	1.00e-39	157.00
IUUC-Mga-059759	Meleagris gallopavo	35.21	2.00e-53	203.00
IUUC-Mdo-061911	Monodelphis domestica	49.54	7.00e-46	178.00
IUUC-Mmu-063738	Mus musculus	36.72	9.00e-52	197.00
IUUC-Mac-064697	Musa acuminata	64.40	0.00e+00	801.00
IUUC-Mpu-065830	Mustela putorius furo	32.84	2.00e-49	188.00
IUUC-Mlu-067538	Myotis lucifugus	50.24	8.00e-46	178.00
IUUC-Ncr-068942	Neurospora crassa	29.71	5.00e-07	48.50
IUUC-Nle-069901	Nomascus leucogenys	32.84	3.00e-47	182.00
IUUC-Ont-072292	Oreochromis niloticus	50.73	7.00e-45	174.00
IUUC-Oan-073109	Ornithorhynchus anatinus	34.66	1.00e-50	193.00
IUUC-Ocu-074748	Oryctolagus cuniculus	34.54	6.00e-47	181.00
IUUC-Oba-075108	Oryza barthii	64.39	0.00e+00	806.00
IUUC-Obr-076572	Oryza brachyantha	64.25	0.00e+00	783.00
IUUC-Ogl-077177	Oryza glaberrima	64.58	0.00e+00	803.00
IUUC-Ogu-078298	Oryza glumaepatula	64.58	0.00e+00	803.00
IUUC-Oin-079911	Oryza indica	64.39	0.00e+00	806.00
IUUC-Olo-080527	Oryza longistaminata	56.53	0.00e+00	709.00
IUUC-Ome-081137	Oryza meridionalis	62.02	0.00e+00	757.00
IUUC-Oni-082620	Oryza nivara	64.39	0.00e+00	806.00
IUUC-Opu-083974	Oryza punctata	63.69	0.00e+00	799.00
IUUC-Oru-084976	Oryza rufipogon	64.58	0.00e+00	803.00
IUUC-Osa-085339	Oryza sativa	64.58	0.00e+00	803.00
IUUC-Ola-086416	Oryzias latipes	50.72	2.00e-45	176.00
IUUC-Oga-088221	Otolemur garnettii	36.75	6.00e-51	195.00
IUUC-Oar-090189	Ovis aries	32.59	3.00e-48	186.00
IUUC-Ptr-090559	Pan troglodytes	49.54	2.00e-46	179.00
IUUC-Pan-092855	Papio anubis	49.07	1.00e-45	177.00
IUUC-Pma-094339	Petromyzon marinus	49.77	7.00e-46	178.00
IUUC-Ppa-095940	Physcomitrella patens	59.46	0.00e+00	741.00
IUUC-Pfo-096243	Poecilia formosa	50.24	4.00e-44	172.00
IUUC-Pab-098211	Pongo abelii	32.02	2.00e-46	180.00
IUUC-Pop-099561	Populus trichocarpa	66.09	0.00e+00	842.00
IUUC-Ppe-101961	Prunus persica	73.12	0.00e+00	895.00
IUUC-Pva-102240	Pteropus vampyrus	49.07	8.00e-46	178.00
IUUC-Pgr-103644	Puccinia graminis	53.42	1.00e-37	150.00
IUUC-Ptt-103867	Puccinia triticina	53.21	4.00e-41	162.00
IUUC-Pyt-104740	Pyrenophora triticirepentis	28.71	1.00e-15	78.20
IUUC-Rno-105345	Rattus norvegicus	36.72	1.00e-51	197.00
IUUC-Sha-106687	Sarcophilus harrisii	35.70	2.00e-51	196.00
IUUC-Smo-109319	Selaginella moellendorffii	54.95	0.00e+00	641.00
IUUC-Sit-110588	Setaria italica	60.47	0.00e+00	782.00
IUUC-Sly-111415	Solanum lycopersicum	64.23	0.00e+00	823.00
IUUC-Stu-112842	Solanum tuberosum	63.82	0.00e+00	817.00
IUUC-Sar-113546	Sorex araneus	46.40	3.00e-24	106.00
IUUC-Sbi-114726	Sorghum bicolor	64.24	0.00e+00	776.00
IUUC-Sre-115182	Sporisorium reilianum	43.01	2.00e-32	132.00
IUUC-Ssc-116081	Sus scrofa	48.61	5.00e-45	175.00
IUUC-Tgu-116945	Taeniopygia guttata	47.91	1.00e-46	180.00
IUUC-Tru-117599	Takifugu rubripes	50.24	5.00e-46	178.00
IUUC-Tsy-119249	Tarsius syrichta	33.50	2.00e-47	182.00
IUUC-Tni-119843	Tetraodon nigroviridis	37.63	6.00e-52	198.00
IUUC-Tca-121614	Theobroma cacao	71.29	0.00e+00	889.00
IUUC-Tae-125473	Triticum aestivum	66.39	0.00e+00	732.00
IUUC-Tme-127149	Tuber melanosporum	44.39	2.00e-23	102.00
IUUC-Ttr-128522	Tursiops truncatus	34.78	8.00e-48	184.00
IUUC-Vda-129727	Verticillium dahliae	33.08	3.00e-12	65.10
IUUC-Vpa-130073	Vicugna pacos	32.91	5.00e-48	185.00
IUUC-Vvi-131413	Vitis vinifera	68.06	0.00e+00	855.00
IUUC-Xtr-132432	Xenopus tropicalis	35.63	5.00e-52	198.00
IUUC-Xma-133516	Xiphophorus maculatus	35.86	9.00e-50	191.00
IUUC-Zma-135894	Zea mays	65.72	0.00e+00	785.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence