iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114193

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G365900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g038500	Sb02g038500.1	Sb02g038500.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-38	128.5	358	392
UBD/Beta-Prp	9.60e-46	157.1	199	425

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H++++t++++  s+  +lvs+s Dg++++WDlrt 
   Q: 358  HSGWITACKWhpSScFHLVSSSFDGKVMLWDLRTA 392
           9**********744688***************996 PP

UBD/Beta-Prp

   S: 47   slsgheaevtavkfspdgkilvtgseDrtikvwdls...........................tgkcvhtlkghedsvlslsfspsgdklvsGshd 115
            l gh+a v++++ +p+g++l +gs D+tik+w ++                            g+ ++tl gh++ v+s+++ + ++++ s+s+d
   Q: 199  ILRGHTASVKSISVDPSGDMLCSGSWDNTIKLWAVErsedddavslkkrrmnsdssgpeesqlEGSATSTLLGHTQGVTSVAWPE-QKTIYSASWD 293
           589******************************888888999999**************************************88.9********* PP
   S: 116  rtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtl..tgghtdsvyslsfdsng.kelvsgsldgtvkl 206
             +r wd++t ++    +    ++ nc+   ++g +l+++G+ D ++r+Wd  k g+l   +  ++ h + ++  ++++++ ++lvs s dg+v l
   Q: 294  HSVRQWDIQTVKETW--NMFCGKALNCLDCGGEGsSLIAAGGSDPVLRVWDPrKPGTLAPVFqfSS-HSGWITACKWHPSScFHLVSSSFDGKVML 386
           ************995..7777788***************************965566666665487.*************9*************** PP
   S: 207  wdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
           wdl+t   + ++  h+d v++ + + +++ ++sg++D  +
   Q: 387  WDLRTAWPLASVDSHEDKVLCADWW-KGNSVISGGADSKL 425
           *************************.99********9876 PP

Organism

Sorghum bicolor

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDGDPSRQVR VRFVTKLPPP LRAPPAAIAV PADLTRMGLS EIVNSLLAAA EPDHQTQPFD 60
FIVDGELVRL PLQEFLLAKG ISAERVLELE YVKAVAPRKQ EEPCPHDDWV SAVDGSNSGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAGGCCAA AACCCTCCTC CGGCCCTTCC CGCCGCCGCC ACCCCGCCGG GCACCACCAC 60
CTCCTCGTTC TCCTTCCGTC CGCCGTCGCC GTCGCCGTCG CCGCGATGGA CGGCGACCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_02g038285

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	84.33	0.00e+00	723.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.73	5.00e-56	211.00
IUUC-Atr-002544	Amborella trichopoda	62.12	1.00e-152	531.00
IUUC-Apl-003981	Anas platyrhynchos	34.83	6.00e-57	213.00
IUUC-Aca-004370	Anolis carolinensis	35.90	2.00e-62	232.00
IUUC-Aly-006455	Arabidopsis lyrata	62.41	9.00e-157	545.00
IUUC-Ath-006669	Arabidopsis thaliana	61.61	6.00e-152	529.00
IUUC-Ago-007864	Ashbya gossypii	30.89	2.00e-47	182.00
IUUC-Acl-008177	Aspergillus clavatus	28.27	9.00e-39	153.00
IUUC-Afl-008617	Aspergillus flavus	28.85	1.00e-35	143.00
IUUC-Afu-008752	Aspergillus fumigatus	27.79	3.00e-34	138.00
IUUC-Ani-009136	Aspergillus nidulans	29.08	2.00e-39	155.00
IUUC-Ang-009701	Aspergillus niger	27.84	5.00e-35	141.00
IUUC-Aor-009884	Aspergillus oryzae	28.85	5.00e-36	144.00
IUUC-Ame-011432	Astyanax mexicanus	36.50	4.00e-64	238.00
IUUC-Bgr-012218	Blumeria graminis	30.20	6.00e-40	157.00
IUUC-Bta-012829	Bos taurus	34.96	1.00e-56	212.00
IUUC-Bci-013953	Botrytis cinerea	29.11	8.00e-36	144.00
IUUC-Bdi-014351	Brachypodium distachyon	85.45	0.00e+00	706.00
IUUC-Bol-016514	Brassica oleracea	62.61	7.00e-148	516.00
IUUC-Bra-016988	Brassica rapa	62.61	3.00e-148	517.00
IUUC-Cel-018569	Caenorhabditis elegans	25.69	3.00e-27	115.00
IUUC-Cja-019468	Callithrix jacchus	35.48	3.00e-54	204.00
IUUC-Cfa-020471	Canis familiaris	35.22	2.00e-54	206.00
IUUC-Cpo-022260	Cavia porcellus	36.50	1.00e-56	212.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.29	5.00e-58	217.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.22	2.00e-54	205.00
IUUC-Cho-024426	Choloepus hoffmanni	33.64	4.00e-42	164.00
IUUC-Cin-025789	Ciona intestinalis	31.14	2.00e-50	192.00
IUUC-Cne-027063	Cryptococcus neoformans	26.62	4.00e-25	108.00
IUUC-Dre-027907	Danio rerio	37.28	6.00e-65	240.00
IUUC-Dno-029225	Dasypus novemcinctus	35.73	4.00e-57	214.00
IUUC-Dor-031082	Dipodomys ordii	32.38	2.00e-24	105.00
IUUC-Dse-031308	Dothistroma septosporum	32.26	2.00e-49	189.00
IUUC-Dme-032189	Drosophila melanogaster	30.56	9.00e-45	173.00
IUUC-Ete-032247	Echinops telfairi	33.08	1.00e-49	189.00
IUUC-Eca-034285	Equus caballus	35.22	2.00e-55	208.00
IUUC-Eeu-035322	Erinaceus europaeus	30.56	6.00e-46	177.00
IUUC-Fca-036114	Felis catus	35.22	4.00e-56	211.00
IUUC-Fal-036891	Ficedula albicollis	34.51	1.00e-50	192.00
IUUC-Fox-037965	Fusarium oxysporum	25.49	7.00e-30	124.00
IUUC-Fso-038244	Fusarium solani	27.75	6.00e-34	137.00
IUUC-Gmo-039040	Gadus morhua	36.32	1.00e-66	245.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.58	7.00e-24	104.00
IUUC-Gga-040610	Gallus gallus	35.11	4.00e-60	224.00
IUUC-Gac-042117	Gasterosteus aculeatus	36.32	3.00e-64	238.00
IUUC-Gma-043756	Glycine max	62.62	1.00e-157	548.00
IUUC-Ggo-045179	Gorilla gorilla	34.96	7.00e-54	203.00
IUUC-Hsa-046114	Homo sapiens	35.22	2.00e-54	205.00
IUUC-Hvu-047331	Hordeum vulgare	83.67	0.00e+00	664.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.73	5.00e-57	214.00
IUUC-Kpa-049304	Komagataella pastoris	27.98	3.00e-41	161.00
IUUC-Lch-050655	Latimeria chalumnae	31.19	8.00e-38	150.00
IUUC-Lpe-051675	Leersia perrieri	82.83	0.00e+00	695.00
IUUC-Loc-052868	Lepisosteus oculatus	35.29	2.00e-62	232.00
IUUC-Lma-053258	Leptosphaeria maculans	30.75	4.00e-38	153.00
IUUC-Laf-053993	Loxodonta africana	34.86	3.00e-56	211.00
IUUC-Mcc-055128	Macaca mulatta	29.00	8.00e-33	133.00
IUUC-Meu-056501	Macropus eugenii	33.33	1.00e-47	182.00
IUUC-Mor-057114	Magnaporthe oryzae	28.20	2.00e-35	142.00
IUUC-Mtr-058367	Medicago truncatula	60.56	2.00e-147	514.00
IUUC-Mla-059107	Melampsora laricipopulina	25.54	5.00e-36	144.00
IUUC-Mga-059745	Meleagris gallopavo	34.94	7.00e-60	223.00
IUUC-Mvi-060362	Microbotryum violaceum	24.19	2.00e-26	112.00
IUUC-Mdo-062257	Monodelphis domestica	35.28	3.00e-61	228.00
IUUC-Mmu-063546	Mus musculus	35.62	7.00e-57	213.00
IUUC-Mac-065540	Musa acuminata	70.12	5.00e-172	596.00
IUUC-Mpu-066284	Mustela putorius furo	35.22	2.00e-56	212.00
IUUC-Mlu-067241	Myotis lucifugus	35.22	1.00e-56	213.00
IUUC-Nfi-068260	Neosartorya fischeri	28.12	6.00e-37	147.00
IUUC-Ncr-068719	Neurospora crassa	28.64	3.00e-30	125.00
IUUC-Nle-068981	Nomascus leucogenys	35.48	3.00e-53	201.00
IUUC-Opr-071218	Ochotona princeps	33.69	4.00e-51	194.00
IUUC-Ont-071646	Oreochromis niloticus	35.99	6.00e-60	223.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.45	2.00e-63	235.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.73	3.00e-57	214.00
IUUC-Oba-075712	Oryza barthii	71.76	7.00e-165	572.00
IUUC-Obr-076721	Oryza brachyantha	82.18	0.00e+00	699.00
IUUC-Ogl-077229	Oryza glaberrima	82.87	0.00e+00	706.00
IUUC-Ogu-078977	Oryza glumaepatula	72.22	4.00e-166	576.00
IUUC-Oin-079683	Oryza indica	83.10	0.00e+00	707.00
IUUC-Olo-080291	Oryza longistaminata	72.04	7.00e-123	432.00
IUUC-Ome-081834	Oryza meridionalis	82.98	0.00e+00	701.00
IUUC-Oni-082507	Oryza nivara	81.02	0.00e+00	675.00
IUUC-Opu-083396	Oryza punctata	83.10	0.00e+00	706.00
IUUC-Oru-085220	Oryza rufipogon	81.25	0.00e+00	677.00
IUUC-Osa-085767	Oryza sativa	83.10	0.00e+00	707.00
IUUC-Ola-087420	Oryzias latipes	36.60	2.00e-67	248.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.57	4.00e-56	211.00
IUUC-Oga-088264	Otolemur garnettii	34.70	2.00e-53	202.00
IUUC-Oar-089335	Ovis aries	34.70	1.00e-56	213.00
IUUC-Ptr-091320	Pan troglodytes	35.22	2.00e-54	205.00
IUUC-Pan-092833	Papio anubis	34.96	4.00e-54	204.00
IUUC-Psi-093504	Pelodiscus sinensis	33.68	2.00e-55	208.00
IUUC-Pma-094189	Petromyzon marinus	34.05	7.00e-60	223.00
IUUC-Pno-094929	Phaeosphaeria nodorum	28.57	3.00e-38	151.00
IUUC-Ppa-095429	Physcomitrella patens	50.47	2.00e-119	421.00
IUUC-Pfo-096337	Poecilia formosa	37.28	1.00e-66	246.00
IUUC-Pab-097571	Pongo abelii	35.22	2.00e-54	205.00
IUUC-Pop-099977	Populus trichocarpa	63.99	4.00e-158	550.00
IUUC-Pca-100394	Procavia capensis	32.99	3.00e-45	174.00
IUUC-Ppe-101848	Prunus persica	59.35	3.00e-153	533.00
IUUC-Pva-102921	Pteropus vampyrus	33.33	2.00e-22	99.40
IUUC-Pgr-103637	Puccinia graminis	26.46	2.00e-33	136.00
IUUC-Ptt-103781	Puccinia triticina	26.79	3.00e-33	135.00
IUUC-Pte-104135	Pyrenophora teres	30.07	7.00e-41	162.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	30.07	2.00e-40	159.00
IUUC-Rno-105114	Rattus norvegicus	35.73	1.00e-56	212.00
IUUC-Sce-106401	Saccharomyces cerevisiae	28.30	2.00e-43	169.00
IUUC-Sha-107122	Sarcophilus harrisii	35.46	7.00e-60	223.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	27.94	4.00e-35	141.00
IUUC-Spo-108134	Schizosaccharomyces pombe	27.33	2.00e-35	142.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.95	8.00e-40	157.00
IUUC-Smo-108720	Selaginella moellendorffii	48.46	9.00e-114	402.00
IUUC-Sit-110354	Setaria italica	90.11	0.00e+00	771.00
IUUC-Sly-111023	Solanum lycopersicum	56.77	1.00e-142	498.00
IUUC-Stu-112778	Solanum tuberosum	63.66	2.00e-153	534.00
IUUC-Sar-113596	Sorex araneus	31.10	1.00e-43	169.00
IUUC-Sre-115002	Sporisorium reilianum	30.05	1.00e-18	87.00
IUUC-Ssc-116066	Sus scrofa	35.22	2.00e-56	211.00
IUUC-Tgu-117048	Taeniopygia guttata	34.56	2.00e-56	212.00
IUUC-Tni-119820	Tetraodon nigroviridis	37.44	3.00e-62	231.00
IUUC-Tca-121605	Theobroma cacao	65.20	8.00e-163	565.00
IUUC-Tre-121947	Trichoderma reesei	26.29	8.00e-31	127.00
IUUC-Tvi-122481	Trichoderma virens	26.29	4.00e-31	128.00
IUUC-Tae-123504	Triticum aestivum	84.33	0.00e+00	722.00
IUUC-Tur-126586	Triticum urartu	83.92	0.00e+00	693.00
IUUC-Tme-126900	Tuber melanosporum	30.47	2.00e-46	179.00
IUUC-Tbe-127736	Tupaia belangeri	36.36	3.00e-22	99.00
IUUC-Ttr-129041	Tursiops truncatus	31.11	2.00e-39	155.00
IUUC-Uma-129628	Ustilago maydis	25.68	9.00e-11	60.80
IUUC-Vpa-130260	Vicugna pacos	35.22	2.00e-56	212.00
IUUC-Vvi-131009	Vitis vinifera	65.30	5.00e-167	579.00
IUUC-Xtr-132083	Xenopus tropicalis	36.50	4.00e-58	217.00
IUUC-Xma-133094	Xiphophorus maculatus	35.38	4.00e-65	241.00
IUUC-Yli-134531	Yarrowia lipolytica	26.06	2.00e-29	122.00
IUUC-Zma-135509	Zea mays	94.70	0.00e+00	807.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence