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Tag Content
iUUCD ID IUUC-Pno-094955
Ensembl Protein ID SNOT_06755
UniProt Accession Q0UNA9; SEC13_PHANO
Genbank Protein ID EAT85406.1
Protein Name Protein transport protein SEC13
Genbank Nucleotide ID CH445334
Gene Name SEC13; SNOG_06755
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SNOG_06755 SNOT_06755 SNOT_06755
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.70e-31 105.2 58 90
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWD 29
           gH+++v+c+a+  +   ++l+s+s+Dg++ +W+
   Q: 58   GHEGPVWCVAWahPKygNILASSSYDGKVIIWR 90
           8***********9444699*************8 PP
   
Organism Phaeosphaeria nodorum
Functional Description
(View)

Functional Description


     Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity).
 Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity).
Protein Sequence
(Fasta)
MADNGQNVDL LSIEANEVQH DAVLDYYGRR LATCSSDKTI KIFEVEGDKH TLVETLRGHE 60
GPVWCVAWAH PKYGNILASS SYDGKVIIWR EQSSTWQKIY EVALHTASVN IVAWAPHEVG 120
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Protein Fasta Sequence


>IUUC-Pno-094955|E3,WD_repeat|Phaeosphaeria nodorum
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Nucleotide Sequence
(Fasta)
ATGGCCGACA ACGGACAAAA CGTGGACCTG CTATCGATCG AAGCTAACGA GGTCCAGCAT 60
GATGCCGTGC TCGACTACTA TGGCAGACGG CTAGCGACGT GCTCTTCAGA CAAGACGATC 120
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Nucleotide Fasta Sequence


>IUUC-Pno-094955|E3,WD_repeat|Phaeosphaeria nodorum
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030127--C:COPII vesicle coat
GO:0005789--C:endoplasmic reticulum membrane
GO:0000139--C:Golgi membrane
GO:0031080--C:nuclear pore outer ring
GO:0035859--C:Seh1-associated complex
GO:0005198--F:structural molecule activity
GO:0090114--P:COPII-coated vesicle budding
GO:0051028--P:mRNA transport
GO:0031081--P:nuclear pore distribution
GO:0043547--P:positive regulation of GTPase activity
GO:1904263--P:positive regulation of TORC1 signaling
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0015031--P:protein transport
GO:0030433--P:ubiquitin-dependent ERAD pathway
KEGG pno:SNOG_06755
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000671 Aegilops tauschii 51.69 3.00e-75 273.00
IUUC-Aml-001832 Ailuropoda melanoleuca 49.34 5.00e-79 285.00
IUUC-Atr-002914 Amborella trichopoda 50.33 2.00e-72 263.00
IUUC-Apl-003992 Anas platyrhynchos 52.41 2.00e-80 290.00
IUUC-Aca-005283 Anolis carolinensis 49.01 8.00e-79 285.00
IUUC-Aly-005654 Arabidopsis lyrata 50.00 8.00e-68 248.00
IUUC-Ath-006810 Arabidopsis thaliana 50.51 2.00e-69 253.00
IUUC-Ago-007827 Ashbya gossypii 55.33 5.00e-89 318.00
IUUC-Acl-008205 Aspergillus clavatus 69.05 2.00e-116 409.00
IUUC-Afl-008748 Aspergillus flavus 68.12 1.00e-117 413.00
IUUC-Afu-008791 Aspergillus fumigatus 68.58 1.00e-117 413.00
IUUC-Ani-009152 Aspergillus nidulans 68.46 1.00e-118 417.00
IUUC-Ang-009765 Aspergillus niger 68.79 5.00e-118 415.00
IUUC-Aor-009927 Aspergillus oryzae 69.05 3.00e-117 412.00
IUUC-Ate-010248 Aspergillus terreus 68.01 8.00e-117 411.00
IUUC-Ame-011478 Astyanax mexicanus 50.00 1.00e-80 290.00
IUUC-Bgr-012276 Blumeria graminis 69.13 3.00e-115 406.00
IUUC-Bta-012700 Bos taurus 49.34 1.00e-78 284.00
IUUC-Bci-013722 Botrytis cinerea 67.81 5.00e-112 395.00
IUUC-Bdi-014818 Brachypodium distachyon 52.03 3.00e-75 273.00
IUUC-Bol-015779 Brassica oleracea 50.34 7.00e-68 248.00
IUUC-Bra-017286 Brassica rapa 48.65 8.00e-68 248.00
IUUC-Cel-018479 Caenorhabditis elegans 43.31 2.00e-59 220.00
IUUC-Cja-019956 Callithrix jacchus 50.53 4.00e-74 269.00
IUUC-Cfa-020752 Canis familiaris 49.34 4.00e-79 286.00
IUUC-Cpo-021871 Cavia porcellus 49.67 2.00e-79 287.00
IUUC-Cre-022797 Chlamydomonas reinhardtii 50.17 8.00e-76 275.00
IUUC-Csa-023393 Chlorocebus sabaeus 50.33 5.00e-80 289.00
IUUC-Cho-024786 Choloepus hoffmanni 57.14 2.00e-30 124.00
IUUC-Cin-025332 Ciona intestinalis 52.58 3.00e-80 289.00
IUUC-Csv-025926 Ciona savignyi 52.05 2.00e-79 286.00
IUUC-Cgl-026413 Colletotrichum gloeosporioides 69.69 6.00e-112 395.00
IUUC-Cne-027054 Cryptococcus neoformans 47.65 8.00e-73 265.00
IUUC-Cme-027165 Cyanidioschyzon merolae 36.54 1.00e-42 166.00
IUUC-Dre-027782 Danio rerio 50.99 8.00e-81 291.00
IUUC-Dno-029628 Dasypus novemcinctus 49.01 1.00e-78 284.00
IUUC-Dor-030650 Dipodomys ordii 49.36 7.00e-58 215.00
IUUC-Dse-031206 Dothistroma septosporum 67.46 2.00e-115 406.00
IUUC-Dme-031854 Drosophila melanogaster 48.29 2.00e-68 250.00
IUUC-Ete-032618 Echinops telfairi 32.78 1.00e-37 148.00
IUUC-Eca-033268 Equus caballus 49.67 3.00e-79 286.00
IUUC-Fca-035918 Felis catus 49.34 2.00e-79 287.00
IUUC-Fal-037551 Ficedula albicollis 52.07 4.00e-74 269.00
IUUC-Fox-037763 Fusarium oxysporum 71.38 5.00e-117 412.00
IUUC-Fso-038341 Fusarium solani 71.23 4.00e-117 412.00
IUUC-Gmo-038638 Gadus morhua 51.16 1.00e-80 291.00
IUUC-Ggr-039865 Gaeumannomyces graminis 66.78 3.00e-112 395.00
IUUC-Gga-040193 Gallus gallus 50.33 2.00e-80 290.00
IUUC-Gac-041337 Gasterosteus aculeatus 28.97 4.00e-28 117.00
IUUC-Gma-044311 Glycine max 51.74 2.00e-72 264.00
IUUC-Ggo-045252 Gorilla gorilla 50.33 4.00e-80 289.00
IUUC-Hsa-046565 Homo sapiens 50.33 5.00e-80 289.00
IUUC-Hvu-047835 Hordeum vulgare 51.69 4.00e-75 272.00
IUUC-Itr-048587 Ictidomys tridecemlineatus 49.34 6.00e-79 285.00
IUUC-Kpa-049148 Komagataella pastoris 55.14 3.00e-88 316.00
IUUC-Lch-050421 Latimeria chalumnae 52.65 8.00e-82 295.00
IUUC-Lpe-051187 Leersia perrieri 50.84 1.00e-74 274.00
IUUC-Loc-052167 Lepisosteus oculatus 50.00 1.00e-81 294.00
IUUC-Lma-053250 Leptosphaeria maculans 93.38 5.00e-158 548.00
IUUC-Laf-054304 Loxodonta africana 49.01 1.00e-78 284.00
IUUC-Mcc-055519 Macaca mulatta 50.33 5.00e-80 289.00
IUUC-Meu-056439 Macropus eugenii 50.66 2.00e-80 290.00
IUUC-Mor-057241 Magnaporthe oryzae 69.10 6.00e-113 398.00
IUUC-Mpo-057373 Magnaporthe poae 60.34 1.00e-92 330.00
IUUC-Mtr-058412 Medicago truncatula 50.51 2.00e-70 257.00
IUUC-Mla-058966 Melampsora laricipopulina 48.33 3.00e-83 300.00
IUUC-Mga-060066 Meleagris gallopavo 52.41 2.00e-80 290.00
IUUC-Mvi-060290 Microbotryum violaceum 53.48 5.00e-86 311.00
IUUC-Mmr-060717 Microcebus murinus 49.34 3.00e-79 286.00
IUUC-Mdo-062496 Monodelphis domestica 50.33 4.00e-80 289.00
IUUC-Mmu-063490 Mus musculus 50.85 6.00e-79 285.00
IUUC-Mac-065307 Musa acuminata 52.63 5.00e-73 266.00
IUUC-Mpu-066601 Mustela putorius furo 49.34 4.00e-79 286.00
IUUC-Mlu-067501 Myotis lucifugus 49.34 6.00e-79 285.00
IUUC-Nfi-068360 Neosartorya fischeri 65.89 1.00e-95 340.00
IUUC-Ncr-068928 Neurospora crassa 69.76 4.00e-117 412.00
IUUC-Nle-069028 Nomascus leucogenys 50.00 7.00e-80 288.00
IUUC-Opr-070446 Ochotona princeps 51.72 1.00e-78 284.00
IUUC-Ont-071587 Oreochromis niloticus 50.66 8.00e-82 295.00
IUUC-Oan-073211 Ornithorhynchus anatinus 49.01 7.00e-79 285.00
IUUC-Ocu-074306 Oryctolagus cuniculus 50.00 1.00e-79 288.00
IUUC-Oba-075069 Oryza barthii 51.01 4.00e-74 269.00
IUUC-Obr-076667 Oryza brachyantha 51.69 2.00e-75 273.00
IUUC-Ogl-077208 Oryza glaberrima 51.01 4.00e-74 269.00
IUUC-Ogu-078513 Oryza glumaepatula 51.01 4.00e-74 269.00
IUUC-Oin-079094 Oryza indica 51.01 4.00e-74 269.00
IUUC-Olo-080473 Oryza longistaminata 51.01 4.00e-74 269.00
IUUC-Ome-081643 Oryza meridionalis 51.01 4.00e-74 269.00
IUUC-Oni-082589 Oryza nivara 51.01 4.00e-74 269.00
IUUC-Opu-083677 Oryza punctata 51.35 1.00e-74 271.00
IUUC-Oru-084537 Oryza rufipogon 51.01 4.00e-74 269.00
IUUC-Osa-085449 Oryza sativa 51.01 4.00e-74 269.00
IUUC-Ola-087226 Oryzias latipes 50.33 1.00e-80 291.00
IUUC-Olu-087893 Ostreococcus lucimarinus 47.74 8.00e-62 228.00
IUUC-Oga-088837 Otolemur garnettii 49.34 6.00e-79 285.00
IUUC-Oar-089594 Ovis aries 49.67 1.00e-78 284.00
IUUC-Ptr-091132 Pan troglodytes 50.33 5.00e-80 289.00
IUUC-Pan-092013 Papio anubis 29.28 2.00e-23 100.00
IUUC-Psi-093568 Pelodiscus sinensis 52.07 4.00e-80 289.00
IUUC-Pma-094756 Petromyzon marinus 64.44 8.00e-33 130.00
IUUC-Ppa-095835 Physcomitrella patens 51.19 2.00e-71 260.00
IUUC-Pfo-096063 Poecilia formosa 50.99 5.00e-81 292.00
IUUC-Pab-098674 Pongo abelii 50.00 2.00e-79 287.00
IUUC-Pop-099402 Populus trichocarpa 49.31 7.00e-69 251.00
IUUC-Pca-100824 Procavia capensis 38.21 1.00e-53 201.00
IUUC-Ppe-101278 Prunus persica 50.00 1.00e-69 254.00
IUUC-Pva-103161 Pteropus vampyrus 46.69 4.00e-73 266.00
IUUC-Pgr-103573 Puccinia graminis 50.64 1.00e-83 301.00
IUUC-Ptt-103700 Puccinia triticina 51.29 8.00e-81 291.00
IUUC-Pte-104267 Pyrenophora teres 86.24 3.00e-149 519.00
IUUC-Pyt-104535 Pyrenophora triticirepentis 86.49 1.00e-140 490.00
IUUC-Rno-104833 Rattus norvegicus 49.34 6.00e-79 285.00
IUUC-Sce-106437 Saccharomyces cerevisiae 57.82 3.00e-87 313.00
IUUC-Sha-106611 Sarcophilus harrisii 50.66 2.00e-80 290.00
IUUC-Sja-107654 Schizosaccharomyces japonicus 53.72 3.00e-86 309.00
IUUC-Spo-108362 Schizosaccharomyces pombe 55.36 1.00e-84 303.00
IUUC-Smo-108797 Selaginella moellendorffii 49.67 4.00e-71 259.00
IUUC-Sit-110132 Setaria italica 51.35 1.00e-74 270.00
IUUC-Sly-111852 Solanum lycopersicum 48.64 2.00e-68 250.00
IUUC-Stu-112195 Solanum tuberosum 48.98 9.00e-69 251.00
IUUC-Sar-113279 Sorex araneus 28.47 3.00e-21 94.40
IUUC-Sbi-114229 Sorghum bicolor 52.70 1.00e-76 277.00
IUUC-Sre-114898 Sporisorium reilianum 47.55 1.00e-79 288.00
IUUC-Ssc-115995 Sus scrofa 56.92 8.00e-43 164.00
IUUC-Tgu-116793 Taeniopygia guttata 50.00 3.00e-74 270.00
IUUC-Tru-117797 Takifugu rubripes 49.67 2.00e-80 290.00
IUUC-Tsy-118913 Tarsius syrichta 28.32 2.00e-19 88.60
IUUC-Tni-120366 Tetraodon nigroviridis 50.00 7.00e-81 291.00
IUUC-Tca-121068 Theobroma cacao 49.65 1.00e-68 251.00
IUUC-Tre-121899 Trichoderma reesei 70.51 1.00e-116 410.00
IUUC-Tvi-122380 Trichoderma virens 71.09 5.00e-117 412.00
IUUC-Tae-124286 Triticum aestivum 52.03 4.00e-75 273.00
IUUC-Tur-126202 Triticum urartu 51.69 5.00e-75 272.00
IUUC-Tme-127181 Tuber melanosporum 58.12 2.00e-101 360.00
IUUC-Ttr-128448 Tursiops truncatus 49.80 5.00e-63 233.00
IUUC-Uma-129661 Ustilago maydis 47.81 3.00e-81 293.00
IUUC-Vda-129666 Verticillium dahliae 70.38 1.00e-110 390.00
IUUC-Vpa-130318 Vicugna pacos 49.34 1.00e-78 285.00
IUUC-Vvi-130868 Vitis vinifera 50.52 9.00e-71 258.00
IUUC-Xtr-131859 Xenopus tropicalis 50.66 4.00e-81 292.00
IUUC-Xma-133898 Xiphophorus maculatus 51.32 7.00e-82 295.00
IUUC-Yli-134559 Yarrowia lipolytica 58.42 8.00e-93 331.00
Created Date 25-Jun-2017

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