iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-027473

Ensembl Protein ID

ENSDARP00000059751.4

UniProt Accession

E7F602; E7F602_DANRE

Genbank Protein ID

ENSDARP00000059751

Protein Name

Mediator complex subunit 16

Genbank Nucleotide ID

BX000430

Gene Name

med16; lppr3b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000040779.5	ENSDART00000059752.5	ENSDARP00000059751.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-06	28.2	84	117

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrt 32
           gH++ ++cl++  s+ +l+s+ +Dg+ik+W +++
   Q: 84   GHNEIISCLEWdqSGSRLLSADGDGQIKCWGMTE 117
           8**********965599*************9876 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MMDIAYVCEW EKRPKSNHCP SIPLVCAWSC RNLIAFTTDL KNEEDDKGLD NAFITNITTP 60
VDLSHMIHII DTDHPWDVYS INSGHNEIIS CLEWDQSGSR LLSADGDGQI KCWGMTEHLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGCTCCAG CCCAATAGGG GGTGGTAAGT ATTAGATGAG TCTTTGAATC CGGAAAGAGT 60
CGACGAATAC AGGCGCTCAA TGATGTGATG TGCAGCTTCA AAGTGCTATT TGCTGAATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR021665--Mediator_Med16
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF11635--Med16

SMART

SM00320--WD40

Gene Ontology

GO:0016592--C:mediator complex
GO:0003713--F:transcription coactivator activity
GO:0045893--P:positive regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011407	Astyanax mexicanus	85.16	0.00e+00	1414.00
IUUC-Bta-012729	Bos taurus	74.26	0.00e+00	1257.00
IUUC-Cja-019000	Callithrix jacchus	72.64	6.00e-78	283.00
IUUC-Cfa-020876	Canis familiaris	75.56	0.00e+00	1303.00
IUUC-Cpo-021655	Cavia porcellus	74.38	0.00e+00	1268.00
IUUC-Dno-029564	Dasypus novemcinctus	76.30	0.00e+00	904.00
IUUC-Eca-033914	Equus caballus	76.88	0.00e+00	768.00
IUUC-Fca-036338	Felis catus	76.51	0.00e+00	717.00
IUUC-Fal-037249	Ficedula albicollis	77.92	0.00e+00	1372.00
IUUC-Gmo-039447	Gadus morhua	67.61	0.00e+00	665.00
IUUC-Gga-041100	Gallus gallus	78.53	0.00e+00	1279.00
IUUC-Gac-042603	Gasterosteus aculeatus	81.62	1.00e-178	620.00
IUUC-Ggo-044794	Gorilla gorilla	76.64	0.00e+00	977.00
IUUC-Hsa-045722	Homo sapiens	75.43	0.00e+00	703.00
IUUC-Itr-048948	Ictidomys tridecemlineatus	75.21	0.00e+00	1283.00
IUUC-Loc-052871	Lepisosteus oculatus	88.92	0.00e+00	1494.00
IUUC-Mcc-055201	Macaca mulatta	76.58	0.00e+00	979.00
IUUC-Mga-059807	Meleagris gallopavo	73.54	0.00e+00	1245.00
IUUC-Mmr-060781	Microcebus murinus	73.81	0.00e+00	1287.00
IUUC-Mpu-066388	Mustela putorius furo	75.33	0.00e+00	1292.00
IUUC-Ont-072316	Oreochromis niloticus	86.07	0.00e+00	1432.00
IUUC-Ola-086721	Oryzias latipes	84.06	0.00e+00	1376.00
IUUC-Oga-088875	Otolemur garnettii	75.69	0.00e+00	1283.00
IUUC-Oar-090444	Ovis aries	75.33	0.00e+00	1281.00
IUUC-Ptr-091117	Pan troglodytes	76.21	0.00e+00	691.00
IUUC-Pan-091807	Papio anubis	74.69	0.00e+00	1207.00
IUUC-Pfo-097356	Poecilia formosa	85.01	0.00e+00	1421.00
IUUC-Pab-097953	Pongo abelii	75.58	0.00e+00	941.00
IUUC-Pca-100896	Procavia capensis	74.82	0.00e+00	1261.00
IUUC-Rno-105038	Rattus norvegicus	74.65	0.00e+00	1290.00
IUUC-Tgu-116750	Taeniopygia guttata	77.57	0.00e+00	1363.00
IUUC-Tru-118405	Takifugu rubripes	85.29	0.00e+00	1453.00
IUUC-Tni-120217	Tetraodon nigroviridis	87.56	0.00e+00	1107.00
IUUC-Ttr-129222	Tursiops truncatus	74.79	0.00e+00	1259.00
IUUC-Xtr-132084	Xenopus tropicalis	76.53	0.00e+00	1253.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence