iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gga-040504

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AADN04000129

Gene Name

USP42

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000003378.5	ENSGALT00000005338.5	ENSGALP00000005328.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.10e-79	268.4	106	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgye 88
           +Gl NlgNtC++NS+LQcL+ +p+l++++l+ ++++++n +       ++++++++ ++ ++ + + a++p  +++ lk++ ++f+  +
   Q: 106  VGLFNLGNTCFINSALQCLTYTPPLANYMLSlEHTQSCNYQ-----GFCMMCTMETHINRVLCCAHDAIKPAFVVHELKRIGKHFRFGA 189
           69*****************************8899999876.....67***************************************** PP
   S: 89   qqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvp 177
           q+Da+Efl+f +d++++++          +        +     +  ++ +++i+++F+g l+s++kcl+c+ vs ++e fld++l+++
   Q: 190  QEDAHEFLRFTVDAMQQAC----------L--------HGCTILDRSSQATTIIHQIFGGFLRSRVKCLNCKAVSDTYEAFLDIPLDIK 260
           *******************..........2........2223446788999************************************** PP
   S: 178  gkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfct 266
             +     s++++Le+f+k+e+l+gen y+c+kckk + a+k++++++ ++vL++ LkRf    ++    kink+v++p+ Ldl+ +++
   Q: 261  TVS-----SVTKALEQFVKPEQLDGENCYKCSKCKKMVPASKRFTIHRSSNVLTISLKRF----ANFTGGKINKEVKYPEYLDLRAYMS 340
           *99.....9***************************************************....668889******************* PP
   S: 267  speekqkekkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           ++     e+ +Y L+av+vHsG +++ GHY++++k  +g W++++D +V +++ ++vl    ++aY+lfY r
   Q: 341  QSIG---EPLIYALYAVLVHSGvNSHAGHYFCFIKAADGLWYQMNDASVVQSNIKTVLG---QQAYLLFYIR 406
           9443...49**************************************************...********87 PP

Organism

Gallus gallus

Protein Sequence
(Fasta)

MTIVKPKSSK SKKSSSRRSG KSKKPSAKNM KSRTANWGRI PPAKDPNQVS VNQGRGGAIY 60
CRSSEKSKPF ALRDLVINDG IAPPQRILFP PEKICMDWQQ TQNVGVGLFN LGNTCFINSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTAAATA CGTTGTTGAA ACATTTTCCC TTTCAATCAG AAAAAAAGGA GATGTCACTG 60
GTATCTGCAG TTTGAAGACT GGATCTTATC TGAAAGTCAC TGAGCCCAGG CGCTGCCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00443--UCH

Gene Ontology

GO:0005634--C:nucleus
GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0016578--P:histone deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001055	Aegilops tauschii	39.44	2.00e-71	263.00
IUUC-Aml-002303	Ailuropoda melanoleuca	41.98	0.00e+00	666.00
IUUC-Apl-003459	Anas platyrhynchos	75.11	0.00e+00	1632.00
IUUC-Aca-004440	Anolis carolinensis	49.64	0.00e+00	918.00
IUUC-Ago-007836	Ashbya gossypii	26.50	3.00e-30	126.00
IUUC-Ame-011358	Astyanax mexicanus	64.27	6.00e-165	574.00
IUUC-Bta-012803	Bos taurus	42.90	0.00e+00	758.00
IUUC-Cja-019199	Callithrix jacchus	54.82	0.00e+00	705.00
IUUC-Cfa-020597	Canis familiaris	45.63	0.00e+00	818.00
IUUC-Cpo-021945	Cavia porcellus	42.45	0.00e+00	785.00
IUUC-Csa-023485	Chlorocebus sabaeus	55.29	0.00e+00	710.00
IUUC-Cho-024575	Choloepus hoffmanni	55.97	1.00e-158	553.00
IUUC-Dre-028442	Danio rerio	60.52	5.00e-164	572.00
IUUC-Dno-029673	Dasypus novemcinctus	45.30	0.00e+00	858.00
IUUC-Dme-032119	Drosophila melanogaster	36.32	5.00e-63	236.00
IUUC-Ete-033088	Echinops telfairi	68.09	8.00e-143	501.00
IUUC-Eca-033579	Equus caballus	57.80	0.00e+00	710.00
IUUC-Eeu-034511	Erinaceus europaeus	37.37	5.00e-91	329.00
IUUC-Fca-035792	Felis catus	55.42	0.00e+00	689.00
IUUC-Fal-037075	Ficedula albicollis	75.59	0.00e+00	1717.00
IUUC-Ggo-044798	Gorilla gorilla	52.87	0.00e+00	642.00
IUUC-Hsa-046072	Homo sapiens	55.59	0.00e+00	709.00
IUUC-Hvu-047620	Hordeum vulgare	43.26	8.00e-75	275.00
IUUC-Itr-048078	Ictidomys tridecemlineatus	43.82	0.00e+00	879.00
IUUC-Lch-049867	Latimeria chalumnae	41.74	0.00e+00	772.00
IUUC-Loc-052621	Lepisosteus oculatus	56.43	5.00e-160	558.00
IUUC-Laf-054330	Loxodonta africana	58.19	0.00e+00	732.00
IUUC-Mcc-054900	Macaca mulatta	63.85	2.00e-146	511.00
IUUC-Mga-059501	Meleagris gallopavo	81.25	0.00e+00	1882.00
IUUC-Mvi-060547	Microbotryum violaceum	44.71	8.00e-80	291.00
IUUC-Mmr-060864	Microcebus murinus	44.57	0.00e+00	853.00
IUUC-Mdo-062395	Monodelphis domestica	50.04	0.00e+00	1020.00
IUUC-Mmu-064236	Mus musculus	42.30	0.00e+00	748.00
IUUC-Mpu-065822	Mustela putorius furo	42.52	0.00e+00	811.00
IUUC-Mlu-067091	Myotis lucifugus	41.01	0.00e+00	731.00
IUUC-Nle-069004	Nomascus leucogenys	55.52	0.00e+00	711.00
IUUC-Opr-071170	Ochotona princeps	40.00	3.00e-165	576.00
IUUC-Ont-071832	Oreochromis niloticus	63.34	2.00e-156	546.00
IUUC-Oan-073711	Ornithorhynchus anatinus	49.19	0.00e+00	979.00
IUUC-Ocu-074596	Oryctolagus cuniculus	60.58	0.00e+00	636.00
IUUC-Olo-080250	Oryza longistaminata	41.74	5.00e-72	266.00
IUUC-Oga-088641	Otolemur garnettii	43.04	0.00e+00	822.00
IUUC-Oar-089760	Ovis aries	53.01	0.00e+00	661.00
IUUC-Ptr-091445	Pan troglodytes	55.44	0.00e+00	710.00
IUUC-Pan-092484	Papio anubis	55.82	0.00e+00	707.00
IUUC-Psi-093277	Pelodiscus sinensis	53.69	0.00e+00	1104.00
IUUC-Pfo-096469	Poecilia formosa	60.09	1.00e-157	550.00
IUUC-Pab-097794	Pongo abelii	55.82	0.00e+00	710.00
IUUC-Pva-103238	Pteropus vampyrus	38.02	0.00e+00	646.00
IUUC-Rno-105068	Rattus norvegicus	42.38	0.00e+00	791.00
IUUC-Sha-106713	Sarcophilus harrisii	49.63	0.00e+00	1012.00
IUUC-Sar-113340	Sorex araneus	53.05	0.00e+00	629.00
IUUC-Tgu-117149	Taeniopygia guttata	73.15	0.00e+00	1648.00
IUUC-Tru-117776	Takifugu rubripes	63.30	2.00e-154	539.00
IUUC-Tsy-118974	Tarsius syrichta	42.05	0.00e+00	805.00
IUUC-Tni-120774	Tetraodon nigroviridis	59.42	7.00e-151	526.00
IUUC-Ttr-128764	Tursiops truncatus	39.54	9.00e-174	604.00
IUUC-Xtr-132544	Xenopus tropicalis	52.57	5.00e-153	534.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence