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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-106119
UUCD1 version UUC-RaN-00192
Ensembl Protein ID ENSRNOP00000060639.1
UniProt Accession D3ZK73; D3ZK73_RAT
Genbank Protein ID EDM10867.1
Protein Name Cullin 4B; Cullin 4B (Predicted)
Genbank Nucleotide ID AABR07041266
Gene Name Cul4b; Cul4b_predicted; rCG_53225
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000002585.6 ENSRNOT00000065023.2 ENSRNOP00000060639.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IIDHINT
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/Cullin 1.40e-220 734.5 277 872
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/Cullin

   S: 1    klreavkkilrqesvkkeyeelytavynlclskvgaklYkklkevleefi.kqvkkkveesedeq.lLktynreWekfreqlkvlrkif 87
    kl+eav++i++++s+k+++eely+av+nlc++k++a+lYk+l++++e++i +q+++ +e+s d+ +Lk++ r+W+++++q+ ++r+if
   Q: 277 KLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIkAQIHQFREDSLDSVlFLKKIDRCWQNHCRQMIMIRSIF 365
    589***********************************************99************************************* PP
   S: 88 ayldrtyvkkskkvsevrkLaldlwrkeived..ikkrllelllklieaeRkgeavdrrllsgvveslveLslnklaiykesFEakfle 174
    ++ldrtyv +++++ ++++++l+l+r +i++d +++++++ +l lie+eR+gea+dr+ll+++ ++l++L +iy++sFE++fl+
   Q: 366 LFLDRTYVLQNSMLPSIWDMGLELFRAHIISDqkVQTKTIDGILLLIERERNGEAIDRSLLRSLLNMLSDL-----QIYQDSFEQRFLQ 449
    ********************************99*********************************9998.....9************ PP
   S: 175 atqefykaesaeflqenevdeYlkkvearlneeeeraaryleestetkLlevvekeliakhlesll.aelvallrdkktedlsrmykLl 262
    +t+++y+ae ++++qe+ev eYl++v++rl+ee +r+ +yl+++t+++L++ vek+l+ +hl+++l ++l++ll++++ +dls++y+L+
   Q: 450 ETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIASVEKQLLGEHLTAILqKGLNSLLDENRIQDLSLLYQLF 538
    ****************************************************************9989********************* PP
   S: 263 srvlngleellkeleshikeqgkaaltaeekekdpkkyVerllelknklqklvseaFnndakFlkaldkafetfvnknsvlkaaksp.E 350
    srv+ g++ ll+++ ++ik g+++++++ek+k+ +V++ll++k+k++++++++F +++kF++a+++afetf+nk+ +++p E
   Q: 539 SRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKT---MVQELLDFKDKVDHIIDTCFLKNEKFINAMKEAFETFINKR-----PNKPaE 619
    **********************************...*****************************************.....66666* PP
   S: 351 llAryiDqlLrksskglteeeleaqldkvllvfkyisekdvFekyYkkhLakRLlsgksasseaEesviekLkeecgaeftskLerMfq 439
    l+A+y+D++Lr+++k++t+eele++ldk++++f++i +kdvFe++Ykk+LakRLl+gksas +aE+s+++kLk+ecga+ftskLe+Mf+
   Q: 620 LIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFK 708
    ***************************************************************************************** PP
   S: 440 dlkvSedlnrqFkeekenteesesvelsvlvLsagaWptasetekvsLPaelektiekfeefYlekhsgRkLqWqhtlgraelkaelkk 528
    d+++S+d+++qFk+ ++n++ ++el+v++L++g+Wpt+ +e v+LP+e+ k++e+f++fYl khsgRkLqWq tlg++ lkae+k+
   Q: 709 DMELSKDIMIQFKQYMQNQNVPGNIELTVNILTMGYWPTYVPME-VHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKE 796
    ******************************************99.******************************************** PP
   S: 529 gkyelqVstfQmavLLafnnsekvsveelkkatelpeeeLrrtlqsLvsskkqvlkkepeskeieeedlfsvNqef 604
    gk+elqVs fQ++vLL+fn+ e++s+ee+k+at++++ eLrrtlqsL+++k++vl k+p++k+ie++d+f++N++f
   Q: 797 GKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDF 872
    **************************************************************************98 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSRSTKSRER RENDANSEDN SSETSNQERR RCLQGPPRPP YPPLLPPVFP PPTPPPQVRR 60
TRGLQDLGAM KSVCPGTSGF SSPNPSAASA AAQEVRSATD GNTSTTPPTS AKKRKLNSSS 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-106119|E3,Cullin|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CAGTTGATGG CAGACATCTT CGAGAAGGTC TTTGTGATCC TCGAGGTTTG AGAGCTTCGT 60
CGCATGAATA TTAGAACAAA ACTTTTGTTG ATCCTCCAGT GACTGTAAGT TAAAAAACCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-106119|E3,Cullin|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR016157--Cullin_CS
IPR016158--Cullin_homology
IPR001373--Cullin_N
IPR019559--Cullin_neddylation_domain
IPR016159--Cullin_repeat-like_dom
IPR011991--WHTH_DNA-bd_dom

PROSITE

PS01256--CULLIN_1
PS50069--CULLIN_2

Pfam

PF00888--Cullin
PF10557--Cullin_Nedd8

SMART

SM00182--CULLIN
SM00884--Cullin_Nedd8

Gene Ontology

GO:0031465--C:Cul4B-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0070062--C:extracellular exosome
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0031625--F:ubiquitin protein ligase binding
GO:0006974--P:cellular response to DNA damage stimulus
GO:0035518--P:histone H2A monoubiquitination
GO:0031175--P:neuron projection development
GO:1900087--P:positive regulation of G1/S transition of mitotic cell cycle
GO:0045732--P:positive regulation of protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0070914--P:UV-damage excision repair

KEGG rno:302502
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000285 Aegilops tauschii 57.46 0.00e+00 850.00
IUUC-Aml-002062 Ailuropoda melanoleuca 96.84 0.00e+00 1689.00
IUUC-Atr-002727 Amborella trichopoda 57.05 0.00e+00 828.00
IUUC-Apl-004157 Anas platyrhynchos 94.08 0.00e+00 1510.00
IUUC-Aca-004430 Anolis carolinensis 92.42 0.00e+00 1449.00
IUUC-Aly-006547 Arabidopsis lyrata 58.70 0.00e+00 830.00
IUUC-Ath-006748 Arabidopsis thaliana 56.82 0.00e+00 825.00
IUUC-Acl-008359 Aspergillus clavatus 36.89 2.00e-129 457.00
IUUC-Afl-008567 Aspergillus flavus 38.63 1.00e-140 494.00
IUUC-Afu-008833 Aspergillus fumigatus 38.66 3.00e-136 479.00
IUUC-Ani-009373 Aspergillus nidulans 39.35 1.00e-142 501.00
IUUC-Ang-009622 Aspergillus niger 39.31 8.00e-139 488.00
IUUC-Aor-010241 Aspergillus oryzae 38.49 1.00e-136 480.00
IUUC-Ate-010251 Aspergillus terreus 39.68 8.00e-144 504.00
IUUC-Ame-011580 Astyanax mexicanus 88.37 0.00e+00 1423.00
IUUC-Bgr-012219 Blumeria graminis 37.21 2.00e-120 426.00
IUUC-Bta-013244 Bos taurus 92.89 0.00e+00 1674.00
IUUC-Bci-013744 Botrytis cinerea 40.10 1.00e-133 470.00
IUUC-Bdi-014223 Brachypodium distachyon 55.47 0.00e+00 847.00
IUUC-Bol-016036 Brassica oleracea 57.93 0.00e+00 850.00
IUUC-Bra-017794 Brassica rapa 57.47 0.00e+00 852.00
IUUC-Cja-019180 Callithrix jacchus 97.50 0.00e+00 1662.00
IUUC-Cfa-021189 Canis familiaris 97.50 0.00e+00 1661.00
IUUC-Cpo-021928 Cavia porcellus 96.59 0.00e+00 1637.00
IUUC-Cre-022739 Chlamydomonas reinhardtii 46.35 7.00e-177 613.00
IUUC-Csa-023831 Chlorocebus sabaeus 97.23 0.00e+00 1675.00
IUUC-Cho-024959 Choloepus hoffmanni 93.28 0.00e+00 995.00
IUUC-Cin-025727 Ciona intestinalis 62.76 0.00e+00 766.00
IUUC-Csv-026117 Ciona savignyi 54.05 0.00e+00 875.00
IUUC-Cgl-026761 Colletotrichum gloeosporioides 39.85 2.00e-130 459.00
IUUC-Dre-027916 Danio rerio 88.18 0.00e+00 1420.00
IUUC-Dno-029483 Dasypus novemcinctus 88.77 0.00e+00 1541.00
IUUC-Dse-031159 Dothistroma septosporum 36.78 1.00e-129 457.00
IUUC-Dme-031652 Drosophila melanogaster 65.53 0.00e+00 971.00
IUUC-Ete-032775 Echinops telfairi 85.78 0.00e+00 1359.00
IUUC-Eca-033952 Equus caballus 93.70 0.00e+00 1643.00
IUUC-Eeu-034767 Erinaceus europaeus 89.49 0.00e+00 1463.00
IUUC-Fca-036211 Felis catus 97.32 0.00e+00 1498.00
IUUC-Fal-037248 Ficedula albicollis 94.64 0.00e+00 1508.00
IUUC-Fox-037854 Fusarium oxysporum 38.90 1.00e-127 450.00
IUUC-Fso-038138 Fusarium solani 39.25 2.00e-132 466.00
IUUC-Gmo-038754 Gadus morhua 87.53 0.00e+00 1405.00
IUUC-Ggr-040003 Gaeumannomyces graminis 36.96 1.00e-110 394.00
IUUC-Gga-041002 Gallus gallus 94.76 0.00e+00 1514.00
IUUC-Gac-041555 Gasterosteus aculeatus 85.30 0.00e+00 1404.00
IUUC-Gma-043960 Glycine max 59.52 0.00e+00 865.00
IUUC-Ggo-045468 Gorilla gorilla 97.53 0.00e+00 1597.00
IUUC-Hsa-046848 Homo sapiens 97.62 0.00e+00 1664.00
IUUC-Itr-048365 Ictidomys tridecemlineatus 95.65 0.00e+00 1672.00
IUUC-Lch-049858 Latimeria chalumnae 85.78 0.00e+00 1488.00
IUUC-Lpe-051446 Leersia perrieri 56.61 0.00e+00 843.00
IUUC-Loc-052415 Lepisosteus oculatus 86.64 0.00e+00 1434.00
IUUC-Lma-053080 Leptosphaeria maculans 36.85 1.00e-138 487.00
IUUC-Laf-053701 Loxodonta africana 94.23 0.00e+00 1673.00
IUUC-Mcc-055538 Macaca mulatta 95.57 0.00e+00 1617.00
IUUC-Mor-057102 Magnaporthe oryzae 36.59 5.00e-123 435.00
IUUC-Mpo-057342 Magnaporthe poae 37.48 1.00e-107 384.00
IUUC-Mtr-058660 Medicago truncatula 57.70 0.00e+00 853.00
IUUC-Mla-058936 Melampsora laricipopulina 40.06 5.00e-117 415.00
IUUC-Mga-059754 Meleagris gallopavo 94.65 0.00e+00 1506.00
IUUC-Mvi-060455 Microbotryum violaceum 42.63 1.00e-150 526.00
IUUC-Mmr-060870 Microcebus murinus 95.86 0.00e+00 1665.00
IUUC-Mdo-062015 Monodelphis domestica 91.34 0.00e+00 1471.00
IUUC-Mmu-063751 Mus musculus 97.94 0.00e+00 1669.00
IUUC-Mac-064443 Musa acuminata 57.10 0.00e+00 859.00
IUUC-Mpu-065903 Mustela putorius furo 96.73 0.00e+00 1693.00
IUUC-Mlu-068213 Myotis lucifugus 97.16 0.00e+00 1653.00
IUUC-Nfi-068363 Neosartorya fischeri 39.15 1.00e-138 487.00
IUUC-Ncr-068950 Neurospora crassa 35.99 4.00e-123 436.00
IUUC-Nle-069480 Nomascus leucogenys 97.23 0.00e+00 1675.00
IUUC-Opr-071164 Ochotona princeps 88.12 5.00e-175 607.00
IUUC-Ont-071562 Oreochromis niloticus 81.83 0.00e+00 1264.00
IUUC-Oan-073607 Ornithorhynchus anatinus 94.15 0.00e+00 1491.00
IUUC-Ocu-074446 Oryctolagus cuniculus 95.47 0.00e+00 1694.00
IUUC-Oba-075198 Oryza barthii 56.89 0.00e+00 847.00
IUUC-Obr-076095 Oryza brachyantha 56.89 0.00e+00 848.00
IUUC-Ogl-077032 Oryza glaberrima 56.89 0.00e+00 847.00
IUUC-Ogu-078051 Oryza glumaepatula 57.32 0.00e+00 847.00
IUUC-Oin-079399 Oryza indica 60.24 0.00e+00 743.00
IUUC-Olo-080988 Oryza longistaminata 56.05 0.00e+00 838.00
IUUC-Ome-081600 Oryza meridionalis 56.05 0.00e+00 838.00
IUUC-Oni-082623 Oryza nivara 56.19 0.00e+00 839.00
IUUC-Opu-083762 Oryza punctata 55.93 0.00e+00 840.00
IUUC-Oru-084499 Oryza rufipogon 56.89 0.00e+00 847.00
IUUC-Ola-087157 Oryzias latipes 87.31 0.00e+00 1399.00
IUUC-Olu-087650 Ostreococcus lucimarinus 48.15 0.00e+00 640.00
IUUC-Oga-088416 Otolemur garnettii 94.08 0.00e+00 1579.00
IUUC-Oar-090230 Ovis aries 96.37 0.00e+00 1635.00
IUUC-Ptr-091153 Pan troglodytes 97.99 0.00e+00 1623.00
IUUC-Pan-091729 Papio anubis 97.23 0.00e+00 1675.00
IUUC-Psi-093773 Pelodiscus sinensis 94.05 0.00e+00 1503.00
IUUC-Pma-094678 Petromyzon marinus 84.56 0.00e+00 1056.00
IUUC-Pno-094946 Phaeosphaeria nodorum 35.88 5.00e-116 412.00
IUUC-Ppa-095688 Physcomitrella patens 59.52 0.00e+00 907.00
IUUC-Pfo-096828 Poecilia formosa 88.15 0.00e+00 1414.00
IUUC-Pab-097816 Pongo abelii 89.67 0.00e+00 1482.00
IUUC-Pca-100858 Procavia capensis 76.42 0.00e+00 1203.00
IUUC-Ppe-101142 Prunus persica 59.67 0.00e+00 865.00
IUUC-Pva-102995 Pteropus vampyrus 90.34 0.00e+00 1528.00
IUUC-Pgr-103334 Puccinia graminis 37.66 1.00e-108 387.00
IUUC-Pte-104167 Pyrenophora teres 37.04 2.00e-139 489.00
IUUC-Pyt-104736 Pyrenophora triticirepentis 36.84 2.00e-137 483.00
IUUC-Sha-106958 Sarcophilus harrisii 85.03 0.00e+00 1493.00
IUUC-Sja-107940 Schizosaccharomyces japonicus 34.48 2.00e-116 412.00
IUUC-Spo-108109 Schizosaccharomyces pombe 34.18 5.00e-115 408.00
IUUC-Ssl-108537 Sclerotinia sclerotiorum 39.46 1.00e-132 467.00
IUUC-Smo-108872 Selaginella moellendorffii 59.87 0.00e+00 929.00
IUUC-Sit-110626 Setaria italica 57.75 0.00e+00 848.00
IUUC-Sly-111497 Solanum lycopersicum 59.94 0.00e+00 872.00
IUUC-Sar-113581 Sorex araneus 84.79 0.00e+00 1041.00
IUUC-Sbi-113931 Sorghum bicolor 57.75 0.00e+00 849.00
IUUC-Sre-114943 Sporisorium reilianum 39.61 2.00e-131 463.00
IUUC-Tgu-116462 Taeniopygia guttata 94.26 0.00e+00 1498.00
IUUC-Tru-118299 Takifugu rubripes 88.01 0.00e+00 1416.00
IUUC-Tsy-119517 Tarsius syrichta 100.00 0.00e+00 727.00
IUUC-Tni-120811 Tetraodon nigroviridis 86.76 0.00e+00 1392.00
IUUC-Tca-121626 Theobroma cacao 59.12 0.00e+00 859.00
IUUC-Tre-121907 Trichoderma reesei 39.48 2.00e-130 460.00
IUUC-Tvi-122568 Trichoderma virens 39.23 6.00e-130 458.00
IUUC-Tae-123442 Triticum aestivum 57.46 0.00e+00 850.00
IUUC-Tur-126032 Triticum urartu 57.46 0.00e+00 848.00
IUUC-Tme-127162 Tuber melanosporum 41.46 1.00e-144 506.00
IUUC-Tbe-127658 Tupaia belangeri 93.43 0.00e+00 1546.00
IUUC-Ttr-129112 Tursiops truncatus 89.78 0.00e+00 1485.00
IUUC-Uma-129531 Ustilago maydis 37.79 4.00e-113 402.00
IUUC-Vda-129701 Verticillium dahliae 39.41 1.00e-139 490.00
IUUC-Vpa-130217 Vicugna pacos 89.23 0.00e+00 1471.00
IUUC-Vvi-131133 Vitis vinifera 59.19 0.00e+00 870.00
IUUC-Xtr-132724 Xenopus tropicalis 91.03 0.00e+00 1456.00
IUUC-Xma-134149 Xiphophorus maculatus 88.39 0.00e+00 1426.00
IUUC-Zma-135529 Zea mays 56.83 0.00e+00 850.00
Created Date 25-Jun-2017

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