iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107766

Ensembl Protein ID

EEB07658

UniProt Accession

B6K137; B6K137_SCHJY

Genbank Protein ID

EEB07658.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

KE651166

Gene Name

YTM1; SJAG_02759

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_02759	EEB07658	EEB07658

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-25	84.9	265	301

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+++vt++ f +d     s s D+tik WDl tg l
   Q: 265  GHNGPVTDMVFaTDtSVAYSVSQDHTIKTWDLITGQL 301
           8***********885667*************998876 PP

Organism

Schizosaccharomyces japonicus

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSSQDEQVAQ VQVRFTTRDP DYAVADTPIL IPTTLRRYGL SQIVNHLLEK ETPTPFDFLV 60
NGKILTTSLD EYIVQNGLST ESVLTLEYIP STLPPSFLAA FPHEDWISGI SLKDDSILTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCAGTC AGGACGAGCA AGTAGCACAG GTTCAAGTGC GTTTTACTAC TCGCGATCCT 60
GATTATGCAG TAGCAGATAC GCCTATTCTC ATTCCTACGA CGCTTAGACG TTATGGTTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	28.22	5.00e-41	159.00
IUUC-Aml-001997	Ailuropoda melanoleuca	31.88	1.00e-42	165.00
IUUC-Atr-002544	Amborella trichopoda	26.79	1.00e-36	145.00
IUUC-Apl-003981	Anas platyrhynchos	31.12	2.00e-41	160.00
IUUC-Aca-004370	Anolis carolinensis	31.65	5.00e-54	202.00
IUUC-Aly-006455	Arabidopsis lyrata	26.10	6.00e-39	152.00
IUUC-Ath-006669	Arabidopsis thaliana	26.79	3.00e-35	140.00
IUUC-Ago-007864	Ashbya gossypii	41.31	7.00e-92	328.00
IUUC-Acl-008177	Aspergillus clavatus	36.73	5.00e-79	286.00
IUUC-Afl-008617	Aspergillus flavus	35.38	3.00e-75	273.00
IUUC-Afu-008752	Aspergillus fumigatus	36.65	2.00e-74	271.00
IUUC-Ani-009136	Aspergillus nidulans	39.14	3.00e-81	293.00
IUUC-Ang-009701	Aspergillus niger	34.90	1.00e-71	261.00
IUUC-Aor-009884	Aspergillus oryzae	35.59	6.00e-76	276.00
IUUC-Ate-010472	Aspergillus terreus	34.39	3.00e-39	153.00
IUUC-Ame-011432	Astyanax mexicanus	32.58	1.00e-54	204.00
IUUC-Bgr-012218	Blumeria graminis	35.81	4.00e-73	266.00
IUUC-Bta-012829	Bos taurus	32.24	5.00e-47	179.00
IUUC-Bci-013953	Botrytis cinerea	36.42	1.00e-79	288.00
IUUC-Bdi-014351	Brachypodium distachyon	29.50	4.00e-38	150.00
IUUC-Bol-016190	Brassica oleracea	28.22	2.00e-35	140.00
IUUC-Bra-016988	Brassica rapa	26.42	1.00e-35	142.00
IUUC-Cel-018569	Caenorhabditis elegans	24.83	8.00e-19	85.90
IUUC-Cja-019468	Callithrix jacchus	32.24	2.00e-47	181.00
IUUC-Cfa-020471	Canis familiaris	30.37	2.00e-45	174.00
IUUC-Cpo-022260	Cavia porcellus	31.78	1.00e-45	175.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	30.38	5.00e-45	172.00
IUUC-Csa-023989	Chlorocebus sabaeus	32.01	1.00e-45	174.00
IUUC-Cho-024426	Choloepus hoffmanni	30.84	6.00e-30	122.00
IUUC-Cin-025789	Ciona intestinalis	26.65	6.00e-37	146.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	42.63	4.00e-25	105.00
IUUC-Cne-027063	Cryptococcus neoformans	26.03	3.00e-29	120.00
IUUC-Dre-027907	Danio rerio	32.95	3.00e-57	213.00
IUUC-Dno-029225	Dasypus novemcinctus	32.24	2.00e-47	181.00
IUUC-Dor-031082	Dipodomys ordii	32.41	5.00e-23	99.80
IUUC-Dse-031308	Dothistroma septosporum	34.97	3.00e-77	280.00
IUUC-Dme-032189	Drosophila melanogaster	27.07	8.00e-40	155.00
IUUC-Ete-032247	Echinops telfairi	31.07	2.00e-41	161.00
IUUC-Eca-034285	Equus caballus	31.78	2.00e-46	177.00
IUUC-Eeu-035322	Erinaceus europaeus	29.22	3.00e-37	147.00
IUUC-Fca-036114	Felis catus	31.78	3.00e-46	176.00
IUUC-Fal-036891	Ficedula albicollis	30.26	1.00e-36	145.00
IUUC-Fox-037965	Fusarium oxysporum	35.18	2.00e-74	271.00
IUUC-Fso-038244	Fusarium solani	34.88	1.00e-73	268.00
IUUC-Gmo-039040	Gadus morhua	32.01	8.00e-56	208.00
IUUC-Ggr-040093	Gaeumannomyces graminis	31.31	2.00e-54	204.00
IUUC-Gga-040610	Gallus gallus	30.73	2.00e-48	184.00
IUUC-Gac-042117	Gasterosteus aculeatus	33.03	5.00e-56	209.00
IUUC-Gma-043756	Glycine max	28.38	1.00e-39	155.00
IUUC-Ggo-045179	Gorilla gorilla	32.48	2.00e-47	181.00
IUUC-Hsa-046114	Homo sapiens	32.48	9.00e-47	179.00
IUUC-Hvu-047331	Hordeum vulgare	29.81	5.00e-34	136.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	32.24	8.00e-47	179.00
IUUC-Kpa-049304	Komagataella pastoris	40.80	1.00e-90	324.00
IUUC-Lch-050655	Latimeria chalumnae	32.66	7.00e-39	152.00
IUUC-Lpe-051675	Leersia perrieri	29.05	2.00e-41	161.00
IUUC-Loc-052868	Lepisosteus oculatus	32.63	2.00e-56	211.00
IUUC-Lma-053258	Leptosphaeria maculans	35.81	5.00e-78	284.00
IUUC-Laf-053993	Loxodonta africana	30.84	5.00e-47	179.00
IUUC-Mcc-055128	Macaca mulatta	29.01	5.00e-31	126.00
IUUC-Meu-056501	Macropus eugenii	32.04	8.00e-37	145.00
IUUC-Mor-057114	Magnaporthe oryzae	34.57	2.00e-70	257.00
IUUC-Mpo-057463	Magnaporthe poae	39.62	5.00e-31	125.00
IUUC-Mtr-058367	Medicago truncatula	27.27	6.00e-36	142.00
IUUC-Mla-059107	Melampsora laricipopulina	29.59	5.00e-45	173.00
IUUC-Mga-059745	Meleagris gallopavo	29.80	4.00e-43	166.00
IUUC-Mvi-060362	Microbotryum violaceum	47.41	2.00e-28	118.00
IUUC-Mdo-062257	Monodelphis domestica	31.54	2.00e-50	191.00
IUUC-Mmu-063546	Mus musculus	31.78	2.00e-46	177.00
IUUC-Mac-065540	Musa acuminata	29.45	2.00e-42	164.00
IUUC-Mpu-066284	Mustela putorius furo	32.01	3.00e-46	177.00
IUUC-Mlu-067241	Myotis lucifugus	30.61	1.00e-46	178.00
IUUC-Nfi-068260	Neosartorya fischeri	36.86	2.00e-76	277.00
IUUC-Ncr-068719	Neurospora crassa	34.15	6.00e-65	239.00
IUUC-Nle-068981	Nomascus leucogenys	32.24	7.00e-47	179.00
IUUC-Opr-071218	Ochotona princeps	31.72	2.00e-45	174.00
IUUC-Ont-071646	Oreochromis niloticus	32.56	2.00e-52	197.00
IUUC-Oan-073453	Ornithorhynchus anatinus	32.24	5.00e-56	209.00
IUUC-Ocu-074008	Oryctolagus cuniculus	32.48	3.00e-48	183.00
IUUC-Oba-075712	Oryza barthii	26.91	2.00e-28	118.00
IUUC-Obr-076721	Oryza brachyantha	28.38	6.00e-41	159.00
IUUC-Ogl-077229	Oryza glaberrima	28.18	3.00e-41	160.00
IUUC-Ogu-078977	Oryza glumaepatula	26.91	1.00e-28	119.00
IUUC-Oin-079683	Oryza indica	28.86	4.00e-42	163.00
IUUC-Olo-080291	Oryza longistaminata	27.85	6.00e-23	99.00
IUUC-Ome-081834	Oryza meridionalis	29.50	1.00e-41	162.00
IUUC-Oni-082507	Oryza nivara	28.76	5.00e-36	143.00
IUUC-Opu-083396	Oryza punctata	28.89	1.00e-40	159.00
IUUC-Oru-085220	Oryza rufipogon	28.76	3.00e-36	144.00
IUUC-Osa-085767	Oryza sativa	28.86	4.00e-42	163.00
IUUC-Ola-087420	Oryzias latipes	32.71	1.00e-57	215.00
IUUC-Olu-087740	Ostreococcus lucimarinus	29.66	6.00e-42	162.00
IUUC-Oga-088264	Otolemur garnettii	30.84	7.00e-46	176.00
IUUC-Oar-089335	Ovis aries	31.07	4.00e-46	176.00
IUUC-Ptr-091320	Pan troglodytes	32.48	9.00e-47	179.00
IUUC-Pan-092833	Papio anubis	32.01	8.00e-46	175.00
IUUC-Psi-093504	Pelodiscus sinensis	32.01	6.00e-45	172.00
IUUC-Pma-094189	Petromyzon marinus	28.77	1.00e-44	172.00
IUUC-Pno-094929	Phaeosphaeria nodorum	34.89	5.00e-73	266.00
IUUC-Ppa-095429	Physcomitrella patens	32.35	4.00e-50	189.00
IUUC-Pfo-096337	Poecilia formosa	32.48	2.00e-57	214.00
IUUC-Pab-097571	Pongo abelii	32.24	1.00e-46	177.00
IUUC-Pop-099977	Populus trichocarpa	27.44	2.00e-38	150.00
IUUC-Pca-100394	Procavia capensis	28.50	2.00e-35	140.00
IUUC-Ppe-101848	Prunus persica	26.67	5.00e-38	149.00
IUUC-Pva-102921	Pteropus vampyrus	33.20	2.00e-22	98.20
IUUC-Pgr-103637	Puccinia graminis	30.29	6.00e-51	192.00
IUUC-Ptt-103781	Puccinia triticina	31.13	2.00e-51	194.00
IUUC-Pte-104135	Pyrenophora teres	37.10	2.00e-73	269.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	37.26	1.00e-76	278.00
IUUC-Rno-105114	Rattus norvegicus	32.48	5.00e-47	179.00
IUUC-Sce-106401	Saccharomyces cerevisiae	40.43	5.00e-93	332.00
IUUC-Sha-107122	Sarcophilus harrisii	32.09	4.00e-49	186.00
IUUC-Spo-108134	Schizosaccharomyces pombe	60.55	1.00e-153	533.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	38.03	9.00e-82	295.00
IUUC-Smo-108761	Selaginella moellendorffii	29.80	2.00e-42	164.00
IUUC-Sit-110354	Setaria italica	29.22	4.00e-40	156.00
IUUC-Sly-111023	Solanum lycopersicum	26.39	1.00e-37	148.00
IUUC-Stu-112778	Solanum tuberosum	26.97	3.00e-39	154.00
IUUC-Sar-113596	Sorex araneus	29.24	2.00e-24	104.00
IUUC-Sbi-114193	Sorghum bicolor	28.16	3.00e-35	140.00
IUUC-Sre-115002	Sporisorium reilianum	27.73	3.00e-34	137.00
IUUC-Ssc-116066	Sus scrofa	32.01	1.00e-46	178.00
IUUC-Tgu-117048	Taeniopygia guttata	30.99	3.00e-41	160.00
IUUC-Tni-119820	Tetraodon nigroviridis	33.02	4.00e-53	199.00
IUUC-Tca-121605	Theobroma cacao	28.24	7.00e-44	169.00
IUUC-Tre-121947	Trichoderma reesei	35.82	2.00e-76	277.00
IUUC-Tvi-122481	Trichoderma virens	35.37	4.00e-74	270.00
IUUC-Tae-125861	Triticum aestivum	28.73	8.00e-42	162.00
IUUC-Tur-126586	Triticum urartu	27.12	2.00e-35	140.00
IUUC-Tme-126900	Tuber melanosporum	44.47	3.00e-103	366.00
IUUC-Tbe-127736	Tupaia belangeri	27.65	9.00e-23	99.00
IUUC-Ttr-129041	Tursiops truncatus	27.65	6.00e-34	136.00
IUUC-Uma-129628	Ustilago maydis	28.60	2.00e-25	108.00
IUUC-Vpa-130260	Vicugna pacos	32.01	6.00e-47	179.00
IUUC-Vvi-131009	Vitis vinifera	26.35	8.00e-41	159.00
IUUC-Xtr-132083	Xenopus tropicalis	31.78	3.00e-51	193.00
IUUC-Xma-133094	Xiphophorus maculatus	32.01	6.00e-56	209.00
IUUC-Yli-134531	Yarrowia lipolytica	33.01	1.00e-63	235.00
IUUC-Zma-135509	Zea mays	27.90	2.00e-36	144.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence