iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114558

UUCD1 version

UUC-SoB-00001

Ensembl Protein ID

Sb04g030840.1

UniProt Accession

A0A194YRX0; A0A194YRX0_SORBI

Genbank Protein ID

KXG30937.1; KXG30938.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763; CM000763

Gene Name

SORBI_004G270800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g030840	Sb04g030840.1	Sb04g030840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.80e-24	83.2	275	306
E3 adaptor/Cullin RING/APC_C/CDC20	3.30e-124	414.9	140	449

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDl 30
           gH+ +v++l++  s+  l+sG++D+ +++WD+
   Q: 275  GHSQEVCGLKWsgSGQQLASGGNDNLLHIWDV 306
           8**********976699**************8 PP

E3 adaptor/Cullin RING/APC_C/CDC20

   S: 2    ekvldapelrddfylnLldWssknvlavaLgssvylwsaktgdvskladl.eekdlvtsvswieegtllavGtkkgeveiyDveekkkvrtl.tgh 95
           e+ ldapel dd+ylnLldW+s+nvl++aLg ++ylw+a++g+ s+l  + e++  +tsvsw ++g ++avG +++ v+++D+++++ +rtl   h
   Q: 140  ERTLDAPELVDDYYLNLLDWGSNNVLSIALGDTLYLWDASSGSTSELVTIdEDSGPITSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTLrGVH 235
           689***********************************************777889************************************5559 PP
   S: 96   sarvgaLsWnaevlssGsrdgeilhrdvrvkelklstlqahaqevCGlkwnedaklLasGGnDnsvsvwdassse.........Plkkfkehkaav 182
            arvg+L+Wn+ +l++G+ dg+i+ +dvr++++ ++t+++h+qevCGlkw+ ++++LasGGnDn +++wd s  +          l++ ++h+aav
   Q: 236  EARVGSLAWNNSILTTGGMDGKIVNNDVRIRDHVVQTYEGHSQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASsmpsagrnqWLHRLEDHTAAV 331
           9*********************************************************************98777676666666688999****** PP
   S: 183  kaiawsPwqkslLasGGGtaDrcikfwntltgalleeidtgsqvcsllwskkskelvsthGfaenkitlwkypslskvaelkgheaRvlslalspd 278
           ka+aw+P+q++lLa+GGG +Drcikfwnt tga+l+++dtgsqvc llw k+++el+s+hGf++n++tlwkyps+ k+ael+gh++Rvl +a spd
   Q: 332  KALAWCPFQSNLLATGGGGSDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLFMAQSPD 427
           ************************************************************************************************ PP
   S: 279  geaivtaagDetlrfwklfdkk 300
           g ++++aa+Detlrfw++f   
   Q: 428  GCTVASAAADETLRFWNVFGAP 449
           *******************765 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDAGSHSISS EKSRAAAAPR PPLQEAVSRP YMPSLGSGCR NPSAKCYGDR FIPDRSAMDM 60
DMAHFLLTEP RKDKENAAAS PSKEAYRRLL AEKLLNNRTR ILAFRNKPPE PENVSFADAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACGGGCTGG ACCGGAGCCG TCCACGCCGC CACGAGCCCA CGAGGGTAGA GCCTCGCACC 60
AGCCAGCCCT AGAGCCCGCA ACGGCTATTT TCTCCTACCC TGCCCTCCGG CGGCGGCTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR033010--Cdc20/Fizzy
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0097027--F:ubiquitin-protein transferase activator activity
GO:1904668--P:positive regulation of ubiquitin protein ligase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000974	Aegilops tauschii	89.69	0.00e+00	849.00
IUUC-Aml-001545	Ailuropoda melanoleuca	45.27	4.00e-105	374.00
IUUC-Apl-003255	Anas platyrhynchos	46.76	1.00e-109	389.00
IUUC-Aca-004920	Anolis carolinensis	47.00	2.00e-101	362.00
IUUC-Aly-006253	Arabidopsis lyrata	70.46	0.00e+00	664.00
IUUC-Ath-006795	Arabidopsis thaliana	70.68	0.00e+00	665.00
IUUC-Bta-012625	Bos taurus	45.71	3.00e-106	377.00
IUUC-Bdi-014344	Brachypodium distachyon	91.10	0.00e+00	894.00
IUUC-Bol-015368	Brassica oleracea	71.93	0.00e+00	664.00
IUUC-Bra-016738	Brassica rapa	71.43	0.00e+00	659.00
IUUC-Cja-019132	Callithrix jacchus	46.37	3.00e-108	384.00
IUUC-Cfa-020780	Canis familiaris	46.59	2.00e-107	381.00
IUUC-Cpo-022223	Cavia porcellus	45.58	6.00e-96	343.00
IUUC-Cre-022701	Chlamydomonas reinhardtii	52.26	4.00e-118	417.00
IUUC-Csa-023666	Chlorocebus sabaeus	45.93	8.00e-107	379.00
IUUC-Dno-028865	Dasypus novemcinctus	44.62	1.00e-103	369.00
IUUC-Dor-030958	Dipodomys ordii	45.13	3.00e-101	361.00
IUUC-Dse-031391	Dothistroma septosporum	49.20	5.00e-95	341.00
IUUC-Dme-031905	Drosophila melanogaster	46.98	5.00e-111	394.00
IUUC-Ete-032387	Echinops telfairi	42.04	1.00e-95	342.00
IUUC-Eeu-035059	Erinaceus europaeus	40.62	2.00e-87	315.00
IUUC-Fca-036346	Felis catus	44.31	4.00e-93	333.00
IUUC-Fal-037558	Ficedula albicollis	47.92	8.00e-108	383.00
IUUC-Gga-040790	Gallus gallus	47.37	2.00e-108	385.00
IUUC-Gac-041431	Gasterosteus aculeatus	42.30	2.00e-92	332.00
IUUC-Gma-043985	Glycine max	71.67	0.00e+00	636.00
IUUC-Ggo-045052	Gorilla gorilla	46.37	2.00e-107	382.00
IUUC-Hsa-046305	Homo sapiens	46.37	2.00e-107	382.00
IUUC-Hvu-047565	Hordeum vulgare	89.69	0.00e+00	852.00
IUUC-Itr-048461	Ictidomys tridecemlineatus	45.71	2.00e-96	345.00
IUUC-Lpe-050954	Leersia perrieri	93.21	0.00e+00	852.00
IUUC-Lma-052998	Leptosphaeria maculans	46.68	1.00e-93	336.00
IUUC-Laf-053742	Loxodonta africana	45.49	2.00e-105	375.00
IUUC-Mcc-054948	Macaca mulatta	45.93	8.00e-107	379.00
IUUC-Mtr-057725	Medicago truncatula	69.56	0.00e+00	627.00
IUUC-Mga-060102	Meleagris gallopavo	47.61	1.00e-108	385.00
IUUC-Mmr-061615	Microcebus murinus	46.15	5.00e-107	380.00
IUUC-Mmu-063864	Mus musculus	44.84	8.00e-100	356.00
IUUC-Mac-064861	Musa acuminata	81.90	0.00e+00	779.00
IUUC-Mpu-066502	Mustela putorius furo	48.17	4.00e-108	384.00
IUUC-Nle-070149	Nomascus leucogenys	45.93	2.00e-105	375.00
IUUC-Ont-071660	Oreochromis niloticus	44.79	3.00e-93	335.00
IUUC-Oan-073677	Ornithorhynchus anatinus	53.31	3.00e-97	348.00
IUUC-Ocu-073797	Oryctolagus cuniculus	45.93	1.00e-106	379.00
IUUC-Oba-075514	Oryza barthii	92.99	0.00e+00	865.00
IUUC-Obr-076018	Oryza brachyantha	89.01	0.00e+00	879.00
IUUC-Ogl-077254	Oryza glaberrima	93.21	0.00e+00	867.00
IUUC-Ogu-078562	Oryza glumaepatula	92.99	0.00e+00	865.00
IUUC-Oin-080094	Oryza indica	93.21	0.00e+00	867.00
IUUC-Olo-080449	Oryza longistaminata	92.99	0.00e+00	884.00
IUUC-Ome-081186	Oryza meridionalis	87.45	0.00e+00	865.00
IUUC-Oni-082243	Oryza nivara	93.21	0.00e+00	867.00
IUUC-Opu-084007	Oryza punctata	92.78	0.00e+00	860.00
IUUC-Oru-084357	Oryza rufipogon	92.99	0.00e+00	864.00
IUUC-Osa-086094	Oryza sativa	92.99	0.00e+00	865.00
IUUC-Ola-086907	Oryzias latipes	45.05	3.00e-94	338.00
IUUC-Olu-087647	Ostreococcus lucimarinus	55.36	2.00e-138	484.00
IUUC-Oga-088184	Otolemur garnettii	45.61	3.00e-103	368.00
IUUC-Oar-090023	Ovis aries	47.91	8.00e-103	366.00
IUUC-Ptr-090935	Pan troglodytes	48.66	1.00e-105	375.00
IUUC-Pan-091845	Papio anubis	45.93	8.00e-107	379.00
IUUC-Psi-093188	Pelodiscus sinensis	46.41	3.00e-107	381.00
IUUC-Pno-094809	Phaeosphaeria nodorum	46.60	1.00e-94	340.00
IUUC-Pab-098603	Pongo abelii	46.15	3.00e-107	381.00
IUUC-Pop-098890	Populus trichocarpa	70.76	0.00e+00	655.00
IUUC-Pca-101062	Procavia capensis	45.92	5.00e-107	380.00
IUUC-Ppe-101865	Prunus persica	76.94	0.00e+00	631.00
IUUC-Pva-102925	Pteropus vampyrus	46.15	3.00e-107	381.00
IUUC-Pte-104142	Pyrenophora teres	45.92	6.00e-94	337.00
IUUC-Pyt-104693	Pyrenophora triticirepentis	45.92	5.00e-94	337.00
IUUC-Rno-106005	Rattus norvegicus	44.84	3.00e-100	357.00
IUUC-Sha-107472	Sarcophilus harrisii	47.49	9.00e-104	369.00
IUUC-Smo-108922	Selaginella moellendorffii	60.59	4.00e-155	540.00
IUUC-Sit-110032	Setaria italica	95.78	0.00e+00	907.00
IUUC-Sly-111202	Solanum lycopersicum	73.21	0.00e+00	669.00
IUUC-Stu-112024	Solanum tuberosum	72.61	0.00e+00	680.00
IUUC-Sar-113092	Sorex araneus	43.30	4.00e-94	337.00
IUUC-Ssc-115710	Sus scrofa	45.93	1.00e-106	379.00
IUUC-Tgu-117100	Taeniopygia guttata	48.17	2.00e-108	385.00
IUUC-Tca-120949	Theobroma cacao	72.36	0.00e+00	682.00
IUUC-Tae-123918	Triticum aestivum	89.26	0.00e+00	874.00
IUUC-Tur-126193	Triticum urartu	90.09	0.00e+00	862.00
IUUC-Tbe-127384	Tupaia belangeri	51.36	9.00e-86	309.00
IUUC-Ttr-128511	Tursiops truncatus	45.93	2.00e-106	378.00
IUUC-Vpa-130775	Vicugna pacos	38.13	3.00e-53	201.00
IUUC-Vvi-131245	Vitis vinifera	77.00	0.00e+00	632.00
IUUC-Zma-135135	Zea mays	92.24	0.00e+00	893.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence