iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044333

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

CM000840

Gene Name

GLYMA_07G034700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA07G03890	GLYMA07G03890.1	GLYMA07G03890.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-35	121.2	184	224
UBD/Beta-Prp	9.30e-68	230.2	14	291

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 224
           999*****966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           +++++++v+ +p +++++++ ++gt+ +w+++++++ +s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d+++++++
   Q: 14   RSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107
           5678999*************************************************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngk 193
           +p+  +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v++++     +++
   Q: 108  HPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDyfTGGDKP 200
           *************************9999*********************************************98.*********6444555* PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgs 284
           +l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v+++ +l+ +++v++  +
   Q: 201  YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYD 291
           *******************************************************************************998888875443 PP

Organism

Glycine max

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLEIKRK LAQRSERVKS VDLHPTEPWI LASLYSGTVC IWNYQSQTMA KSFEVTELPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT LPYVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAATCCTAGA AGATCCCCAC AAGTACTAGC ATTCAAAACG ACAGCGCATT GGATATACGA 60
CAGAAGCCCC TCCCAGTGGC ATTACCGTAA ATCCGTGCCT TAACCGCAAC GCAGCATTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

gmx:100797508

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003976	Anas platyrhynchos	62.42	0.00e+00	1118.00
IUUC-Aca-004301	Anolis carolinensis	62.59	0.00e+00	1121.00
IUUC-Ago-007914	Ashbya gossypii	47.11	0.00e+00	726.00
IUUC-Acl-008237	Aspergillus clavatus	53.05	0.00e+00	911.00
IUUC-Afl-008535	Aspergillus flavus	51.88	0.00e+00	862.00
IUUC-Afu-008845	Aspergillus fumigatus	53.17	0.00e+00	900.00
IUUC-Ani-009135	Aspergillus nidulans	54.79	0.00e+00	890.00
IUUC-Ang-009654	Aspergillus niger	56.46	0.00e+00	824.00
IUUC-Aor-009939	Aspergillus oryzae	52.63	0.00e+00	922.00
IUUC-Ate-010355	Aspergillus terreus	52.91	0.00e+00	884.00
IUUC-Bgr-012249	Blumeria graminis	53.63	0.00e+00	897.00
IUUC-Bta-013579	Bos taurus	62.24	0.00e+00	970.00
IUUC-Bci-013866	Botrytis cinerea	53.67	0.00e+00	896.00
IUUC-Csa-023383	Chlorocebus sabaeus	66.14	0.00e+00	841.00
IUUC-Cho-024454	Choloepus hoffmanni	59.29	0.00e+00	928.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	49.88	0.00e+00	807.00
IUUC-Cne-026986	Cryptococcus neoformans	50.12	0.00e+00	875.00
IUUC-Cme-027219	Cyanidioschyzon merolae	51.75	0.00e+00	885.00
IUUC-Dse-031268	Dothistroma septosporum	52.80	0.00e+00	894.00
IUUC-Ete-033166	Echinops telfairi	58.93	0.00e+00	710.00
IUUC-Fal-037202	Ficedula albicollis	61.86	0.00e+00	1069.00
IUUC-Fox-037711	Fusarium oxysporum	54.35	0.00e+00	861.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.30	0.00e+00	884.00
IUUC-Gga-041112	Gallus gallus	62.83	0.00e+00	1123.00
IUUC-Gac-041733	Gasterosteus aculeatus	61.79	0.00e+00	1079.00
IUUC-Hvu-047669	Hordeum vulgare	91.24	0.00e+00	700.00
IUUC-Kpa-049265	Komagataella pastoris	51.66	0.00e+00	845.00
IUUC-Lma-053218	Leptosphaeria maculans	52.31	0.00e+00	873.00
IUUC-Mor-057264	Magnaporthe oryzae	53.58	0.00e+00	874.00
IUUC-Mpo-057538	Magnaporthe poae	53.06	0.00e+00	888.00
IUUC-Mla-058937	Melampsora laricipopulina	53.15	0.00e+00	893.00
IUUC-Mga-059875	Meleagris gallopavo	62.80	0.00e+00	1120.00
IUUC-Nfi-068277	Neosartorya fischeri	53.12	0.00e+00	890.00
IUUC-Ncr-068659	Neurospora crassa	52.86	0.00e+00	899.00
IUUC-Opr-070334	Ochotona princeps	63.09	0.00e+00	1006.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.96	0.00e+00	1156.00
IUUC-Pno-094785	Phaeosphaeria nodorum	59.45	6.00e-105	375.00
IUUC-Pgr-103453	Puccinia graminis	53.34	0.00e+00	905.00
IUUC-Ptt-103868	Puccinia triticina	53.71	0.00e+00	904.00
IUUC-Pte-104274	Pyrenophora teres	53.77	0.00e+00	907.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.98	0.00e+00	856.00
IUUC-Rno-105979	Rattus norvegicus	53.98	0.00e+00	819.00
IUUC-Smo-108695	Selaginella moellendorffii	81.50	0.00e+00	1414.00
IUUC-Sbi-113801	Sorghum bicolor	83.35	0.00e+00	1567.00
IUUC-Tgu-117239	Taeniopygia guttata	62.67	0.00e+00	1119.00
IUUC-Tni-120142	Tetraodon nigroviridis	62.23	0.00e+00	1107.00
IUUC-Tre-122072	Trichoderma reesei	53.04	0.00e+00	892.00
IUUC-Vda-129716	Verticillium dahliae	53.31	0.00e+00	905.00
IUUC-Zma-135867	Zea mays	83.79	0.00e+00	1587.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence