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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-105529
Ensembl Protein ID ENSRNOP00000026286.4
UniProt Accession D4A9M7; D4A9M7_RAT
Genbank Protein ID ENSRNOP00000026286
Protein Name Autophagy-related 16-like 2
Genbank Nucleotide ID AC128828
Gene Name Atg16l2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000019413.6 ENSRNOT00000026286.5 ENSRNOP00000026286.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.80e-28 96.7 339 374
UBD/Beta-Prp 1.00e-47 163.2 337 622
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
    H ++v++++f ++ ll++G+ D i++W++ g+l
   Q: 339 HLSEVNAVCFaPNsSLLATGGADRLIHLWNVVGGRL 374
    99*********7779***************987765 PP
   


   UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgh 93
    ++h s +++v+f+p++sllatg++d+ i +w+v g l ++l+g + +t+v+f+p+g+ + + +++++w + + tl+gh
   Q: 337 DAHLSEVNAVCFAPNSSLLATGGADRLIHLWNVVGGRLeaNQTLEGAGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKETLSGH 425
    789999********************************88899******************9999999********************* PP
   S: 94 edsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
    +d+v++ +f +++ v+Gs+drt++ wdl +c++ t ++ + c v + + +++sG++D+++r+Wd++ +++ +++
   Q: 426 KDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSR-TINVLS---YCNDVVCGDHIIISGHNDQKIRFWDSRGPHCIQVIP--VQGR 508
    ************************************9.666655...4555555556*************************5..589* PP
   S: 183 vyslsfdsngkelvsgsldgtvklwdlqtgec.....vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnss 266
    v+sl++++++ +l+s+s+d+t+k+ dl+ +++ + +++ +d++k fsp+ + ++gss g+++iWd+ +g+l ++lq+++ +
   Q: 509 VTSLNLSHDQLHLLSCSRDNTLKVIDLRISNIrqvfrADGFKCSSDWTK-AVFSPDRSYALVGSSNGTLYIWDVNTGKLETSLQGPHCT 596
    ****************************666634444566666777777.7799*********************************77 PP
   S: 267 visvavlsfgdnvlvlgsedskvniw 292
    + +++f++n++v++++ kv +w
   Q: 597 AVNAVAWCFSGNHVVSVDQVRKVVLW 622
    7777778***********99999999 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAGPSAPCDP CAPVAAWKRH ILRQLRHRDR TQKALFLELV PAYNHLLEKA ELLAKFSEKL 60
KSEPKDVIST PHQDSREEAS GTGPDQVSSP ASLKVKWQQE KKGLQLVCGE MAYQVVRKSA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-105529|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCGGGAC CCAGCGCCCC CTGCGATCCC TGCGCGCCCG TTGCCGCCTG GAAGCGCCAC 60
ATCCTGCGAC AGCTGCGGCA TCGGGACCGC ACGCAAAAGG CGCTCTTCTT GGAGCTAGTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105529|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR013923--Autophagy-rel_prot_16
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08614--ATG16
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0005654--C:nucleoplasm
GO:0000045--P:autophagosome assembly
GO:0039689--P:negative stranded viral RNA replication

KEGG rno:308865
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001470 Ailuropoda melanoleuca 64.96 0.00e+00 728.00
IUUC-Aca-004664 Anolis carolinensis 67.46 9.00e-102 362.00
IUUC-Ame-011152 Astyanax mexicanus 42.09 4.00e-120 425.00
IUUC-Bta-013118 Bos taurus 79.45 0.00e+00 886.00
IUUC-Cja-020002 Callithrix jacchus 81.49 0.00e+00 903.00
IUUC-Cfa-020878 Canis familiaris 78.87 0.00e+00 878.00
IUUC-Cpo-022476 Cavia porcellus 80.71 0.00e+00 880.00
IUUC-Csa-024134 Chlorocebus sabaeus 80.80 0.00e+00 895.00
IUUC-Cho-024853 Choloepus hoffmanni 67.32 2.00e-174 605.00
IUUC-Dre-027949 Danio rerio 41.15 1.00e-126 447.00
IUUC-Dno-029683 Dasypus novemcinctus 79.96 0.00e+00 748.00
IUUC-Dor-030897 Dipodomys ordii 74.44 0.00e+00 899.00
IUUC-Ete-032957 Echinops telfairi 89.64 2.00e-129 456.00
IUUC-Eca-033303 Equus caballus 87.35 1.00e-161 561.00
IUUC-Eeu-035336 Erinaceus europaeus 70.97 3.00e-148 518.00
IUUC-Fca-036232 Felis catus 81.12 0.00e+00 956.00
IUUC-Gmo-038880 Gadus morhua 49.30 9.00e-70 258.00
IUUC-Gac-042500 Gasterosteus aculeatus 40.26 4.00e-91 328.00
IUUC-Ggo-045130 Gorilla gorilla 87.34 0.00e+00 681.00
IUUC-Hsa-046359 Homo sapiens 82.18 0.00e+00 874.00
IUUC-Itr-048780 Ictidomys tridecemlineatus 82.49 0.00e+00 946.00
IUUC-Lch-050669 Latimeria chalumnae 51.12 6.00e-96 343.00
IUUC-Loc-052789 Lepisosteus oculatus 41.80 1.00e-116 414.00
IUUC-Laf-053699 Loxodonta africana 80.67 0.00e+00 900.00
IUUC-Mcc-055657 Macaca mulatta 76.24 0.00e+00 807.00
IUUC-Meu-056639 Macropus eugenii 48.83 4.00e-109 389.00
IUUC-Mmr-061314 Microcebus murinus 73.12 0.00e+00 800.00
IUUC-Mdo-061841 Monodelphis domestica 63.55 0.00e+00 702.00
IUUC-Mmu-064065 Mus musculus 95.22 0.00e+00 1107.00
IUUC-Mpu-066742 Mustela putorius furo 78.46 0.00e+00 868.00
IUUC-Mlu-067019 Myotis lucifugus 81.25 0.00e+00 798.00
IUUC-Nle-069037 Nomascus leucogenys 82.51 0.00e+00 916.00
IUUC-Opr-071039 Ochotona princeps 76.40 0.00e+00 857.00
IUUC-Oan-073431 Ornithorhynchus anatinus 72.22 2.00e-140 491.00
IUUC-Ocu-074772 Oryctolagus cuniculus 79.59 0.00e+00 806.00
IUUC-Ola-086964 Oryzias latipes 51.92 4.00e-83 301.00
IUUC-Oga-088188 Otolemur garnettii 80.06 0.00e+00 845.00
IUUC-Oar-090231 Ovis aries 73.81 0.00e+00 862.00
IUUC-Ptr-091434 Pan troglodytes 79.93 0.00e+00 836.00
IUUC-Pan-091868 Papio anubis 81.38 0.00e+00 891.00
IUUC-Psi-093652 Pelodiscus sinensis 64.27 3.00e-164 571.00
IUUC-Pfo-096960 Poecilia formosa 41.42 3.00e-99 355.00
IUUC-Pab-097776 Pongo abelii 81.88 0.00e+00 832.00
IUUC-Pca-100220 Procavia capensis 62.12 2.00e-171 595.00
IUUC-Pva-103135 Pteropus vampyrus 81.45 0.00e+00 845.00
IUUC-Sha-107062 Sarcophilus harrisii 63.75 0.00e+00 734.00
IUUC-Sar-113109 Sorex araneus 63.55 2.00e-129 455.00
IUUC-Ssc-115271 Sus scrofa 79.97 0.00e+00 882.00
IUUC-Ttr-128267 Tursiops truncatus 76.89 0.00e+00 832.00
Created Date 25-Jun-2017

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