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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-104854
UUCD1 version UUC-RaN-00815
Ensembl Protein ID ENSRNOP00000003068.2
UniProt Accession Q4V8C4; WDR5B_RAT
Genbank Protein ID AAH97449.1
Protein Name WD repeat-containing protein 5B
Genbank Nucleotide ID BC097449
Gene Name Wdr5b
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000002253.3 ENSRNOT00000003068.3 ENSRNOP00000003068.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.30e-55 182.4 121 160
UBD/Beta-Prp 1.50e-86 290.7 38 325
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
    gH+d v+c++f +++l+vsGs D ++k+W+++tg++lk+
   Q: 121 GHSDFVFCCDFnpPSNLIVSGSFDESVKIWEVKTGKCLKT 160
    8***********766**********************986 PP
   


   UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
    h++ i++vkfsp++++la++ +d+ i++w + +gk+ ++l+gh+ e+++v +s+d++ lv++s+D+t+k+wd+++gkc+ tlkgh+d v
   Q: 38 HSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFV 126
    6778999********************************************************************************** PP
   S: 98 lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
    +++f+p ++ +vsGs d+ +++w+++tg+cl+ tls h++ ++ v++h++g+l+vsGs+D+ +r+Wd ++g++lrtl + +++v +
   Q: 127 FCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLK-TLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFV 214
    *********************************.********************************************8889******* PP
   S: 187 sfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs...pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
    +f++ngk+++++ ld+t+klwd+++g+c++t++gh++ +++ +s +++vsgs+D+ ++iW+l+++++++ lq+h + vis a+
   Q: 215 KFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASfsvTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAAC 303
    ******************************************9999999**************************************** PP
   S: 273 lsfgdnvlvlgse..dskvniwk 293
    ++++n++++++ d++++iw+
   Q: 304 -HPTENIIASAALenDKTIKIWS 325
    .*******9998888*******8 PP
   

Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.
Protein Sequence
(Fasta)
MATEHLPAER AQSPLSAPQR VEEPQKPNYA LRLTLAGHSA AISSVKFSPN GEWLASSAAD 60
ALIIIWGAYD GKCKKTLYGH SLEISDVAWS SDSSRLVSAS DDKTLKLWDV RSGKCLKTLK 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-104854|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGCAGCCTGG AAGGGTGTGT ACCTGGCGTC GTCCTGGGCT CTGCTTGAGC CTCTCAAATC 60
CTGATTCGTG TGACGTCATC CGTTGCTCAC TATTTCCCGA CATTTTGGAG CTTGGGAGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-104854|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0036064--C:ciliary basal body
GO:0060271--P:cilium assembly

KEGG rno:303907
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ago-007915 Ashbya gossypii 39.21 2.00e-47 182.00
IUUC-Cja-019578 Callithrix jacchus 86.97 4.00e-156 543.00
IUUC-Cpo-022546 Cavia porcellus 81.79 2.00e-152 531.00
IUUC-Csa-023312 Chlorocebus sabaeus 86.97 3.00e-164 570.00
IUUC-Cho-024642 Choloepus hoffmanni 83.89 7.00e-157 546.00
IUUC-Dno-029939 Dasypus novemcinctus 84.42 2.00e-158 551.00
IUUC-Dor-031095 Dipodomys ordii 84.52 8.00e-158 549.00
IUUC-Ete-033098 Echinops telfairi 78.42 1.00e-155 541.00
IUUC-Eca-033673 Equus caballus 83.80 3.00e-155 540.00
IUUC-Ggo-045028 Gorilla gorilla 88.27 4.00e-157 547.00
IUUC-Hsa-046956 Homo sapiens 87.95 4.00e-157 546.00
IUUC-Itr-048459 Ictidomys tridecemlineatus 86.22 2.00e-151 528.00
IUUC-Mcc-055321 Macaca mulatta 87.62 8.00e-157 546.00
IUUC-Mmu-064411 Mus musculus 96.33 2.00e-173 601.00
IUUC-Mlu-067690 Myotis lucifugus 83.03 1.00e-152 532.00
IUUC-Nle-069383 Nomascus leucogenys 87.95 6.00e-157 546.00
IUUC-Oga-088826 Otolemur garnettii 84.24 2.00e-158 551.00
IUUC-Ptr-091660 Pan troglodytes 87.95 5.00e-157 546.00
IUUC-Pan-092419 Papio anubis 87.62 8.00e-157 546.00
IUUC-Pab-098758 Pongo abelii 87.30 2.00e-156 544.00
Created Date 25-Jun-2017

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