iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-014351

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM000880

Gene Name

LOC100842829; BRADI_1g22300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI1G22300	BRADI1G22300.1	BRADI1G22300.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-35	120.7	273	307
UBD/Beta-Prp	1.80e-41	142.8	267	427

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgv 34
           gHt  v+++a+++ +++ s+s+D++i+ WD  tg+
   Q: 273  GHTQCVSSVAWPEqRTIYSASWDHSIRQWDAQTGK 307
           8**********88899**************99987 PP

UBD/Beta-Prp

   S: 86   cvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtl..t 176
             +tl gh++ v s+++ + + ++ s+s+d  ir wd +tg++    +    ++ nc+ + +++ +l+++G+ D ++r+Wd  k g+l   +  +
   Q: 267  ASSTLLGHTQCVSSVAWPE-QRTIYSASWDHSIRQWDAQTGKETW--NMFAGKALNCLDIGGESsSLIAAGGSDPVLRVWDPrKPGTLAPSFqfS 358
           568999***********88.99**********************6..5556667***************************96778999888756 PP
   S: 177  gghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
           + h + +   ++++++ ++l+s s dg+v lwdl+t   + ++  h+d v++ + + +++ ++sg++D  +
   Q: 359  S-HSSWISACKWHPSSwFHLISSSFDGKVMLWDLRTAWPLASVDSHKDKVLCADWW-KGNSVISGGADSKL 427
           6.9999*********9****************************************.99********9876 PP

Organism

Brachypodium distachyon

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDAADPSRQV RVRFVTKLPP PLRAPPTAIA VPAELSRMGL SEIVNRLLLA GEPDHQAQPF 60
DFLVDGELVR MPLQQFLLAK GISAERVLEL EYVKAVAPRK QEQPLPHDDW VSAVDGSNPG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACGCCG CCGACCCGTC GCGCCAGGTG CGCGTGCGCT TCGTGACGAA GCTGCCGCCC 60
CCGCTCCGCG CGCCGCCCAC CGCCATCGCG GTCCCCGCCG AGCTCTCCCG CATGGGCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

bdi:100842829

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	91.20	0.00e+00	811.00
IUUC-Aml-001997	Ailuropoda melanoleuca	36.82	1.00e-59	223.00
IUUC-Atr-002544	Amborella trichopoda	61.24	1.00e-160	558.00
IUUC-Apl-003981	Anas platyrhynchos	35.81	3.00e-57	214.00
IUUC-Aca-004370	Anolis carolinensis	33.97	1.00e-63	236.00
IUUC-Aly-006455	Arabidopsis lyrata	62.61	6.00e-168	582.00
IUUC-Ath-006669	Arabidopsis thaliana	62.39	2.00e-164	571.00
IUUC-Ago-007864	Ashbya gossypii	30.82	1.00e-48	186.00
IUUC-Acl-008177	Aspergillus clavatus	30.07	2.00e-41	162.00
IUUC-Afl-008617	Aspergillus flavus	30.84	4.00e-38	151.00
IUUC-Afu-008752	Aspergillus fumigatus	30.26	4.00e-38	151.00
IUUC-Ani-009136	Aspergillus nidulans	30.40	3.00e-40	159.00
IUUC-Ang-009701	Aspergillus niger	30.20	6.00e-37	147.00
IUUC-Aor-009884	Aspergillus oryzae	30.84	2.00e-38	152.00
IUUC-Ame-011432	Astyanax mexicanus	34.60	4.00e-66	244.00
IUUC-Bgr-012218	Blumeria graminis	29.07	3.00e-36	145.00
IUUC-Bta-012829	Bos taurus	35.07	1.00e-59	223.00
IUUC-Bci-013953	Botrytis cinerea	28.72	2.00e-35	142.00
IUUC-Bol-016514	Brassica oleracea	62.76	4.00e-157	546.00
IUUC-Bra-016988	Brassica rapa	62.76	1.00e-157	548.00
IUUC-Cel-018569	Caenorhabditis elegans	25.23	2.00e-28	119.00
IUUC-Cja-019468	Callithrix jacchus	35.55	2.00e-57	215.00
IUUC-Cfa-020471	Canis familiaris	35.55	2.00e-57	216.00
IUUC-Cpo-022260	Cavia porcellus	37.44	1.00e-60	226.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.45	1.00e-65	242.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.31	2.00e-57	215.00
IUUC-Cho-024426	Choloepus hoffmanni	33.85	6.00e-43	167.00
IUUC-Cin-025789	Ciona intestinalis	32.03	2.00e-51	195.00
IUUC-Cne-027063	Cryptococcus neoformans	26.88	6.00e-26	111.00
IUUC-Dre-027907	Danio rerio	35.55	2.00e-67	249.00
IUUC-Dno-029225	Dasypus novemcinctus	35.55	5.00e-60	224.00
IUUC-Dor-031082	Dipodomys ordii	31.85	1.00e-26	113.00
IUUC-Dse-031308	Dothistroma septosporum	33.83	2.00e-51	196.00
IUUC-Dme-032189	Drosophila melanogaster	28.77	1.00e-44	173.00
IUUC-Ete-032247	Echinops telfairi	33.41	6.00e-53	200.00
IUUC-Eca-034285	Equus caballus	35.78	9.00e-60	223.00
IUUC-Eeu-035322	Erinaceus europaeus	30.30	8.00e-48	183.00
IUUC-Fca-036114	Felis catus	35.55	3.00e-59	221.00
IUUC-Fal-036891	Ficedula albicollis	35.31	1.00e-50	192.00
IUUC-Fox-037965	Fusarium oxysporum	25.05	9.00e-30	124.00
IUUC-Fso-038244	Fusarium solani	25.99	1.00e-32	133.00
IUUC-Gmo-039040	Gadus morhua	35.55	4.00e-68	251.00
IUUC-Ggr-040093	Gaeumannomyces graminis	23.01	2.00e-26	112.00
IUUC-Gga-040610	Gallus gallus	35.07	3.00e-62	231.00
IUUC-Gac-042117	Gasterosteus aculeatus	33.96	6.00e-65	240.00
IUUC-Gma-043967	Glycine max	66.05	9.00e-169	585.00
IUUC-Ggo-045179	Gorilla gorilla	35.07	4.00e-57	214.00
IUUC-Hsa-046114	Homo sapiens	35.31	3.00e-57	215.00
IUUC-Hvu-047331	Hordeum vulgare	89.95	0.00e+00	719.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.78	4.00e-60	224.00
IUUC-Kpa-049304	Komagataella pastoris	26.82	3.00e-42	165.00
IUUC-Lch-050655	Latimeria chalumnae	31.70	5.00e-43	167.00
IUUC-Lpe-051675	Leersia perrieri	84.53	0.00e+00	756.00
IUUC-Loc-052868	Lepisosteus oculatus	35.13	3.00e-67	248.00
IUUC-Lma-053258	Leptosphaeria maculans	32.30	1.00e-41	165.00
IUUC-Laf-053993	Loxodonta africana	35.78	4.00e-60	224.00
IUUC-Mcc-055128	Macaca mulatta	26.84	6.00e-34	137.00
IUUC-Meu-056501	Macropus eugenii	35.59	2.00e-49	188.00
IUUC-Mor-057114	Magnaporthe oryzae	28.60	3.00e-37	148.00
IUUC-Mpo-057463	Magnaporthe poae	31.55	4.00e-17	80.50
IUUC-Mtr-058367	Medicago truncatula	63.55	2.00e-157	548.00
IUUC-Mla-059107	Melampsora laricipopulina	26.38	3.00e-38	152.00
IUUC-Mga-059745	Meleagris gallopavo	35.15	1.00e-60	226.00
IUUC-Mvi-060362	Microbotryum violaceum	27.29	3.00e-35	142.00
IUUC-Mdo-062257	Monodelphis domestica	35.93	7.00e-64	236.00
IUUC-Mmu-063546	Mus musculus	34.60	1.00e-58	219.00
IUUC-Mac-065540	Musa acuminata	70.82	0.00e+00	637.00
IUUC-Mpu-066284	Mustela putorius furo	35.31	3.00e-59	222.00
IUUC-Mlu-067241	Myotis lucifugus	36.02	1.00e-60	226.00
IUUC-Nfi-068260	Neosartorya fischeri	30.50	3.00e-40	158.00
IUUC-Ncr-068719	Neurospora crassa	28.50	2.00e-31	129.00
IUUC-Nle-068981	Nomascus leucogenys	35.55	2.00e-56	212.00
IUUC-Opr-071218	Ochotona princeps	34.15	6.00e-55	207.00
IUUC-Ont-071646	Oreochromis niloticus	34.12	2.00e-59	222.00
IUUC-Oan-073453	Ornithorhynchus anatinus	35.93	1.00e-67	249.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.78	2.00e-60	225.00
IUUC-Oba-075712	Oryza barthii	73.15	0.00e+00	626.00
IUUC-Obr-076721	Oryza brachyantha	83.14	0.00e+00	753.00
IUUC-Ogl-077229	Oryza glaberrima	84.33	0.00e+00	759.00
IUUC-Ogu-078977	Oryza glumaepatula	73.61	0.00e+00	630.00
IUUC-Oin-079683	Oryza indica	84.56	0.00e+00	761.00
IUUC-Olo-080291	Oryza longistaminata	62.73	1.00e-126	444.00
IUUC-Ome-081834	Oryza meridionalis	85.08	0.00e+00	757.00
IUUC-Oni-082507	Oryza nivara	82.26	0.00e+00	728.00
IUUC-Opu-083396	Oryza punctata	84.33	0.00e+00	759.00
IUUC-Oru-085220	Oryza rufipogon	82.49	0.00e+00	729.00
IUUC-Osa-085767	Oryza sativa	84.56	0.00e+00	761.00
IUUC-Ola-087420	Oryzias latipes	34.60	2.00e-67	248.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.26	4.00e-63	234.00
IUUC-Oga-088264	Otolemur garnettii	35.07	4.00e-57	214.00
IUUC-Oar-089335	Ovis aries	35.31	3.00e-60	224.00
IUUC-Ptr-091320	Pan troglodytes	35.31	3.00e-57	215.00
IUUC-Pan-092833	Papio anubis	35.07	3.00e-57	214.00
IUUC-Psi-093504	Pelodiscus sinensis	33.89	6.00e-57	214.00
IUUC-Pma-094189	Petromyzon marinus	35.63	1.00e-63	236.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.25	7.00e-39	154.00
IUUC-Ppa-095429	Physcomitrella patens	51.17	3.00e-124	437.00
IUUC-Pfo-096337	Poecilia formosa	35.70	1.00e-66	246.00
IUUC-Pab-097571	Pongo abelii	35.31	3.00e-57	214.00
IUUC-Pop-099977	Populus trichocarpa	64.91	6.00e-170	589.00
IUUC-Pca-100394	Procavia capensis	33.83	5.00e-48	184.00
IUUC-Ppe-101848	Prunus persica	62.99	3.00e-167	580.00
IUUC-Pva-102921	Pteropus vampyrus	32.30	2.00e-25	108.00
IUUC-Pgr-103637	Puccinia graminis	27.97	6.00e-41	160.00
IUUC-Ptt-103781	Puccinia triticina	30.00	1.00e-40	159.00
IUUC-Pte-104135	Pyrenophora teres	30.30	9.00e-40	158.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.18	1.00e-41	163.00
IUUC-Rno-105114	Rattus norvegicus	34.60	5.00e-58	217.00
IUUC-Sce-106401	Saccharomyces cerevisiae	28.99	4.00e-45	174.00
IUUC-Sha-107122	Sarcophilus harrisii	36.17	6.00e-63	234.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.50	2.00e-41	162.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.05	1.00e-38	153.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.93	9.00e-41	160.00
IUUC-Smo-108720	Selaginella moellendorffii	48.36	1.00e-118	418.00
IUUC-Sit-110354	Setaria italica	87.50	0.00e+00	789.00
IUUC-Sly-111023	Solanum lycopersicum	59.44	4.00e-158	550.00
IUUC-Stu-112778	Solanum tuberosum	64.22	6.00e-166	576.00
IUUC-Sar-113596	Sorex araneus	33.07	4.00e-45	174.00
IUUC-Sbi-114193	Sorghum bicolor	85.45	0.00e+00	733.00
IUUC-Sre-115002	Sporisorium reilianum	27.56	1.00e-17	83.60
IUUC-Ssc-116066	Sus scrofa	35.31	2.00e-59	222.00
IUUC-Tgu-117048	Taeniopygia guttata	35.54	6.00e-57	213.00
IUUC-Tsy-119573	Tarsius syrichta	22.79	3.00e-15	75.10
IUUC-Tni-119820	Tetraodon nigroviridis	35.93	3.00e-63	234.00
IUUC-Tca-121605	Theobroma cacao	66.36	1.00e-173	601.00
IUUC-Tre-121947	Trichoderma reesei	25.00	4.00e-32	131.00
IUUC-Tvi-122481	Trichoderma virens	25.05	1.00e-31	130.00
IUUC-Tae-125861	Triticum aestivum	91.44	0.00e+00	813.00
IUUC-Tur-126586	Triticum urartu	90.70	0.00e+00	746.00
IUUC-Tme-126900	Tuber melanosporum	31.77	1.00e-50	193.00
IUUC-Tbe-127736	Tupaia belangeri	37.66	3.00e-22	99.00
IUUC-Ttr-129041	Tursiops truncatus	31.68	2.00e-43	169.00
IUUC-Uma-129628	Ustilago maydis	24.59	1.00e-11	63.50
IUUC-Vpa-130260	Vicugna pacos	35.31	1.00e-59	223.00
IUUC-Vvi-131009	Vitis vinifera	68.51	0.00e+00	636.00
IUUC-Xtr-132083	Xenopus tropicalis	36.26	2.00e-61	228.00
IUUC-Xma-133094	Xiphophorus maculatus	34.44	1.00e-64	239.00
IUUC-Yli-134531	Yarrowia lipolytica	27.57	1.00e-32	133.00
IUUC-Zma-135509	Zea mays	84.49	0.00e+00	762.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence