iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bci-013953

Ensembl Protein ID

Bcin06g06690.1

UniProt Accession

A6S0T8; YTM1_BOTFB

Genbank Protein ID

EDN26016.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

CH476872

Gene Name

ytm1; BC1G_06312

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bcin06g06690	Bcin06g06690.1	Bcin06g06690.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-26	89.1	371	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           gHt+ v+++ f  +d ++ lvs+++Dgt++vWDlr+ 
   Q: 371  GHTNFVSSI-FadPDsNYgLVSAGHDGTCRVWDLRST 406
           89999***9.***888999***************985 PP

Organism

Botrytis cinerea

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAQGQVQVHF STTSPDIELP EGKQQLLVPT NVRRYGLSQI LNSEAMLDTS SPIPFDFLIN 60
GTFLRTTLDE YLTANGLSSE TTLNLQYVRS LIPPLYEASF EHDDWVSSVD VLSGSSAAGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCAAG GACAGGTTCA AGTGCATTTC AGCACCACAT CTCCAGATAT CGAATTACCT 60
GAAGGAAAAC AACAATTGCT CGTTCCTACC AGTAAGTTTT GACCCAAGTT TCTCTCGGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0539--Nucleus
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0006364--P:rRNA processing

KEGG

bfu:BC1G_06312

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	28.40	5.00e-42	163.00
IUUC-Aml-001997	Ailuropoda melanoleuca	30.43	3.00e-34	137.00
IUUC-Atr-002544	Amborella trichopoda	26.63	5.00e-37	146.00
IUUC-Apl-003981	Anas platyrhynchos	30.66	4.00e-38	150.00
IUUC-Aca-004370	Anolis carolinensis	28.74	2.00e-42	164.00
IUUC-Aly-006455	Arabidopsis lyrata	27.83	3.00e-41	160.00
IUUC-Ath-006669	Arabidopsis thaliana	27.95	1.00e-37	149.00
IUUC-Ago-007864	Ashbya gossypii	40.95	3.00e-90	323.00
IUUC-Acl-008177	Aspergillus clavatus	57.11	7.00e-152	528.00
IUUC-Afl-008617	Aspergillus flavus	56.81	4.00e-146	509.00
IUUC-Afu-008752	Aspergillus fumigatus	56.60	3.00e-144	503.00
IUUC-Ani-009136	Aspergillus nidulans	57.45	9.00e-148	514.00
IUUC-Ang-009701	Aspergillus niger	56.90	1.00e-138	484.00
IUUC-Aor-009884	Aspergillus oryzae	57.02	1.00e-146	511.00
IUUC-Ate-010472	Aspergillus terreus	56.63	1.00e-93	334.00
IUUC-Ame-011432	Astyanax mexicanus	28.88	6.00e-43	166.00
IUUC-Bgr-012218	Blumeria graminis	63.08	9.00e-172	594.00
IUUC-Bta-012829	Bos taurus	29.97	1.00e-34	139.00
IUUC-Bdi-014351	Brachypodium distachyon	28.72	3.00e-36	144.00
IUUC-Bol-016190	Brassica oleracea	28.89	4.00e-40	157.00
IUUC-Bra-016988	Brassica rapa	28.01	7.00e-38	149.00
IUUC-Cja-019468	Callithrix jacchus	30.64	2.00e-33	135.00
IUUC-Cfa-020471	Canis familiaris	30.31	2.00e-34	138.00
IUUC-Cpo-022260	Cavia porcellus	30.83	9.00e-34	135.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.13	2.00e-40	157.00
IUUC-Csa-023989	Chlorocebus sabaeus	30.64	5.00e-33	133.00
IUUC-Cho-024426	Choloepus hoffmanni	30.09	1.00e-27	115.00
IUUC-Cin-025789	Ciona intestinalis	27.03	6.00e-28	116.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	56.70	1.00e-45	174.00
IUUC-Cne-027063	Cryptococcus neoformans	26.88	1.00e-27	116.00
IUUC-Dre-027907	Danio rerio	29.67	2.00e-43	168.00
IUUC-Dno-029225	Dasypus novemcinctus	30.31	5.00e-34	136.00
IUUC-Dor-031082	Dipodomys ordii	31.53	3.00e-18	84.30
IUUC-Dse-031308	Dothistroma septosporum	45.73	1.00e-112	398.00
IUUC-Dme-032189	Drosophila melanogaster	26.45	8.00e-35	139.00
IUUC-Ete-032247	Echinops telfairi	29.11	2.00e-30	125.00
IUUC-Eca-034285	Equus caballus	30.05	8.00e-34	136.00
IUUC-Fca-036114	Felis catus	30.57	9.00e-35	139.00
IUUC-Fal-036891	Ficedula albicollis	28.75	7.00e-31	126.00
IUUC-Fox-037965	Fusarium oxysporum	57.38	2.00e-153	533.00
IUUC-Fso-038244	Fusarium solani	57.84	8.00e-150	521.00
IUUC-Gmo-039040	Gadus morhua	27.04	8.00e-41	159.00
IUUC-Ggr-040093	Gaeumannomyces graminis	52.27	9.00e-122	428.00
IUUC-Gga-040610	Gallus gallus	30.08	3.00e-37	147.00
IUUC-Gac-042117	Gasterosteus aculeatus	29.56	9.00e-42	162.00
IUUC-Gma-043756	Glycine max	30.60	8.00e-44	169.00
IUUC-Ggo-045179	Gorilla gorilla	30.92	1.00e-34	139.00
IUUC-Hsa-046114	Homo sapiens	30.92	8.00e-34	136.00
IUUC-Hvu-047331	Hordeum vulgare	29.16	1.00e-32	132.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	30.05	1.00e-34	139.00
IUUC-Kpa-049304	Komagataella pastoris	39.75	4.00e-95	340.00
IUUC-Lch-050655	Latimeria chalumnae	28.45	3.00e-31	127.00
IUUC-Lpe-051675	Leersia perrieri	28.90	1.00e-41	162.00
IUUC-Loc-052868	Lepisosteus oculatus	28.61	1.00e-41	162.00
IUUC-Lma-053258	Leptosphaeria maculans	48.84	4.00e-125	441.00
IUUC-Laf-053993	Loxodonta africana	30.60	1.00e-36	145.00
IUUC-Mcc-055128	Macaca mulatta	27.98	1.00e-23	102.00
IUUC-Meu-056501	Macropus eugenii	29.13	1.00e-33	135.00
IUUC-Mor-057114	Magnaporthe oryzae	59.62	3.00e-162	563.00
IUUC-Mpo-057463	Magnaporthe poae	62.30	5.00e-60	221.00
IUUC-Mtr-058367	Medicago truncatula	27.85	2.00e-36	144.00
IUUC-Mla-059107	Melampsora laricipopulina	27.94	9.00e-40	155.00
IUUC-Mga-059745	Meleagris gallopavo	29.95	5.00e-37	146.00
IUUC-Mvi-060362	Microbotryum violaceum	28.80	3.00e-37	147.00
IUUC-Mdo-062257	Monodelphis domestica	29.38	1.00e-36	145.00
IUUC-Mmu-063546	Mus musculus	29.64	2.00e-34	138.00
IUUC-Mac-065540	Musa acuminata	27.46	7.00e-40	156.00
IUUC-Mpu-066284	Mustela putorius furo	29.54	3.00e-35	140.00
IUUC-Mlu-067241	Myotis lucifugus	30.23	6.00e-35	140.00
IUUC-Nfi-068260	Neosartorya fischeri	57.65	8.00e-149	518.00
IUUC-Ncr-068719	Neurospora crassa	60.67	3.00e-156	543.00
IUUC-Nle-068981	Nomascus leucogenys	30.83	4.00e-34	137.00
IUUC-Opr-071218	Ochotona princeps	28.64	1.00e-34	138.00
IUUC-Ont-071646	Oreochromis niloticus	27.39	1.00e-37	149.00
IUUC-Oan-073453	Ornithorhynchus anatinus	28.95	8.00e-42	162.00
IUUC-Ocu-074008	Oryctolagus cuniculus	30.57	1.00e-35	142.00
IUUC-Oba-075712	Oryza barthii	25.78	3.00e-29	121.00
IUUC-Obr-076721	Oryza brachyantha	28.75	1.00e-41	162.00
IUUC-Ogl-077229	Oryza glaberrima	28.84	4.00e-42	163.00
IUUC-Ogu-078977	Oryza glumaepatula	25.99	9.00e-30	122.00
IUUC-Oin-079683	Oryza indica	29.05	2.00e-42	164.00
IUUC-Olo-080291	Oryza longistaminata	28.38	1.00e-22	98.60
IUUC-Ome-081834	Oryza meridionalis	29.25	2.00e-42	165.00
IUUC-Oni-082507	Oryza nivara	27.59	3.00e-36	144.00
IUUC-Opu-083396	Oryza punctata	28.22	5.00e-40	157.00
IUUC-Oru-085220	Oryza rufipogon	27.59	2.00e-36	144.00
IUUC-Osa-085767	Oryza sativa	29.05	2.00e-42	164.00
IUUC-Ola-087420	Oryzias latipes	29.04	6.00e-43	166.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.39	5.00e-31	127.00
IUUC-Oga-088264	Otolemur garnettii	29.44	8.00e-34	136.00
IUUC-Oar-089335	Ovis aries	29.97	2.00e-34	138.00
IUUC-Ptr-091320	Pan troglodytes	30.92	8.00e-34	136.00
IUUC-Pan-092833	Papio anubis	30.36	2.00e-33	134.00
IUUC-Psi-093504	Pelodiscus sinensis	30.33	5.00e-37	146.00
IUUC-Pma-094189	Petromyzon marinus	29.51	6.00e-38	149.00
IUUC-Pno-094929	Phaeosphaeria nodorum	49.16	8.00e-124	435.00
IUUC-Ppa-095429	Physcomitrella patens	29.47	6.00e-48	183.00
IUUC-Pfo-096337	Poecilia formosa	28.82	8.00e-42	162.00
IUUC-Pab-097571	Pongo abelii	30.92	1.00e-33	135.00
IUUC-Pop-099977	Populus trichocarpa	27.22	5.00e-42	163.00
IUUC-Pca-100394	Procavia capensis	28.36	8.00e-30	122.00
IUUC-Ppe-101848	Prunus persica	30.77	3.00e-40	157.00
IUUC-Pva-102921	Pteropus vampyrus	32.58	3.00e-19	87.80
IUUC-Pgr-103637	Puccinia graminis	25.45	1.00e-44	172.00
IUUC-Ptt-103781	Puccinia triticina	26.10	7.00e-46	176.00
IUUC-Pte-104135	Pyrenophora teres	48.55	3.00e-115	408.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	47.37	5.00e-118	416.00
IUUC-Rno-105114	Rattus norvegicus	30.33	2.00e-35	141.00
IUUC-Sce-106401	Saccharomyces cerevisiae	39.48	1.00e-88	318.00
IUUC-Sha-107122	Sarcophilus harrisii	28.19	4.00e-33	134.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	37.26	1.00e-81	295.00
IUUC-Spo-108134	Schizosaccharomyces pombe	37.76	2.00e-81	294.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	94.13	0.00e+00	925.00
IUUC-Smo-108720	Selaginella moellendorffii	28.61	1.00e-34	138.00
IUUC-Sit-110354	Setaria italica	27.89	5.00e-41	160.00
IUUC-Sly-111178	Solanum lycopersicum	31.12	2.00e-46	178.00
IUUC-Stu-112169	Solanum tuberosum	31.19	2.00e-46	178.00
IUUC-Sbi-114193	Sorghum bicolor	29.77	6.00e-40	156.00
IUUC-Sre-115002	Sporisorium reilianum	27.90	2.00e-29	122.00
IUUC-Ssc-116066	Sus scrofa	30.31	7.00e-35	139.00
IUUC-Tgu-117048	Taeniopygia guttata	29.81	4.00e-37	147.00
IUUC-Tni-119820	Tetraodon nigroviridis	27.41	2.00e-39	154.00
IUUC-Tca-121605	Theobroma cacao	29.30	4.00e-44	170.00
IUUC-Tre-121947	Trichoderma reesei	56.66	5.00e-151	525.00
IUUC-Tvi-122481	Trichoderma virens	56.66	7.00e-151	525.00
IUUC-Tae-123847	Triticum aestivum	28.40	5.00e-42	163.00
IUUC-Tur-126586	Triticum urartu	27.88	1.00e-37	148.00
IUUC-Tme-126900	Tuber melanosporum	43.07	4.00e-105	373.00
IUUC-Uma-129628	Ustilago maydis	27.17	1.00e-24	106.00
IUUC-Vpa-130260	Vicugna pacos	29.64	4.00e-34	137.00
IUUC-Vvi-131009	Vitis vinifera	31.03	8.00e-46	176.00
IUUC-Xtr-132083	Xenopus tropicalis	30.12	4.00e-41	160.00
IUUC-Xma-133094	Xiphophorus maculatus	28.82	5.00e-42	163.00
IUUC-Yli-134531	Yarrowia lipolytica	35.14	2.00e-69	254.00
IUUC-Zma-135509	Zea mays	29.76	1.00e-40	158.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence