iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ogl-077229

UUCD1 version

UUC-OrG-02025

Ensembl Protein ID

ORGLA07G0163400.1

UniProt Accession

I1QBZ2; I1QBZ2_ORYGL

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORGLA07G0163400	ORGLA07G0163400.1	ORGLA07G0163400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-35	120.6	360	394
UBD/Beta-Prp	5.60e-42	144.6	265	426

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++++++  s+  +lvs+s Dg++++WDlrt 
   Q: 360  HKSWISACKWhpSSwFHLVSSSFDGKVMLWDLRTA 394
           9**********755677***************996 PP

UBD/Beta-Prp

   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllr 173
           g+ ++t+ gh++ v ++++ + ++++ s+s+d  +r wd++tg++    + +  ++ nc+   +++ +l+++G+ D ++r+Wd  k g+l  
   Q: 265  GSATSTFLGHTQCVSAVTWPE-RQTIYSASWDHSVRQWDVQTGKET--WNMVSGKALNCLDCGGESsSLIAAGGSDPVLRVWDPrKPGTLAP 353
           67789**************88.***********************9..699***************9****************965567766 PP
   S: 174  tl..tgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgs 245
            +  ++ h++ +   ++++++ ++lvs s dg+v lwdl+t   + +++ h+d v++ + + +++ ++sg++D  
   Q: 354  IFqfSS-HKSWISACKWHPSSwFHLVSSSFDGKVMLWDLRTAWPLASVETHKDKVLCADWW-KGDSVISGGADSK 426
           665477.******************************************************.8999999999976 PP

Organism

Oryza glaberrima

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDSGGASDPS RQVRVRFVTK LPAPLRAPPT SIAVPADLTR MGLSEIVNSL LLAASPDHQA 60
QPFDFLVDGE LVRLPLQEFL LAKGISVERV LELEYVKAVA PRKQEDPCPH DDWVSAVDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACTCCG GCGGCGCCTC CGACCCCTCG CGCCAGGTGC GGGTGCGCTT CGTGACGAAG 60
CTCCCCGCGC CGCTGCGCGC GCCGCCCACC TCCATCGCCG TCCCCGCCGA CCTCACCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	84.72	0.00e+00	759.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.59	2.00e-55	208.00
IUUC-Atr-002544	Amborella trichopoda	62.88	1.00e-161	561.00
IUUC-Apl-003981	Anas platyrhynchos	34.40	4.00e-57	214.00
IUUC-Aca-004370	Anolis carolinensis	34.69	2.00e-64	238.00
IUUC-Aly-006455	Arabidopsis lyrata	62.79	4.00e-167	580.00
IUUC-Ath-006669	Arabidopsis thaliana	62.70	2.00e-163	567.00
IUUC-Ago-007864	Ashbya gossypii	30.97	2.00e-45	175.00
IUUC-Acl-008177	Aspergillus clavatus	29.57	7.00e-42	164.00
IUUC-Afl-008617	Aspergillus flavus	29.82	1.00e-38	152.00
IUUC-Afu-008752	Aspergillus fumigatus	28.82	3.00e-39	155.00
IUUC-Ani-009136	Aspergillus nidulans	30.30	6.00e-40	157.00
IUUC-Ang-009701	Aspergillus niger	29.66	3.00e-37	148.00
IUUC-Aor-009884	Aspergillus oryzae	29.82	8.00e-39	154.00
IUUC-Ate-010472	Aspergillus terreus	26.41	3.00e-13	68.20
IUUC-Ame-011432	Astyanax mexicanus	34.61	6.00e-66	243.00
IUUC-Bgr-012218	Blumeria graminis	28.91	2.00e-38	152.00
IUUC-Bta-012829	Bos taurus	34.37	2.00e-56	212.00
IUUC-Bci-013953	Botrytis cinerea	28.72	2.00e-39	155.00
IUUC-Bdi-014351	Brachypodium distachyon	84.33	0.00e+00	735.00
IUUC-Bol-016514	Brassica oleracea	62.90	6.00e-155	539.00
IUUC-Bra-016988	Brassica rapa	63.13	1.00e-155	541.00
IUUC-Cel-018569	Caenorhabditis elegans	24.94	7.00e-27	114.00
IUUC-Cja-019468	Callithrix jacchus	34.84	2.00e-54	205.00
IUUC-Cfa-020471	Canis familiaris	33.97	3.00e-54	205.00
IUUC-Cpo-022260	Cavia porcellus	35.80	2.00e-56	212.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.11	3.00e-66	244.00
IUUC-Csa-023989	Chlorocebus sabaeus	34.61	1.00e-54	206.00
IUUC-Cho-024426	Choloepus hoffmanni	33.75	3.00e-41	161.00
IUUC-Cin-025789	Ciona intestinalis	32.51	2.00e-52	198.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	29.21	1.00e-06	45.40
IUUC-Cne-027063	Cryptococcus neoformans	26.29	3.00e-26	112.00
IUUC-Dre-027907	Danio rerio	34.93	3.00e-66	244.00
IUUC-Dno-029225	Dasypus novemcinctus	34.84	4.00e-57	214.00
IUUC-Dor-031082	Dipodomys ordii	32.90	1.00e-24	106.00
IUUC-Dse-031308	Dothistroma septosporum	36.59	2.00e-53	202.00
IUUC-Dme-032189	Drosophila melanogaster	29.29	4.00e-44	171.00
IUUC-Ete-032247	Echinops telfairi	33.17	5.00e-50	190.00
IUUC-Eca-034285	Equus caballus	34.37	2.00e-55	209.00
IUUC-Eeu-035322	Erinaceus europaeus	30.27	2.00e-45	175.00
IUUC-Fca-036114	Felis catus	34.61	1.00e-55	209.00
IUUC-Fal-036891	Ficedula albicollis	34.43	1.00e-50	192.00
IUUC-Fox-037965	Fusarium oxysporum	27.35	4.00e-33	135.00
IUUC-Fso-038244	Fusarium solani	27.44	5.00e-36	144.00
IUUC-Gmo-039040	Gadus morhua	34.69	6.00e-67	246.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.47	4.00e-29	121.00
IUUC-Gga-040610	Gallus gallus	34.21	1.00e-61	229.00
IUUC-Gac-042117	Gasterosteus aculeatus	34.20	5.00e-64	237.00
IUUC-Gma-043756	Glycine max	62.47	2.00e-165	574.00
IUUC-Ggo-045179	Gorilla gorilla	34.37	5.00e-54	204.00
IUUC-Hsa-046114	Homo sapiens	34.61	2.00e-54	205.00
IUUC-Hvu-047331	Hordeum vulgare	83.17	0.00e+00	667.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.08	8.00e-57	213.00
IUUC-Kpa-049304	Komagataella pastoris	29.11	4.00e-46	177.00
IUUC-Lch-050655	Latimeria chalumnae	31.10	5.00e-41	160.00
IUUC-Lpe-051675	Leersia perrieri	94.94	0.00e+00	840.00
IUUC-Loc-052868	Lepisosteus oculatus	34.28	1.00e-65	243.00
IUUC-Lma-053258	Leptosphaeria maculans	32.61	5.00e-45	176.00
IUUC-Laf-053993	Loxodonta africana	34.84	9.00e-57	213.00
IUUC-Mcc-055128	Macaca mulatta	27.68	7.00e-33	133.00
IUUC-Meu-056501	Macropus eugenii	35.01	1.00e-48	186.00
IUUC-Mor-057114	Magnaporthe oryzae	29.51	1.00e-40	160.00
IUUC-Mpo-057463	Magnaporthe poae	33.93	6.00e-19	86.30
IUUC-Mtr-058367	Medicago truncatula	60.78	5.00e-155	539.00
IUUC-Mla-059107	Melampsora laricipopulina	26.28	2.00e-37	149.00
IUUC-Mga-059745	Meleagris gallopavo	35.16	2.00e-60	225.00
IUUC-Mvi-060362	Microbotryum violaceum	25.16	2.00e-31	129.00
IUUC-Mdo-062257	Monodelphis domestica	35.63	6.00e-62	230.00
IUUC-Mmu-063546	Mus musculus	33.49	9.00e-56	209.00
IUUC-Mac-065540	Musa acuminata	70.59	0.00e+00	630.00
IUUC-Mpu-066284	Mustela putorius furo	34.61	3.00e-56	211.00
IUUC-Mlu-067241	Myotis lucifugus	35.08	7.00e-57	213.00
IUUC-Nfi-068260	Neosartorya fischeri	30.04	3.00e-42	165.00
IUUC-Ncr-068719	Neurospora crassa	30.14	6.00e-35	140.00
IUUC-Nle-068981	Nomascus leucogenys	34.84	1.00e-53	202.00
IUUC-Opr-071218	Ochotona princeps	32.75	3.00e-52	198.00
IUUC-Ont-071646	Oreochromis niloticus	33.81	7.00e-59	220.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.04	5.00e-65	240.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.08	3.00e-57	214.00
IUUC-Oba-075712	Oryza barthii	86.95	0.00e+00	729.00
IUUC-Obr-076721	Oryza brachyantha	91.76	0.00e+00	819.00
IUUC-Ogu-078977	Oryza glumaepatula	86.48	0.00e+00	725.00
IUUC-Oin-079683	Oryza indica	98.62	0.00e+00	876.00
IUUC-Olo-080291	Oryza longistaminata	74.32	2.00e-149	520.00
IUUC-Ome-081834	Oryza meridionalis	98.36	0.00e+00	856.00
IUUC-Oni-082507	Oryza nivara	95.87	0.00e+00	840.00
IUUC-Opu-083396	Oryza punctata	96.77	0.00e+00	853.00
IUUC-Oru-085220	Oryza rufipogon	95.87	0.00e+00	840.00
IUUC-Osa-085767	Oryza sativa	98.62	0.00e+00	876.00
IUUC-Ola-087420	Oryzias latipes	34.29	1.00e-66	246.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.57	2.00e-63	235.00
IUUC-Oga-088264	Otolemur garnettii	34.37	1.00e-53	203.00
IUUC-Oar-089335	Ovis aries	34.61	7.00e-57	213.00
IUUC-Ptr-091320	Pan troglodytes	34.61	2.00e-54	205.00
IUUC-Pan-092833	Papio anubis	34.84	1.00e-54	206.00
IUUC-Psi-093504	Pelodiscus sinensis	33.41	7.00e-57	213.00
IUUC-Pma-094189	Petromyzon marinus	34.75	9.00e-62	229.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.19	1.00e-43	169.00
IUUC-Ppa-095429	Physcomitrella patens	51.37	8.00e-126	442.00
IUUC-Pfo-096337	Poecilia formosa	35.41	6.00e-66	243.00
IUUC-Pab-097571	Pongo abelii	34.61	2.00e-54	205.00
IUUC-Pop-099977	Populus trichocarpa	64.95	7.00e-166	575.00
IUUC-Pca-100394	Procavia capensis	33.58	4.00e-46	177.00
IUUC-Ppe-101848	Prunus persica	61.50	5.00e-165	572.00
IUUC-Pva-102921	Pteropus vampyrus	33.18	1.00e-23	103.00
IUUC-Pgr-103637	Puccinia graminis	26.23	1.00e-33	136.00
IUUC-Ptt-103781	Puccinia triticina	27.27	4.00e-33	134.00
IUUC-Pte-104135	Pyrenophora teres	30.50	2.00e-42	167.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	30.35	2.00e-44	172.00
IUUC-Rno-105114	Rattus norvegicus	33.73	3.00e-55	208.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.75	9.00e-46	176.00
IUUC-Sha-107122	Sarcophilus harrisii	35.29	3.00e-61	228.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.18	7.00e-41	160.00
IUUC-Spo-108134	Schizosaccharomyces pombe	28.25	4.00e-40	158.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.05	3.00e-43	168.00
IUUC-Smo-108720	Selaginella moellendorffii	49.53	6.00e-120	422.00
IUUC-Sit-110354	Setaria italica	85.91	0.00e+00	763.00
IUUC-Sly-111023	Solanum lycopersicum	57.59	3.00e-151	527.00
IUUC-Stu-112778	Solanum tuberosum	63.84	3.00e-161	560.00
IUUC-Sar-113596	Sorex araneus	31.45	6.00e-42	164.00
IUUC-Sbi-114193	Sorghum bicolor	82.87	0.00e+00	707.00
IUUC-Sre-115002	Sporisorium reilianum	23.60	2.00e-18	86.30
IUUC-Ssc-116066	Sus scrofa	34.61	4.00e-56	211.00
IUUC-Tgu-117048	Taeniopygia guttata	34.93	2.00e-57	214.00
IUUC-Tni-119820	Tetraodon nigroviridis	35.93	4.00e-62	231.00
IUUC-Tca-121605	Theobroma cacao	64.30	3.00e-169	587.00
IUUC-Tre-121947	Trichoderma reesei	27.16	1.00e-35	143.00
IUUC-Tvi-122481	Trichoderma virens	27.14	2.00e-35	142.00
IUUC-Tae-123504	Triticum aestivum	84.95	0.00e+00	761.00
IUUC-Tur-126586	Triticum urartu	84.92	0.00e+00	702.00
IUUC-Tme-126900	Tuber melanosporum	30.86	1.00e-51	196.00
IUUC-Tbe-127736	Tupaia belangeri	35.06	7.00e-21	94.00
IUUC-Ttr-129041	Tursiops truncatus	30.31	6.00e-39	154.00
IUUC-Uma-129628	Ustilago maydis	27.24	3.00e-10	59.30
IUUC-Vpa-130260	Vicugna pacos	34.61	2.00e-56	211.00
IUUC-Vvi-131009	Vitis vinifera	66.97	2.00e-178	617.00
IUUC-Xtr-132083	Xenopus tropicalis	35.65	2.00e-61	228.00
IUUC-Xma-133094	Xiphophorus maculatus	34.05	1.00e-64	239.00
IUUC-Yli-134531	Yarrowia lipolytica	28.02	6.00e-32	130.00
IUUC-Zma-135509	Zea mays	83.33	0.00e+00	743.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence