iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oba-075760

Ensembl Protein ID

OBART06G02890.1

UniProt Accession

A0A0D3GCQ5; A0A0D3GCQ5_9ORYZ

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OBART06G02890	OBART06G02890.1	OBART06G02890.1
OBART06G02890	OBART06G02890.2	OBART06G02890.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.40e-33	112.0	210	251
UBD/Beta-Prp	1.20e-63	216.1	56	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 210  GHQKGVNCVDYftgGDrPYLITGSDDSTAKVWDYQTKSCVQT 251
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 24   llatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrt 117
            ++++ ++g++ +wd++++++++s++  e +v++ kf++++++ v g++D++i+v++++t + v ++++h+d++++++++p+  +++s s+d  
   Q: 56   KILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 149
           479999**************************************************************************************** PP
   S: 118  irvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwd 208
           i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt ++W+l + +   tl g h++ v++++     ++++l++gs+d+t k+wd
   Q: 150  IKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTTKIWSLGSPDPNFTLDG-HQKGVNCVDyfTGGDRPYLITGSDDSTAKVWD 242
           **********9999**********************************************9.*********7445566**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           +qt++cv+tl+ght n++ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +++   + +v g ++++++
   Q: 243  YQTKSCVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKG-SRRMVIGYDEGTIM 323
           **************************************************************99444.45555555555655 PP

Organism

Oryza barthii

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MDLVLSFLPP SSSLPRRARD PIRFASVPRS AHAVAATMPL RLEIKRKFAQ RSERVKILSS 60
LYSGSVCIWD YQSQTMVKSF EVSELPVRSA KFISRKQWVV AGADDMFIRV YNYNTMDKVK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGTAAT AACAAAAATA AATAAAATTA CGCACAAAAC CCCCTCCTCA TCTTGGTGTT 60
TAGTTTAGTC CTTTCCTTCC TCCCACCCTC CTCGTCGCTC CCCCGCCGAG CTCGCGATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	81.50	0.00e+00	1515.00
IUUC-Aml-002154	Ailuropoda melanoleuca	60.12	0.00e+00	1076.00
IUUC-Atr-003090	Amborella trichopoda	77.68	0.00e+00	1457.00
IUUC-Apl-003976	Anas platyrhynchos	60.24	0.00e+00	1080.00
IUUC-Aca-004301	Anolis carolinensis	60.29	0.00e+00	1085.00
IUUC-Aly-006508	Arabidopsis lyrata	80.39	0.00e+00	1511.00
IUUC-Ath-007635	Arabidopsis thaliana	79.48	0.00e+00	1503.00
IUUC-Acl-008237	Aspergillus clavatus	51.37	0.00e+00	879.00
IUUC-Afl-008535	Aspergillus flavus	49.82	0.00e+00	860.00
IUUC-Afu-008845	Aspergillus fumigatus	51.73	0.00e+00	865.00
IUUC-Ani-009135	Aspergillus nidulans	52.07	0.00e+00	863.00
IUUC-Aor-009939	Aspergillus oryzae	49.71	0.00e+00	891.00
IUUC-Ate-010355	Aspergillus terreus	51.71	0.00e+00	856.00
IUUC-Ame-010922	Astyanax mexicanus	54.76	0.00e+00	926.00
IUUC-Bgr-012249	Blumeria graminis	52.03	0.00e+00	867.00
IUUC-Bta-013579	Bos taurus	60.98	0.00e+00	964.00
IUUC-Bci-013866	Botrytis cinerea	52.77	0.00e+00	870.00
IUUC-Bdi-014102	Brachypodium distachyon	94.54	0.00e+00	1660.00
IUUC-Bol-016271	Brassica oleracea	79.48	0.00e+00	1494.00
IUUC-Bra-017758	Brassica rapa	79.08	0.00e+00	1494.00
IUUC-Cel-018387	Caenorhabditis elegans	53.48	0.00e+00	937.00
IUUC-Cja-019145	Callithrix jacchus	60.05	0.00e+00	1077.00
IUUC-Cfa-020564	Canis familiaris	60.17	0.00e+00	1079.00
IUUC-Cpo-022201	Cavia porcellus	60.12	0.00e+00	1077.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	65.54	0.00e+00	1085.00
IUUC-Cho-024454	Choloepus hoffmanni	56.85	0.00e+00	892.00
IUUC-Cin-025681	Ciona intestinalis	58.23	0.00e+00	964.00
IUUC-Csv-026012	Ciona savignyi	57.38	0.00e+00	947.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	47.72	0.00e+00	775.00
IUUC-Cne-026986	Cryptococcus neoformans	47.95	0.00e+00	835.00
IUUC-Cme-027219	Cyanidioschyzon merolae	50.87	0.00e+00	860.00
IUUC-Dre-027846	Danio rerio	60.34	0.00e+00	1080.00
IUUC-Dse-031268	Dothistroma septosporum	50.79	0.00e+00	855.00
IUUC-Dme-031791	Drosophila melanogaster	56.39	0.00e+00	993.00
IUUC-Eca-034180	Equus caballus	58.60	0.00e+00	1034.00
IUUC-Eeu-035086	Erinaceus europaeus	50.43	3.00e-124	439.00
IUUC-Fca-036265	Felis catus	60.17	0.00e+00	1078.00
IUUC-Fal-037202	Ficedula albicollis	60.98	0.00e+00	1065.00
IUUC-Fox-037711	Fusarium oxysporum	52.09	0.00e+00	825.00
IUUC-Fso-038268	Fusarium solani	51.09	0.00e+00	830.00
IUUC-Gmo-039046	Gadus morhua	61.12	0.00e+00	1065.00
IUUC-Ggr-039863	Gaeumannomyces graminis	50.92	0.00e+00	845.00
IUUC-Gga-041112	Gallus gallus	58.23	0.00e+00	1087.00
IUUC-Gac-041733	Gasterosteus aculeatus	60.25	0.00e+00	1034.00
IUUC-Gma-044126	Glycine max	83.53	0.00e+00	1582.00
IUUC-Ggo-044984	Gorilla gorilla	60.05	0.00e+00	1077.00
IUUC-Hsa-046698	Homo sapiens	60.05	0.00e+00	1078.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	60.12	0.00e+00	1074.00
IUUC-Kpa-049265	Komagataella pastoris	50.64	0.00e+00	818.00
IUUC-Lch-050473	Latimeria chalumnae	57.16	0.00e+00	1084.00
IUUC-Loc-052675	Lepisosteus oculatus	60.34	0.00e+00	1080.00
IUUC-Lma-053218	Leptosphaeria maculans	51.53	0.00e+00	839.00
IUUC-Laf-053757	Loxodonta africana	58.60	0.00e+00	1074.00
IUUC-Mcc-054859	Macaca mulatta	60.05	0.00e+00	1077.00
IUUC-Meu-056174	Macropus eugenii	52.13	5.00e-110	391.00
IUUC-Mor-057264	Magnaporthe oryzae	50.98	0.00e+00	832.00
IUUC-Mpo-057538	Magnaporthe poae	50.67	0.00e+00	852.00
IUUC-Mtr-058618	Medicago truncatula	82.38	0.00e+00	1531.00
IUUC-Mla-058937	Melampsora laricipopulina	51.30	0.00e+00	853.00
IUUC-Mga-059875	Meleagris gallopavo	58.32	0.00e+00	1086.00
IUUC-Mvi-060240	Microbotryum violaceum	46.78	0.00e+00	857.00
IUUC-Mmr-061261	Microcebus murinus	60.17	0.00e+00	1078.00
IUUC-Mdo-062076	Monodelphis domestica	60.41	0.00e+00	1085.00
IUUC-Mmu-063324	Mus musculus	60.17	0.00e+00	1079.00
IUUC-Mac-064636	Musa acuminata	83.55	0.00e+00	1557.00
IUUC-Mpu-065961	Mustela putorius furo	60.17	0.00e+00	1078.00
IUUC-Mlu-067059	Myotis lucifugus	59.32	0.00e+00	1065.00
IUUC-Nfi-068277	Neosartorya fischeri	51.44	0.00e+00	854.00
IUUC-Ncr-068659	Neurospora crassa	51.84	0.00e+00	867.00
IUUC-Nle-069034	Nomascus leucogenys	58.67	0.00e+00	1077.00
IUUC-Opr-070334	Ochotona princeps	60.38	0.00e+00	966.00
IUUC-Ont-071563	Oreochromis niloticus	60.86	0.00e+00	1071.00
IUUC-Oan-073416	Ornithorhynchus anatinus	60.73	0.00e+00	1051.00
IUUC-Ocu-074522	Oryctolagus cuniculus	60.17	0.00e+00	1075.00
IUUC-Ogl-077450	Oryza glaberrima	98.57	0.00e+00	1760.00
IUUC-Ogu-078994	Oryza glumaepatula	99.56	0.00e+00	1801.00
IUUC-Oin-079211	Oryza indica	98.44	0.00e+00	1727.00
IUUC-Olo-080731	Oryza longistaminata	98.23	0.00e+00	1743.00
IUUC-Ome-081762	Oryza meridionalis	92.14	0.00e+00	1620.00
IUUC-Oni-082324	Oryza nivara	100.00	0.00e+00	1778.00
IUUC-Opu-083433	Oryza punctata	99.30	0.00e+00	1664.00
IUUC-Oru-084829	Oryza rufipogon	99.89	0.00e+00	1774.00
IUUC-Osa-086026	Oryza sativa	98.89	0.00e+00	1748.00
IUUC-Ola-087245	Oryzias latipes	60.69	0.00e+00	1071.00
IUUC-Olu-087655	Ostreococcus lucimarinus	64.36	0.00e+00	1108.00
IUUC-Oga-088163	Otolemur garnettii	56.34	0.00e+00	1024.00
IUUC-Oar-089842	Ovis aries	60.05	0.00e+00	1077.00
IUUC-Ptr-090501	Pan troglodytes	60.05	0.00e+00	1077.00
IUUC-Pan-092011	Papio anubis	60.05	0.00e+00	1077.00
IUUC-Psi-093308	Pelodiscus sinensis	60.41	0.00e+00	1082.00
IUUC-Pma-094695	Petromyzon marinus	56.96	0.00e+00	948.00
IUUC-Pno-094785	Phaeosphaeria nodorum	58.76	2.00e-103	369.00
IUUC-Ppa-095911	Physcomitrella patens	75.39	0.00e+00	1395.00
IUUC-Pfo-096587	Poecilia formosa	60.74	0.00e+00	1075.00
IUUC-Pab-097926	Pongo abelii	57.99	0.00e+00	1008.00
IUUC-Pop-099634	Populus trichocarpa	82.16	0.00e+00	1528.00
IUUC-Pca-100965	Procavia capensis	59.15	0.00e+00	1039.00
IUUC-Ppe-101470	Prunus persica	82.54	0.00e+00	1579.00
IUUC-Pgr-103453	Puccinia graminis	50.86	0.00e+00	863.00
IUUC-Ptt-103868	Puccinia triticina	51.04	0.00e+00	862.00
IUUC-Pte-104274	Pyrenophora teres	52.20	0.00e+00	869.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.36	0.00e+00	847.00
IUUC-Rno-105979	Rattus norvegicus	51.42	0.00e+00	776.00
IUUC-Sce-106269	Saccharomyces cerevisiae	46.22	0.00e+00	724.00
IUUC-Sha-106905	Sarcophilus harrisii	58.81	0.00e+00	1082.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.39	0.00e+00	741.00
IUUC-Spo-108299	Schizosaccharomyces pombe	44.81	0.00e+00	762.00
IUUC-Smo-108695	Selaginella moellendorffii	80.02	0.00e+00	1374.00
IUUC-Sit-110239	Setaria italica	93.30	0.00e+00	1741.00
IUUC-Sly-111525	Solanum lycopersicum	81.07	0.00e+00	1516.00
IUUC-Stu-112906	Solanum tuberosum	81.31	0.00e+00	1418.00
IUUC-Sar-113472	Sorex araneus	56.29	0.00e+00	761.00
IUUC-Sre-115040	Sporisorium reilianum	50.36	0.00e+00	849.00
IUUC-Ssc-115593	Sus scrofa	60.05	0.00e+00	1078.00
IUUC-Tgu-117239	Taeniopygia guttata	60.48	0.00e+00	1084.00
IUUC-Tru-118025	Takifugu rubripes	60.42	0.00e+00	1065.00
IUUC-Tni-120142	Tetraodon nigroviridis	60.44	0.00e+00	1062.00
IUUC-Tca-121613	Theobroma cacao	84.70	0.00e+00	1605.00
IUUC-Tre-122072	Trichoderma reesei	51.48	0.00e+00	857.00
IUUC-Tvi-122546	Trichoderma virens	51.11	0.00e+00	841.00
IUUC-Tae-125292	Triticum aestivum	91.64	0.00e+00	1705.00
IUUC-Tur-126283	Triticum urartu	82.48	0.00e+00	1517.00
IUUC-Tme-127041	Tuber melanosporum	52.70	0.00e+00	884.00
IUUC-Ttr-129294	Tursiops truncatus	59.93	0.00e+00	1075.00
IUUC-Uma-129351	Ustilago maydis	49.51	0.00e+00	847.00
IUUC-Vda-129716	Verticillium dahliae	51.97	0.00e+00	875.00
IUUC-Vpa-130037	Vicugna pacos	50.97	4.00e-130	458.00
IUUC-Vvi-131689	Vitis vinifera	86.87	0.00e+00	1542.00
IUUC-Xtr-132633	Xenopus tropicalis	60.05	0.00e+00	1073.00
IUUC-Xma-133347	Xiphophorus maculatus	60.99	0.00e+00	1077.00
IUUC-Yli-134455	Yarrowia lipolytica	49.24	0.00e+00	777.00
IUUC-Zma-135789	Zea mays	90.96	0.00e+00	1702.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence