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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105817
UUCD1 version UUC-RaN-00083
Ensembl Protein ID ENSRNOP00000018717.4
UniProt Accession B5DFJ4; B5DFJ4_RAT
Genbank Protein ID AAI69083.1; EDL79900.1
Protein Name VPS18 CORVET/HOPS core subunit; Vacuolar protein sorting 18 (Yeast) (Predicted); Vps18 protein
Genbank Nucleotide ID AC132987; CH473949
Gene Name Vps18; Vps18_predicted; rCG_27123
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000013689.5 ENSRNOT00000018717.5 ENSRNOP00000018717.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IIDHINT
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 95.17 0.00e+00 1862.00 IUUC-Hsa-046635
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MASILDEYED SLSRSAVLQT GCPSVGIPHS GYVNAHLEKE VPIFTKQRID FTPSERITSL 60
VVSCSQLCMS LGKDTLLRID LGKASEPNRV ELGRKDDAKV HKMFLDHTGS HLLVALSSTE 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105817|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTCAGCTGAG CTGCCTGGGT GAGGTTACGA TCACCTGGGA TCTGCTAAGG GGAGCCTGTA 60
ATCTCTTGGG ACTGGAGCTG GGGTGCCAAA CTGCGCCATA TTCTAGTGGG GGCTCCTCGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105817|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR007810--Pep3_Vps18
IPR011990--TPR-like_helical_dom
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50236--CHCR
Pfam

PF00637--Clathrin
PF05131--Pep3_Vps18
Gene Ontology

GO:0005884--C:actin filament
GO:0030123--C:AP-3 adaptor complex
GO:0033263--C:CORVET complex
GO:0005769--C:early endosome
GO:0005768--C:endosome
GO:0030897--C:HOPS complex
GO:0005770--C:late endosome
GO:0005765--C:lysosomal membrane
GO:0030674--F:protein binding, bridging
GO:0007032--P:endosome organization
GO:0008333--P:endosome to lysosome transport
GO:0006886--P:intracellular protein transport
GO:0007040--P:lysosome organization
GO:0035542--P:regulation of SNARE complex assembly
GO:0006904--P:vesicle docking involved in exocytosis
GO:0046718--P:viral entry into host cell
KEGG rno:296083
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000419 Aegilops tauschii 31.90 3.00e-107 382.00
IUUC-Aml-001240 Ailuropoda melanoleuca 95.48 0.00e+00 1858.00
IUUC-Atr-003125 Amborella trichopoda 32.73 1.00e-121 431.00
IUUC-Apl-004181 Anas platyrhynchos 71.87 0.00e+00 1455.00
IUUC-Aca-004437 Anolis carolinensis 71.25 0.00e+00 1429.00
IUUC-Aly-006046 Arabidopsis lyrata 33.43 6.00e-134 472.00
IUUC-Ath-006932 Arabidopsis thaliana 33.68 2.00e-133 469.00
IUUC-Ago-007800 Ashbya gossypii 23.40 2.00e-55 210.00
IUUC-Acl-008035 Aspergillus clavatus 31.12 5.00e-111 395.00
IUUC-Afl-008714 Aspergillus flavus 30.73 7.00e-108 385.00
IUUC-Afu-009063 Aspergillus fumigatus 31.75 6.00e-111 395.00
IUUC-Ani-009384 Aspergillus nidulans 31.89 7.00e-113 401.00
IUUC-Ang-009507 Aspergillus niger 32.19 6.00e-109 389.00
IUUC-Aor-010094 Aspergillus oryzae 30.73 2.00e-107 384.00
IUUC-Ate-010421 Aspergillus terreus 31.58 8.00e-96 345.00
IUUC-Ame-011797 Astyanax mexicanus 65.34 0.00e+00 1285.00
IUUC-Bgr-012107 Blumeria graminis 32.24 2.00e-110 393.00
IUUC-Bta-012339 Bos taurus 95.27 0.00e+00 1865.00
IUUC-Bci-013895 Botrytis cinerea 33.08 2.00e-120 427.00
IUUC-Bdi-014554 Brachypodium distachyon 33.92 3.00e-125 442.00
IUUC-Bol-015270 Brassica oleracea 33.92 6.00e-135 475.00
IUUC-Bra-017424 Brassica rapa 33.37 1.00e-128 454.00
IUUC-Cel-018455 Caenorhabditis elegans 25.95 3.00e-85 310.00
IUUC-Cja-019629 Callithrix jacchus 93.94 0.00e+00 1848.00
IUUC-Cfa-020425 Canis familiaris 95.58 0.00e+00 1850.00
IUUC-Cpo-021349 Cavia porcellus 94.56 0.00e+00 1826.00
IUUC-Cre-022799 Chlamydomonas reinhardtii 29.82 4.00e-28 120.00
IUUC-Csa-023559 Chlorocebus sabaeus 94.96 0.00e+00 1857.00
IUUC-Cho-024862 Choloepus hoffmanni 88.10 0.00e+00 1378.00
IUUC-Cin-025599 Ciona intestinalis 41.68 2.00e-175 609.00
IUUC-Csv-026152 Ciona savignyi 43.15 0.00e+00 757.00
IUUC-Cgl-026551 Colletotrichum gloeosporioides 31.68 2.00e-110 393.00
IUUC-Cne-026907 Cryptococcus neoformans 31.01 6.00e-111 395.00
IUUC-Dre-027747 Danio rerio 65.71 0.00e+00 1327.00
IUUC-Dno-029668 Dasypus novemcinctus 94.56 0.00e+00 1837.00
IUUC-Dor-030404 Dipodomys ordii 89.11 0.00e+00 1720.00
IUUC-Dse-031345 Dothistroma septosporum 33.80 2.00e-121 430.00
IUUC-Dme-031711 Drosophila melanogaster 34.45 1.00e-146 514.00
IUUC-Ete-032308 Echinops telfairi 88.61 0.00e+00 904.00
IUUC-Eca-033637 Equus caballus 95.68 0.00e+00 1870.00
IUUC-Eeu-035151 Erinaceus europaeus 94.74 0.00e+00 1379.00
IUUC-Fca-035585 Felis catus 95.17 0.00e+00 1842.00
IUUC-Fal-037122 Ficedula albicollis 73.12 0.00e+00 1458.00
IUUC-Fox-038030 Fusarium oxysporum 33.61 3.00e-118 419.00
IUUC-Fso-038426 Fusarium solani 33.50 7.00e-125 441.00
IUUC-Gmo-038784 Gadus morhua 65.92 0.00e+00 1291.00
IUUC-Ggr-039973 Gaeumannomyces graminis 33.78 2.00e-121 430.00
IUUC-Gga-040692 Gallus gallus 73.31 0.00e+00 1481.00
IUUC-Gac-041868 Gasterosteus aculeatus 64.77 0.00e+00 1285.00
IUUC-Gma-044274 Glycine max 33.88 4.00e-134 472.00
IUUC-Ggo-045053 Gorilla gorilla 94.96 0.00e+00 1849.00
IUUC-Hsa-046635 Homo sapiens 95.17 0.00e+00 1852.00
IUUC-Hvu-047361 Hordeum vulgare 33.71 1.00e-124 441.00
IUUC-Itr-048868 Ictidomys tridecemlineatus 95.48 0.00e+00 1850.00
IUUC-Kpa-049270 Komagataella pastoris 24.21 5.00e-76 279.00
IUUC-Lch-050188 Latimeria chalumnae 67.85 0.00e+00 1199.00
IUUC-Lpe-051026 Leersia perrieri 34.45 7.00e-129 455.00
IUUC-Loc-051821 Lepisosteus oculatus 66.60 0.00e+00 1315.00
IUUC-Lma-053178 Leptosphaeria maculans 34.46 1.00e-99 357.00
IUUC-Laf-053552 Loxodonta africana 94.76 0.00e+00 1843.00
IUUC-Mcc-054667 Macaca mulatta 95.07 0.00e+00 1850.00
IUUC-Meu-056422 Macropus eugenii 91.29 0.00e+00 855.00
IUUC-Mor-056981 Magnaporthe oryzae 33.06 3.00e-118 419.00
IUUC-Mtr-058703 Medicago truncatula 34.61 9.00e-130 457.00
IUUC-Mla-059088 Melampsora laricipopulina 34.71 3.00e-92 332.00
IUUC-Mga-059798 Meleagris gallopavo 73.00 0.00e+00 1475.00
IUUC-Mvi-060404 Microbotryum violaceum 35.20 3.00e-120 426.00
IUUC-Mmr-061630 Microcebus murinus 95.38 0.00e+00 1853.00
IUUC-Mdo-062354 Monodelphis domestica 91.78 0.00e+00 1803.00
IUUC-Mmu-063199 Mus musculus 98.25 0.00e+00 1910.00
IUUC-Mac-065595 Musa acuminata 35.31 1.00e-111 397.00
IUUC-Mpu-066596 Mustela putorius furo 95.17 0.00e+00 1859.00
IUUC-Mlu-067455 Myotis lucifugus 95.38 0.00e+00 1847.00
IUUC-Nfi-068565 Neosartorya fischeri 31.75 4.00e-112 399.00
IUUC-Ncr-068748 Neurospora crassa 32.87 1.00e-123 437.00
IUUC-Nle-068979 Nomascus leucogenys 95.34 0.00e+00 1659.00
IUUC-Opr-070711 Ochotona princeps 93.73 0.00e+00 1830.00
IUUC-Ont-072603 Oreochromis niloticus 64.80 0.00e+00 1301.00
IUUC-Oan-073136 Ornithorhynchus anatinus 84.11 0.00e+00 810.00
IUUC-Ocu-074496 Oryctolagus cuniculus 95.58 0.00e+00 1857.00
IUUC-Oba-075933 Oryza barthii 33.00 9.00e-110 391.00
IUUC-Obr-076290 Oryza brachyantha 33.88 4.00e-130 459.00
IUUC-Ogu-078728 Oryza glumaepatula 33.00 7.00e-110 391.00
IUUC-Oin-079954 Oryza indica 33.23 2.00e-121 430.00
IUUC-Olo-081033 Oryza longistaminata 31.92 1.00e-104 374.00
IUUC-Ome-081797 Oryza meridionalis 32.97 3.00e-116 413.00
IUUC-Oni-082802 Oryza nivara 33.00 7.00e-110 391.00
IUUC-Opu-083595 Oryza punctata 35.34 1.00e-130 461.00
IUUC-Oru-084199 Oryza rufipogon 33.00 7.00e-110 391.00
IUUC-Osa-085349 Oryza sativa 33.68 5.00e-129 455.00
IUUC-Ola-087482 Oryzias latipes 64.47 0.00e+00 1289.00
IUUC-Olu-087797 Ostreococcus lucimarinus 24.92 1.00e-64 241.00
IUUC-Oga-088817 Otolemur garnettii 95.17 0.00e+00 1864.00
IUUC-Oar-090350 Ovis aries 93.32 0.00e+00 1432.00
IUUC-Ptr-090999 Pan troglodytes 94.86 0.00e+00 1847.00
IUUC-Pan-092704 Papio anubis 95.07 0.00e+00 1850.00
IUUC-Psi-093529 Pelodiscus sinensis 72.79 0.00e+00 1451.00
IUUC-Pma-094400 Petromyzon marinus 56.42 0.00e+00 1079.00
IUUC-Pno-094875 Phaeosphaeria nodorum 32.89 2.00e-118 420.00
IUUC-Ppa-095231 Physcomitrella patens 33.56 6.00e-128 452.00
IUUC-Pfo-096967 Poecilia formosa 64.29 0.00e+00 1290.00
IUUC-Pab-098300 Pongo abelii 94.86 0.00e+00 1845.00
IUUC-Pop-098966 Populus trichocarpa 34.58 5.00e-140 492.00
IUUC-Pca-100643 Procavia capensis 93.86 0.00e+00 1738.00
IUUC-Ppe-101589 Prunus persica 34.19 8.00e-135 474.00
IUUC-Pva-102766 Pteropus vampyrus 94.86 0.00e+00 1805.00
IUUC-Pgr-103330 Puccinia graminis 30.51 2.00e-108 387.00
IUUC-Ptt-103809 Puccinia triticina 31.69 1.00e-91 331.00
IUUC-Pte-104319 Pyrenophora teres 32.31 7.00e-117 415.00
IUUC-Pyt-104798 Pyrenophora triticirepentis 31.05 4.00e-104 372.00
IUUC-Sce-106255 Saccharomyces cerevisiae 23.25 3.00e-42 167.00
IUUC-Sha-107479 Sarcophilus harrisii 91.93 0.00e+00 1790.00
IUUC-Sja-107976 Schizosaccharomyces japonicus 24.69 9.00e-68 251.00
IUUC-Spo-108146 Schizosaccharomyces pombe 26.32 5.00e-70 259.00
IUUC-Ssl-108663 Sclerotinia sclerotiorum 32.74 1.00e-110 394.00
IUUC-Smo-109585 Selaginella moellendorffii 34.23 2.00e-119 423.00
IUUC-Sit-110275 Setaria italica 34.39 4.00e-128 452.00
IUUC-Sly-111073 Solanum lycopersicum 34.81 1.00e-133 471.00
IUUC-Stu-112392 Solanum tuberosum 28.16 7.00e-14 70.50
IUUC-Sar-113718 Sorex araneus 90.86 0.00e+00 1754.00
IUUC-Sbi-114080 Sorghum bicolor 34.67 1.00e-132 468.00
IUUC-Sre-115160 Sporisorium reilianum 33.44 1.00e-123 438.00
IUUC-Ssc-115997 Sus scrofa 95.07 0.00e+00 1852.00
IUUC-Tgu-116904 Taeniopygia guttata 72.75 0.00e+00 1316.00
IUUC-Tru-117946 Takifugu rubripes 63.99 0.00e+00 1295.00
IUUC-Tni-119692 Tetraodon nigroviridis 64.29 0.00e+00 1288.00
IUUC-Tca-121455 Theobroma cacao 33.51 4.00e-134 472.00
IUUC-Tre-122128 Trichoderma reesei 31.95 9.00e-120 424.00
IUUC-Tvi-122657 Trichoderma virens 32.99 1.00e-121 430.00
IUUC-Tae-125953 Triticum aestivum 34.56 2.00e-125 443.00
IUUC-Tur-126110 Triticum urartu 30.71 1.00e-92 334.00
IUUC-Tme-127173 Tuber melanosporum 30.57 1.00e-102 367.00
IUUC-Ttr-128420 Tursiops truncatus 94.96 0.00e+00 1848.00
IUUC-Uma-129580 Ustilago maydis 33.19 1.00e-122 434.00
IUUC-Vda-129790 Verticillium dahliae 30.88 2.00e-108 387.00
IUUC-Vvi-131095 Vitis vinifera 33.54 8.00e-131 461.00
IUUC-Xtr-131906 Xenopus tropicalis 67.90 0.00e+00 1344.00
IUUC-Xma-134197 Xiphophorus maculatus 64.50 0.00e+00 1291.00
IUUC-Yli-134617 Yarrowia lipolytica 27.58 7.00e-95 342.00
IUUC-Zma-134979 Zea mays 32.15 2.00e-101 363.00
Created Date 25-Jun-2017

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