iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cpo-021667

Ensembl Protein ID

ENSCPOP00000021052.1

UniProt Accession

H0WDH9; H0WDH9_CAVPO

Genbank Protein ID

ENSCPOP00000021052

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAKN02044549

Gene Name

LDB3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCPOG00000025115.1	ENSCPOT00000024817.1	ENSCPOP00000021052.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UIM	37.66	2.00e-05	48.10	IUUC-Ath-007530

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Cavia porcellus

Protein Sequence
(Fasta)

MSYSVTLTGP GPWGFRLQGG KDFNMPLTIS RITPGSKAAQ SQLSQGDLVV AIDGVSTDTM 60
THLEAQNKIK SASYNLSLTL QKSKRPITVS TAAPPVQSPL PVIPHQKEPA LDTNGSLVAP 120

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Nucleotide Sequence
(Fasta)

ATGTCTTATA GCGTGACCCT GACAGGGCCT GGACCCTGGG GCTTCCGGCT CCAGGGGGGC 60
AAGGACTTCA ATATGCCCCT CACCATCTCT CGGGTGAGTG TGCTGCGCCC GAAGCCTGGG 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR031847--DUF4749
IPR001478--PDZ
IPR006643--Zasp-like_motif
IPR001781--Znf_LIM

PROSITE

PS00478--LIM_DOMAIN_1
PS50023--LIM_DOMAIN_2
PS50106--PDZ

Pfam

PF15936--DUF4749
PF00412--LIM
PF00595--PDZ

SMART

SM00132--LIM
SM00228--PDZ
SM00735--ZM

Gene Ontology

GO:0005856--C:cytoskeleton
GO:0030018--C:Z disc
GO:0008270--F:zinc ion binding
GO:0045214--P:sarcomere organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000888	Aegilops tauschii	37.66	5.00e-07	48.90
IUUC-Atr-002465	Amborella trichopoda	35.06	4.00e-08	52.80
IUUC-Aly-005589	Arabidopsis lyrata	33.33	8.00e-07	48.50
IUUC-Ath-007530	Arabidopsis thaliana	37.66	2.00e-06	47.40
IUUC-Ame-011762	Astyanax mexicanus	27.66	8.00e-23	102.00
IUUC-Bdi-014217	Brachypodium distachyon	38.96	3.00e-07	50.10
IUUC-Bol-015361	Brassica oleracea	37.68	3.00e-06	47.00
IUUC-Bra-016788	Brassica rapa	32.43	2.20e-02	33.10
IUUC-Dre-027455	Danio rerio	27.66	2.00e-22	101.00
IUUC-Dse-031181	Dothistroma septosporum	31.78	2.00e-17	84.70
IUUC-Dme-031605	Drosophila melanogaster	28.81	6.00e-22	100.00
IUUC-Fal-037626	Ficedula albicollis	62.90	0.00e+00	813.00
IUUC-Gga-040724	Gallus gallus	29.26	7.00e-23	102.00
IUUC-Gma-042981	Glycine max	40.00	5.00e-08	52.40
IUUC-Hvu-047787	Hordeum vulgare	34.15	1.00e-06	48.50
IUUC-Lpe-050858	Leersia perrieri	38.96	2.00e-07	50.10
IUUC-Loc-052468	Lepisosteus oculatus	28.95	2.00e-22	101.00
IUUC-Mtr-058103	Medicago truncatula	36.99	2.00e-06	47.00
IUUC-Mla-059141	Melampsora laricipopulina	27.52	8.00e-23	102.00
IUUC-Mmr-060595	Microcebus murinus	91.57	3.00e-160	558.00
IUUC-Mac-065516	Musa acuminata	30.59	1.00e-03	35.80
IUUC-Ncr-068674	Neurospora crassa	29.91	2.00e-14	74.70
IUUC-Oba-075285	Oryza barthii	38.96	2.00e-07	50.40
IUUC-Obr-076433	Oryza brachyantha	38.96	3.00e-07	50.10
IUUC-Ogl-077044	Oryza glaberrima	38.96	2.00e-07	50.40
IUUC-Ogu-078868	Oryza glumaepatula	38.96	2.00e-07	50.40
IUUC-Oin-079737	Oryza indica	38.96	1.00e-07	52.00
IUUC-Olo-080337	Oryza longistaminata	38.96	2.00e-07	51.60
IUUC-Oni-082197	Oryza nivara	38.96	2.00e-07	50.40
IUUC-Opu-083412	Oryza punctata	34.67	5.00e-07	49.70
IUUC-Oru-085246	Oryza rufipogon	38.96	2.00e-07	50.40
IUUC-Osa-086082	Oryza sativa	38.96	2.00e-07	50.40
IUUC-Olu-087728	Ostreococcus lucimarinus	30.16	5.60e-01	28.90
IUUC-Pno-094933	Phaeosphaeria nodorum	30.83	7.00e-15	75.90
IUUC-Ppa-096027	Physcomitrella patens	34.15	7.00e-08	52.00
IUUC-Pfo-097294	Poecilia formosa	76.25	1.00e-120	426.00
IUUC-Pab-098372	Pongo abelii	28.72	6.00e-22	99.40
IUUC-Pop-098996	Populus trichocarpa	32.14	8.00e-08	51.60
IUUC-Ptt-104003	Puccinia triticina	26.72	4.00e-05	43.10
IUUC-Pte-104256	Pyrenophora teres	27.50	2.00e-13	70.90
IUUC-Pyt-104720	Pyrenophora triticirepentis	27.73	1.00e-12	67.40
IUUC-Smo-108841	Selaginella moellendorffii	33.33	3.00e-06	45.80
IUUC-Sit-110147	Setaria italica	37.66	5.00e-07	49.30
IUUC-Sly-111689	Solanum lycopersicum	36.99	9.00e-08	51.60
IUUC-Stu-112186	Solanum tuberosum	36.99	9.00e-08	51.60
IUUC-Sar-113038	Sorex araneus	81.88	2.00e-130	459.00
IUUC-Sbi-114441	Sorghum bicolor	38.96	8.00e-08	52.00
IUUC-Sre-115199	Sporisorium reilianum	28.16	1.00e-22	102.00
IUUC-Ssc-116398	Sus scrofa	28.72	5.00e-22	99.80
IUUC-Tgu-116824	Taeniopygia guttata	72.84	2.00e-144	505.00
IUUC-Tca-121863	Theobroma cacao	30.43	5.00e-06	45.80
IUUC-Tae-125101	Triticum aestivum	38.96	1.00e-07	50.80
IUUC-Tur-126006	Triticum urartu	37.66	6.00e-07	48.90
IUUC-Tbe-127395	Tupaia belangeri	89.20	7.00e-119	420.00
IUUC-Uma-129653	Ustilago maydis	30.10	7.00e-24	106.00
IUUC-Vpa-130784	Vicugna pacos	90.54	1.00e-117	417.00
IUUC-Vvi-131286	Vitis vinifera	36.99	9.00e-08	51.60
IUUC-Xma-134125	Xiphophorus maculatus	74.34	2.00e-118	420.00
IUUC-Zma-135630	Zea mays	37.66	5.00e-07	49.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence