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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Mmu-063258
Ensembl Protein ID ENSMUSP00000030134.8
UniProt Accession P54728; Q3TUA4; RD23B_MOUSE
Genbank Protein ID CAA63146.1; BAE29298.1; BAE36067.1; BAE36071.1; BAE36124.1; CAM13976.1; AAH27747.1
Protein Name UV excision repair protein RAD23 homolog B; XP-C repair-complementing complex 58 kDa protein
Genbank Nucleotide ID X92411; AK150089; AK160880; AK160890; AK160973; AL683890; BC027747
Gene Name Rad23b; Mhr23b
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000028426.10 ENSMUST00000030134.8 ENSMUSP00000030134.8
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemicroRNATRANSFACRepTar
miRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusPHOSIDA
mUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
UBD/Alpha-Helix/UBA UBA 12815074; 15336624
ULD/UDP/UBQ/UBQ_PIM UBQ_PIM 12815074; 12826399; 15336624
Classification
Family E-value Score Start End
UBD/Alpha-Helix/UBA 3.60e-19 69.4 190 227
ULD/UDP/UBQ/UBQ_PIM 2.90e-27 95.5 1 78
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
    +e ++ ++++MG++re+++ aLra++nn+++AveyLl
   Q: 190 YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 227
    5789********************************95 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
    m++t+ktl++++f++++++++tv++lKeki++e+g +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGkdaFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
    99*************************************************************************997 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, Xpa, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the Xpc:Rad23b dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. Xpc:Rad23b contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. Xpc:Rad23bB induces a bend in DNA upon binding. Xpc:Rad23b stimulates the activity of DNA glycosylases Tdg and Smug1 (By similarity).
The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, Xpa, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the Xpc:Rad23b dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. Xpc:Rad23b contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. Xpc:Rad23bB induces a bend in DNA upon binding. Xpc:Rad23b stimulates the activity of DNA glycosylases Tdg and Smug1 (By similarity).
Protein Sequence
(Fasta)
MQVTLKTLQQ QTFKIDIDPE ETVKALKEKI ESEKGKDAFP VAGQKLIYAG KILSDDTALK 60
EYKIDEKNFV VVMVTKPKAV TTAVPATTQP SSTPSPTAVS SSPAVAAAQA PAPTPALPPT 120
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Protein Fasta Sequence



>IUUC-Mmu-063258|UBD,UBA;ULD,UBQ_PIM|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGTGGGGGAG GGGTCACGTC TCGGCGAGTC ACGGTGATGG CGGCCACCAT CCTGTGGTGA 60
GGTAGCGGGT TCTCTGCGTC TCTCGGGGAG TCCCTCGCGC CTCCTGCGGG CCCAGTGGCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063258|UBD,UBA;ULD,UBQ_PIM|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0647--Proteasome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0000502--C:proteasome complex
GO:0071942--C:XPC complex
GO:0003684--F:damaged DNA binding
GO:0031593--F:polyubiquitin binding
GO:0006974--P:cellular response to DNA damage stimulus
GO:0048568--P:embryonic organ development
GO:0006289--P:nucleotide-excision repair
GO:0000715--P:nucleotide-excision repair, DNA damage recognition
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

KEGG mmu:19359
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001195 Ailuropoda melanoleuca 87.16 6.00e-91 327.00
IUUC-Apl-003371 Anas platyrhynchos 70.19 6.00e-119 420.00
IUUC-Aca-004599 Anolis carolinensis 74.65 7.00e-125 440.00
IUUC-Aly-005498 Arabidopsis lyrata 39.15 4.00e-40 158.00
IUUC-Ath-006676 Arabidopsis thaliana 39.63 1.00e-41 164.00
IUUC-Acl-008212 Aspergillus clavatus 43.75 2.00e-18 86.70
IUUC-Afl-008605 Aspergillus flavus 41.96 8.00e-19 88.20
IUUC-Afu-008877 Aspergillus fumigatus 43.97 6.00e-18 85.10
IUUC-Aor-010032 Aspergillus oryzae 41.96 1.00e-18 87.40
IUUC-Ate-010458 Aspergillus terreus 39.61 1.00e-30 127.00
IUUC-Ame-011107 Astyanax mexicanus 62.00 4.00e-55 208.00
IUUC-Bgr-012056 Blumeria graminis 34.78 4.00e-24 105.00
IUUC-Bta-012922 Bos taurus 85.82 8.00e-129 453.00
IUUC-Bdi-014253 Brachypodium distachyon 34.77 4.00e-33 135.00
IUUC-Bol-016493 Brassica oleracea 35.43 6.00e-35 141.00
IUUC-Bra-017582 Brassica rapa 35.80 5.00e-35 141.00
IUUC-Cel-018364 Caenorhabditis elegans 39.58 1.00e-18 87.40
IUUC-Cja-018772 Callithrix jacchus 86.09 1.00e-133 469.00
IUUC-Cfa-020683 Canis familiaris 77.40 6.00e-131 460.00
IUUC-Cpo-022145 Cavia porcellus 84.62 1.00e-137 483.00
IUUC-Cre-022810 Chlamydomonas reinhardtii 38.39 5.00e-29 122.00
IUUC-Csa-023714 Chlorocebus sabaeus 87.77 3.00e-149 521.00
IUUC-Cho-024814 Choloepus hoffmanni 58.65 8.00e-94 337.00
IUUC-Cin-025741 Ciona intestinalis 40.89 6.00e-37 147.00
IUUC-Csv-025823 Ciona savignyi 40.26 1.00e-43 169.00
IUUC-Cgl-026495 Colletotrichum gloeosporioides 52.00 1.00e-16 80.90
IUUC-Cne-027056 Cryptococcus neoformans 46.15 7.00e-15 75.10
IUUC-Cme-027260 Cyanidioschyzon merolae 28.76 3.00e-26 112.00
IUUC-Dre-028369 Danio rerio 69.43 1.00e-82 300.00
IUUC-Dno-029543 Dasypus novemcinctus 83.93 7.00e-131 460.00
IUUC-Dor-031041 Dipodomys ordii 64.36 5.00e-55 208.00
IUUC-Dse-031336 Dothistroma septosporum 45.07 7.00e-17 81.60
IUUC-Dme-032027 Drosophila melanogaster 37.50 5.00e-64 238.00
IUUC-Ete-032583 Echinops telfairi 75.62 3.00e-64 238.00
IUUC-Eca-034243 Equus caballus 91.74 5.00e-93 334.00
IUUC-Eeu-034721 Erinaceus europaeus 86.16 3.00e-72 265.00
IUUC-Fca-035679 Felis catus 86.54 1.00e-130 459.00
IUUC-Fal-037148 Ficedula albicollis 78.74 2.00e-90 325.00
IUUC-Fox-037960 Fusarium oxysporum 41.13 2.00e-15 76.60
IUUC-Fso-038107 Fusarium solani 52.63 1.00e-16 81.30
IUUC-Ggr-040116 Gaeumannomyces graminis 41.78 1.00e-15 77.40
IUUC-Gga-040544 Gallus gallus 71.03 2.00e-121 429.00
IUUC-Gma-043937 Glycine max 36.33 1.00e-39 157.00
IUUC-Ggo-045125 Gorilla gorilla 90.31 3.00e-97 348.00
IUUC-Hsa-046519 Homo sapiens 90.31 3.00e-97 348.00
IUUC-Hvu-047832 Hordeum vulgare 35.16 3.00e-33 135.00
IUUC-Itr-048295 Ictidomys tridecemlineatus 84.62 9.00e-127 446.00
IUUC-Kpa-049314 Komagataella pastoris 35.68 9.00e-29 120.00
IUUC-Lch-050553 Latimeria chalumnae 62.65 7.00e-98 350.00
IUUC-Lpe-051087 Leersia perrieri 34.62 3.00e-35 142.00
IUUC-Loc-051748 Lepisosteus oculatus 73.55 5.00e-75 274.00
IUUC-Lma-053328 Leptosphaeria maculans 48.68 2.00e-13 67.00
IUUC-Laf-054293 Loxodonta africana 87.34 8.00e-118 417.00
IUUC-Mcc-055600 Macaca mulatta 90.07 3.00e-103 368.00
IUUC-Meu-056082 Macropus eugenii 64.18 6.00e-68 251.00
IUUC-Mor-057287 Magnaporthe oryzae 50.00 2.00e-16 80.10
IUUC-Mpo-057609 Magnaporthe poae 41.84 3.00e-15 75.90
IUUC-Mtr-058148 Medicago truncatula 36.47 1.00e-41 164.00
IUUC-Mla-058961 Melampsora laricipopulina 47.86 1.00e-25 110.00
IUUC-Mga-060060 Meleagris gallopavo 45.62 9.00e-16 77.40
IUUC-Mvi-060220 Microbotryum violaceum 43.07 4.00e-21 96.30
IUUC-Mmr-061159 Microcebus murinus 91.97 2.00e-94 339.00
IUUC-Mdo-061967 Monodelphis domestica 86.83 2.00e-85 309.00
IUUC-Mpu-066389 Mustela putorius furo 87.16 2.00e-91 329.00
IUUC-Mlu-067999 Myotis lucifugus 86.04 9.00e-118 416.00
IUUC-Nfi-068390 Neosartorya fischeri 43.06 5.00e-18 85.50
IUUC-Ncr-068685 Neurospora crassa 43.26 3.00e-23 102.00
IUUC-Nle-069655 Nomascus leucogenys 87.29 9.00e-143 499.00
IUUC-Opr-070234 Ochotona princeps 80.25 2.00e-29 123.00
IUUC-Ont-072484 Oreochromis niloticus 58.08 2.00e-106 379.00
IUUC-Oan-073258 Ornithorhynchus anatinus 88.36 2.00e-50 191.00
IUUC-Ocu-074831 Oryctolagus cuniculus 78.66 1.00e-126 446.00
IUUC-Obr-076909 Oryza brachyantha 35.52 2.00e-36 146.00
IUUC-Ogu-078101 Oryza glumaepatula 34.57 5.00e-34 138.00
IUUC-Opu-083789 Oryza punctata 34.55 2.00e-34 140.00
IUUC-Osa-086112 Oryza sativa 33.46 4.00e-33 135.00
IUUC-Ola-086540 Oryzias latipes 63.28 2.00e-64 239.00
IUUC-Olu-087843 Ostreococcus lucimarinus 40.77 1.00e-37 150.00
IUUC-Oga-088023 Otolemur garnettii 85.65 9.00e-135 473.00
IUUC-Oar-089964 Ovis aries 85.79 2.00e-115 408.00
IUUC-Ptr-091165 Pan troglodytes 90.31 6.00e-97 347.00
IUUC-Pan-092009 Papio anubis 87.14 2.00e-142 499.00
IUUC-Psi-093477 Pelodiscus sinensis 80.94 1.00e-85 310.00
IUUC-Pno-095064 Phaeosphaeria nodorum 47.37 8.00e-15 74.70
IUUC-Ppa-095654 Physcomitrella patens 38.04 1.00e-35 143.00
IUUC-Pfo-097385 Poecilia formosa 58.81 1.00e-100 360.00
IUUC-Pab-097868 Pongo abelii 90.31 3.00e-96 345.00
IUUC-Pop-099642 Populus trichocarpa 35.33 3.00e-55 208.00
IUUC-Pca-100652 Procavia capensis 88.94 3.00e-66 245.00
IUUC-Pva-102137 Pteropus vampyrus 91.60 9.00e-98 350.00
IUUC-Pte-104303 Pyrenophora teres 46.62 9.00e-20 91.30
IUUC-Pyt-104580 Pyrenophora triticirepentis 46.31 1.00e-19 90.50
IUUC-Rno-104844 Rattus norvegicus 96.63 2.00e-165 575.00
IUUC-Sce-106214 Saccharomyces cerevisiae 35.82 2.00e-13 70.10
IUUC-Sha-107073 Sarcophilus harrisii 87.65 4.00e-86 311.00
IUUC-Ssl-108382 Sclerotinia sclerotiorum 36.09 3.00e-20 92.80
IUUC-Sar-112925 Sorex araneus 80.88 1.00e-85 310.00
IUUC-Sbi-113871 Sorghum bicolor 35.27 7.00e-33 134.00
IUUC-Sre-114894 Sporisorium reilianum 52.46 3.00e-11 62.80
IUUC-Ssc-116329 Sus scrofa 88.70 1.00e-133 469.00
IUUC-Tgu-116918 Taeniopygia guttata 72.01 2.00e-130 458.00
IUUC-Tru-118651 Takifugu rubripes 59.85 2.00e-72 266.00
IUUC-Tsy-118836 Tarsius syrichta 92.31 3.00e-47 182.00
IUUC-Tre-121911 Trichoderma reesei 41.84 4.00e-16 79.00
IUUC-Tvi-122617 Trichoderma virens 52.56 2.00e-18 86.30
IUUC-Tme-127092 Tuber melanosporum 37.23 7.00e-28 118.00
IUUC-Tbe-127493 Tupaia belangeri 77.34 9.00e-65 240.00
IUUC-Ttr-128464 Tursiops truncatus 89.67 1.00e-97 350.00
IUUC-Uma-129484 Ustilago maydis 47.54 1.00e-11 64.30
IUUC-Vda-129946 Verticillium dahliae 42.47 2.00e-17 83.20
IUUC-Vpa-130357 Vicugna pacos 83.47 6.00e-85 307.00
IUUC-Vvi-131039 Vitis vinifera 35.83 2.00e-40 159.00
IUUC-Xtr-132679 Xenopus tropicalis 84.06 2.00e-70 259.00
IUUC-Xma-133503 Xiphophorus maculatus 56.83 7.00e-100 357.00
IUUC-Yli-134615 Yarrowia lipolytica 41.26 8.00e-37 147.00
IUUC-Zma-135929 Zea mays 31.21 2.00e-51 196.00
Created Date 25-Jun-2017

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