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Tag Content
iUUCD ID IUUC-Aly-005832
Ensembl Protein ID fgenesh2_kg.1__3956__AT1G48630.1
UniProt Accession D7KD36; D7KD36_ARALL
Genbank Protein ID EFH70381.1
Protein Name Putative uncharacterized protein
Genbank Nucleotide ID GL348713
Gene Name RACK1B_AT; ARALYDRAFT_474002
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.1__3956__AT1G48630.1 fgenesh2_kg.1__3956__AT1G48630.1 fgenesh2_kg.1__3956__AT1G48630.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.00e-45 150.9 147 182
UBD/Beta-Prp 8.50e-58 196.6 12 160
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWDlrt 32
    gH+++v+c++f ++ +++vs+s+D+t+kvW+l
   Q: 147 GHKEWVSCVRFspNTlvPTIVSASWDKTVKVWNLQN 182
    8***********5446667**************865 PP
   


   UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl.....lrslsgheaevtavkfspdgkilvtgseDrtik 77
    +h++ +t+++ +++++++t+srd++i++w++t++++ r++ gh+ +v++v +s+dg++ ++gs D+ ++
   Q: 12 CAHTDMVTAIATpVDNSDVIVTSSRDKSIILWKLTKEDKsygvaQRRMTGHSHFVQDVVLSSDGQFALSGSWDGELR 88
    58999******999***********************999***99******************************** PP
   S: 78 vwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpd 148
    +wdl tg+ ++ + gh+++vls++fs ++ +vs+s+drti++w++ +c ++ +gh+++v+cv+++p+
   Q: 89 LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLG-ECKYTisEADGHKEWVSCVRFSPN 160
    ********************************************7754.4444446899***********995 PP
   

Organism Arabidopsis lyrata
Protein Sequence
(Fasta)
MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT 60
GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR FVGHTKDVLS VAFSTDNRQI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Aly-005832|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAACCCTAAA CAATGGCTGA AGGACTCGTG TTGAAAGGCA CAATGTGTGC CCACACTGAT 60
ATGGTCACCG CCATCGCCAC ACCGGTCGAT AATTCCGACG TTATCGTGAC TTCGTCGCGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Aly-005832|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0022626--C:cytosolic ribosome
GO:0005634--C:nucleus
GO:0071215--P:cellular response to abscisic acid stimulus
GO:0009967--P:positive regulation of signal transduction
GO:0006417--P:regulation of translation
GO:0042254--P:ribosome biogenesis
GO:0048364--P:root development
GO:0009845--P:seed germination
GO:0048367--P:shoot system development

KEGG aly:ARALYDRAFT_474002
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-002694 Amborella trichopoda 78.22 5.00e-153 532.00
IUUC-Ath-007252 Arabidopsis thaliana 98.47 0.00e+00 654.00
IUUC-Ang-009843 Aspergillus niger 60.99 7.00e-115 405.00
IUUC-Ate-010420 Aspergillus terreus 61.90 1.00e-106 378.00
IUUC-Bdi-014690 Brachypodium distachyon 71.86 3.00e-136 476.00
IUUC-Bol-016577 Brassica oleracea 92.40 5.00e-180 622.00
IUUC-Bra-016696 Brassica rapa 92.97 9.00e-180 621.00
IUUC-Cre-022909 Chlamydomonas reinhardtii 68.40 3.00e-134 470.00
IUUC-Cne-026930 Cryptococcus neoformans 64.09 5.00e-123 433.00
IUUC-Cme-027251 Cyanidioschyzon merolae 57.89 8.00e-111 392.00
IUUC-Dse-031255 Dothistroma septosporum 62.23 2.00e-116 411.00
IUUC-Ete-033182 Echinops telfairi 58.52 2.00e-73 268.00
IUUC-Fal-036990 Ficedula albicollis 60.32 2.00e-63 235.00
IUUC-Lpe-050762 Leersia perrieri 70.71 4.00e-136 476.00
IUUC-Mtr-058808 Medicago truncatula 86.20 2.00e-167 580.00
IUUC-Mla-058909 Melampsora laricipopulina 64.40 6.00e-122 429.00
IUUC-Mac-064447 Musa acuminata 69.14 1.00e-130 458.00
IUUC-Oba-075981 Oryza barthii 66.77 5.00e-123 433.00
IUUC-Ogl-077181 Oryza glaberrima 70.92 3.00e-136 477.00
IUUC-Ogu-078035 Oryza glumaepatula 70.92 3.00e-136 477.00
IUUC-Oin-079327 Oryza indica 70.92 3.00e-136 477.00
IUUC-Olo-081084 Oryza longistaminata 70.92 3.00e-136 477.00
IUUC-Ome-081612 Oryza meridionalis 70.92 3.00e-136 477.00
IUUC-Oni-082682 Oryza nivara 68.42 5.00e-134 469.00
IUUC-Opu-083308 Oryza punctata 70.92 3.00e-136 477.00
IUUC-Oru-084200 Oryza rufipogon 70.92 3.00e-136 477.00
IUUC-Osa-085488 Oryza sativa 70.92 3.00e-136 477.00
IUUC-Olu-087817 Ostreococcus lucimarinus 68.52 4.00e-135 473.00
IUUC-Ppa-095752 Physcomitrella patens 72.92 1.00e-141 494.00
IUUC-Pgr-103375 Puccinia graminis 48.92 9.00e-84 302.00
IUUC-Ptt-103839 Puccinia triticina 65.33 9.00e-123 432.00
IUUC-Sce-106224 Saccharomyces cerevisiae 46.46 5.00e-83 300.00
IUUC-Smo-109017 Selaginella moellendorffii 68.90 2.00e-134 470.00
IUUC-Sit-110680 Setaria italica 70.62 2.00e-134 471.00
IUUC-Sly-111218 Solanum lycopersicum 83.02 6.00e-160 555.00
IUUC-Stu-112757 Solanum tuberosum 83.02 1.00e-151 528.00
IUUC-Sbi-114610 Sorghum bicolor 70.62 2.00e-135 474.00
IUUC-Sre-115107 Sporisorium reilianum 61.61 2.00e-119 421.00
IUUC-Vvi-131115 Vitis vinifera 86.24 3.00e-166 576.00
IUUC-Zma-134711 Zea mays 71.81 6.00e-136 476.00
Created Date 25-Jun-2017

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