iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Spo-108053

Ensembl Protein ID

SPBC14C8.06.1:pep

UniProt Accession

P78774; O60088; ARPC1_SCHPO

Genbank Protein ID

CAA70202.1; CAA18424.1; BAA13784.1

Protein Name

Actin-related protein 2/3 complex subunit 1; Arp2/3 complex 41 kDa subunit; p41-ARC

Genbank Nucleotide ID

Y08998; CU329671; D89122

Gene Name

arc1; sop2; SPBC14C8.06

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SPBC14C8.06	SPBC14C8.06.1	SPBC14C8.06.1:pep

Annotation

mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	HINT	Mentha
Protein 3D Structure
PDB	MMDB
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.60e-10	36.6	54	84

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H   vtc+++ +  +++v++s D + +v++ 
   Q: 54   HDKIVTCVDWaPKsNRIVTCSQDRNAYVYEK 84
           7788*******666**********9999985 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Protein Sequence
(Fasta)

MATSQVLHIL PKPSYEHAFN SQRTEFVTTT ATNQVELYEQ DGNGWKHART FSDHDKIVTC 60
VDWAPKSNRI VTCSQDRNAY VYEKRPDGTW KQTLVLLRLN RAATFVRWSP NEDKFAVGSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCATCCGCA AAACAGTAGA CTGCTAGTCC TGTTACTGAA AAATGGCTAC CTCTCAAGTT 60
TTACACATTC TTCCTAAACC CTCTTACGAA CACGCGTTCA ATAGTCAAAG AACAGGTACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0009--Actin-binding
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030479--C:actin cortical patch
GO:0005885--C:Arp2/3 protein complex
GO:0032153--C:cell division site
GO:0051286--C:cell tip
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0051015--F:actin filament binding
GO:0000147--P:actin cortical patch assembly
GO:0034314--P:Arp2/3 complex-mediated actin nucleation
GO:0000281--P:mitotic cytokinesis

KEGG

spo:SPBC14C8.06

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000669	Aegilops tauschii	38.77	1.00e-51	195.00
IUUC-Aml-002044	Ailuropoda melanoleuca	44.77	2.00e-84	303.00
IUUC-Atr-002844	Amborella trichopoda	36.15	3.00e-45	172.00
IUUC-Apl-003325	Anas platyrhynchos	44.80	4.00e-90	322.00
IUUC-Aca-004736	Anolis carolinensis	44.65	1.00e-89	321.00
IUUC-Aly-006568	Arabidopsis lyrata	35.52	1.00e-59	221.00
IUUC-Ath-006683	Arabidopsis thaliana	35.52	3.00e-58	216.00
IUUC-Ago-007966	Ashbya gossypii	39.08	1.00e-72	264.00
IUUC-Acl-008334	Aspergillus clavatus	54.35	4.00e-118	415.00
IUUC-Afl-008485	Aspergillus flavus	53.37	1.00e-110	392.00
IUUC-Afu-008780	Aspergillus fumigatus	53.56	1.00e-117	414.00
IUUC-Ani-009417	Aspergillus nidulans	53.83	4.00e-117	412.00
IUUC-Ang-009543	Aspergillus niger	53.81	4.00e-116	409.00
IUUC-Aor-010234	Aspergillus oryzae	53.03	9.00e-113	397.00
IUUC-Ate-010386	Aspergillus terreus	52.79	1.00e-114	404.00
IUUC-Ame-011852	Astyanax mexicanus	46.13	6.00e-92	328.00
IUUC-Bgr-012192	Blumeria graminis	50.40	5.00e-109	385.00
IUUC-Bta-012530	Bos taurus	44.77	2.00e-84	303.00
IUUC-Bci-013616	Botrytis cinerea	52.25	7.00e-113	398.00
IUUC-Bdi-014632	Brachypodium distachyon	33.68	1.00e-58	218.00
IUUC-Bol-015516	Brassica oleracea	36.16	8.00e-62	228.00
IUUC-Bra-016790	Brassica rapa	35.16	5.00e-61	226.00
IUUC-Cel-018122	Caenorhabditis elegans	43.44	8.00e-86	308.00
IUUC-Cja-019362	Callithrix jacchus	44.77	3.00e-84	303.00
IUUC-Cfa-020167	Canis familiaris	44.77	2.00e-84	303.00
IUUC-Cpo-021933	Cavia porcellus	44.77	2.00e-84	303.00
IUUC-Cre-022590	Chlamydomonas reinhardtii	31.63	7.00e-31	124.00
IUUC-Csa-023277	Chlorocebus sabaeus	42.67	4.00e-86	309.00
IUUC-Cho-024449	Choloepus hoffmanni	77.14	1.00e-12	65.10
IUUC-Cin-025186	Ciona intestinalis	41.71	7.00e-86	308.00
IUUC-Csv-026275	Ciona savignyi	41.24	2.00e-80	290.00
IUUC-Cgl-026732	Colletotrichum gloeosporioides	52.63	2.00e-110	390.00
IUUC-Cne-026926	Cryptococcus neoformans	50.00	1.00e-108	384.00
IUUC-Dre-028057	Danio rerio	46.11	6.00e-92	328.00
IUUC-Dno-029092	Dasypus novemcinctus	44.27	1.00e-82	299.00
IUUC-Dor-030391	Dipodomys ordii	44.80	4.00e-85	306.00
IUUC-Dse-031574	Dothistroma septosporum	53.00	3.00e-111	393.00
IUUC-Dme-031907	Drosophila melanogaster	41.53	3.00e-85	306.00
IUUC-Ete-032299	Echinops telfairi	41.71	9.00e-81	291.00
IUUC-Eca-034074	Equus caballus	44.77	2.00e-84	303.00
IUUC-Eeu-035041	Erinaceus europaeus	58.06	3.00e-24	103.00
IUUC-Fca-036154	Felis catus	44.77	2.00e-84	303.00
IUUC-Fal-037279	Ficedula albicollis	44.65	2.00e-90	323.00
IUUC-Fox-037842	Fusarium oxysporum	52.91	9.00e-114	401.00
IUUC-Fso-038276	Fusarium solani	54.91	1.00e-114	404.00
IUUC-Gmo-039673	Gadus morhua	43.28	4.00e-82	296.00
IUUC-Ggr-039762	Gaeumannomyces graminis	53.32	2.00e-114	403.00
IUUC-Gga-040189	Gallus gallus	44.62	6.00e-90	322.00
IUUC-Gac-042531	Gasterosteus aculeatus	43.55	4.00e-82	296.00
IUUC-Gma-042803	Glycine max	34.60	9.00e-60	221.00
IUUC-Ggo-045355	Gorilla gorilla	29.44	8.00e-44	168.00
IUUC-Hsa-046309	Homo sapiens	44.77	2.00e-84	303.00
IUUC-Hvu-047456	Hordeum vulgare	30.17	5.00e-15	72.00
IUUC-Itr-047864	Ictidomys tridecemlineatus	44.77	2.00e-84	303.00
IUUC-Kpa-049288	Komagataella pastoris	45.67	3.00e-88	316.00
IUUC-Lch-050427	Latimeria chalumnae	43.54	3.00e-88	316.00
IUUC-Lpe-050869	Leersia perrieri	34.79	4.00e-59	219.00
IUUC-Loc-052532	Lepisosteus oculatus	43.62	2.00e-85	306.00
IUUC-Lma-053109	Leptosphaeria maculans	52.37	2.00e-111	393.00
IUUC-Laf-054271	Loxodonta africana	44.77	1.00e-84	304.00
IUUC-Mcc-054857	Macaca mulatta	44.53	6.00e-84	302.00
IUUC-Meu-056302	Macropus eugenii	41.89	1.00e-85	308.00
IUUC-Mor-057167	Magnaporthe oryzae	50.92	8.00e-109	384.00
IUUC-Mtr-057659	Medicago truncatula	34.24	4.00e-60	223.00
IUUC-Mla-058886	Melampsora laricipopulina	47.38	6.00e-104	368.00
IUUC-Mga-059327	Meleagris gallopavo	44.62	6.00e-90	322.00
IUUC-Mvi-060302	Microbotryum violaceum	48.36	8.00e-107	378.00
IUUC-Mmr-060765	Microcebus murinus	44.53	2.00e-84	303.00
IUUC-Mdo-062326	Monodelphis domestica	44.77	4.00e-84	303.00
IUUC-Mmu-063819	Mus musculus	44.77	8.00e-85	305.00
IUUC-Mac-064632	Musa acuminata	34.67	8.00e-62	228.00
IUUC-Mpu-066247	Mustela putorius furo	40.81	4.00e-79	286.00
IUUC-Mlu-067184	Myotis lucifugus	44.77	2.00e-84	303.00
IUUC-Nfi-068383	Neosartorya fischeri	53.56	2.00e-117	413.00
IUUC-Ncr-068777	Neurospora crassa	53.70	6.00e-113	398.00
IUUC-Nle-069900	Nomascus leucogenys	44.77	3.00e-84	303.00
IUUC-Opr-070386	Ochotona princeps	47.81	4.00e-76	276.00
IUUC-Ont-071283	Oreochromis niloticus	45.16	2.00e-82	297.00
IUUC-Oan-073139	Ornithorhynchus anatinus	44.77	1.00e-84	304.00
IUUC-Ocu-074340	Oryctolagus cuniculus	44.77	2.00e-84	303.00
IUUC-Oba-075379	Oryza barthii	34.14	1.00e-60	225.00
IUUC-Obr-076404	Oryza brachyantha	34.13	6.00e-60	222.00
IUUC-Ogl-077409	Oryza glaberrima	32.32	3.00e-54	203.00
IUUC-Ogu-078759	Oryza glumaepatula	34.81	1.00e-60	224.00
IUUC-Oin-079118	Oryza indica	33.87	2.00e-60	224.00
IUUC-Olo-081055	Oryza longistaminata	39.21	8.00e-56	208.00
IUUC-Ome-081281	Oryza meridionalis	34.14	1.00e-60	224.00
IUUC-Oni-083043	Oryza nivara	34.14	1.00e-60	225.00
IUUC-Opu-083392	Oryza punctata	30.72	3.00e-44	170.00
IUUC-Oru-084839	Oryza rufipogon	34.14	1.00e-60	225.00
IUUC-Osa-085377	Oryza sativa	34.14	7.00e-61	225.00
IUUC-Ola-086754	Oryzias latipes	44.57	1.00e-89	321.00
IUUC-Oga-088016	Otolemur garnettii	44.77	5.00e-84	302.00
IUUC-Oar-090122	Ovis aries	44.77	4.00e-84	302.00
IUUC-Ptr-091548	Pan troglodytes	44.77	2.00e-84	303.00
IUUC-Pan-091727	Papio anubis	41.98	2.00e-83	300.00
IUUC-Psi-093767	Pelodiscus sinensis	44.53	9.00e-90	321.00
IUUC-Pma-094124	Petromyzon marinus	43.73	4.00e-87	312.00
IUUC-Pno-095031	Phaeosphaeria nodorum	52.48	4.00e-111	392.00
IUUC-Ppa-095858	Physcomitrella patens	37.43	3.00e-69	253.00
IUUC-Pfo-097107	Poecilia formosa	44.77	5.00e-83	298.00
IUUC-Pab-098238	Pongo abelii	41.98	2.00e-82	297.00
IUUC-Pop-098954	Populus trichocarpa	32.97	8.00e-36	141.00
IUUC-Pca-100580	Procavia capensis	42.25	3.00e-79	286.00
IUUC-Ppe-101681	Prunus persica	35.43	7.00e-61	225.00
IUUC-Pva-102908	Pteropus vampyrus	44.57	9.00e-75	271.00
IUUC-Pgr-103309	Puccinia graminis	49.87	3.00e-107	379.00
IUUC-Ptt-103959	Puccinia triticina	47.13	3.00e-106	376.00
IUUC-Pte-104384	Pyrenophora teres	52.11	2.00e-107	380.00
IUUC-Pyt-104686	Pyrenophora triticirepentis	52.11	1.00e-107	380.00
IUUC-Rno-105008	Rattus norvegicus	46.38	5.00e-80	288.00
IUUC-Sce-106411	Saccharomyces cerevisiae	40.63	1.00e-77	281.00
IUUC-Sha-106691	Sarcophilus harrisii	44.77	5.00e-84	302.00
IUUC-Sja-107792	Schizosaccharomyces japonicus	70.21	2.00e-159	552.00
IUUC-Ssl-108606	Sclerotinia sclerotiorum	52.63	8.00e-114	401.00
IUUC-Smo-108836	Selaginella moellendorffii	37.73	1.00e-64	238.00
IUUC-Sit-110150	Setaria italica	34.21	2.00e-61	227.00
IUUC-Sly-111048	Solanum lycopersicum	35.79	3.00e-62	229.00
IUUC-Sar-113599	Sorex araneus	56.65	4.00e-72	263.00
IUUC-Sbi-114685	Sorghum bicolor	35.12	2.00e-55	207.00
IUUC-Sre-115090	Sporisorium reilianum	60.20	2.00e-108	384.00
IUUC-Ssc-115851	Sus scrofa	44.77	3.00e-84	303.00
IUUC-Tgu-116701	Taeniopygia guttata	44.65	2.00e-90	323.00
IUUC-Tru-117603	Takifugu rubripes	42.48	6.00e-84	302.00
IUUC-Tsy-119515	Tarsius syrichta	63.77	2.00e-51	193.00
IUUC-Tni-119844	Tetraodon nigroviridis	44.09	4.00e-82	296.00
IUUC-Tca-121645	Theobroma cacao	35.54	2.00e-60	224.00
IUUC-Tre-122045	Trichoderma reesei	55.82	4.00e-117	412.00
IUUC-Tvi-122523	Trichoderma virens	55.44	8.00e-116	407.00
IUUC-Tae-123562	Triticum aestivum	35.49	3.00e-57	213.00
IUUC-Tur-126640	Triticum urartu	34.42	3.00e-55	206.00
IUUC-Tme-127018	Tuber melanosporum	51.19	2.00e-105	373.00
IUUC-Tbe-127321	Tupaia belangeri	46.67	3.00e-80	289.00
IUUC-Ttr-128178	Tursiops truncatus	45.98	2.00e-81	293.00
IUUC-Uma-129423	Ustilago maydis	60.20	6.00e-107	379.00
IUUC-Vda-129706	Verticillium dahliae	52.77	3.00e-114	402.00
IUUC-Vvi-131647	Vitis vinifera	34.76	2.00e-59	221.00
IUUC-Xtr-131770	Xenopus tropicalis	45.78	4.00e-89	319.00
IUUC-Xma-133435	Xiphophorus maculatus	44.77	5.00e-83	298.00
IUUC-Yli-134471	Yarrowia lipolytica	50.27	3.00e-99	353.00
IUUC-Zma-135615	Zea mays	33.94	2.00e-59	220.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence