iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016271

Ensembl Protein ID

Bo6g028020.1

UniProt Accession

A0A0D3CQA2; A0A0D3CQA2_BRAOL

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo6g028020	Bo6g028020.1	Bo6g028020.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-35	118.7	184	224
UBD/Beta-Prp	2.50e-65	222.1	13	290

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 224
           999*****966*9778*******************999986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           ++++++++v+ +p +++++++ ++gt+ +w+++t+ + +s++  + +v++ kf+ ++++ v g++D  i+v++++t + v ++++h+d++++++++p
   Q: 13   QRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTDLPVRSAKFIARKQWVVAGADDLYIRVYNYNTMDKVKVFEAHSDYIRCVAVHP 109
           56778999***************************************************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsg 198
           +  +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v++++     ++++l++g
   Q: 110  TLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDyfTGGDKPYLITG 205
           ***********************9999*********************************************98.*********6444555****** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlg 283
           s+d t k+wd+qt++cv+tl ght nv+ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v+++ +++ +++v++  
   Q: 206  SDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYVKSSRRVVIGY 290
           *************************************************************************988888877544 PP

Organism

Brassica oleracea

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLEIKKK LAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQVMA KSFEVTDLPV 60
RSAKFIARKQ WVVAGADDLY IRVYNYNTMD KVKVFEAHSD YIRCVAVHPT LPYVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGAGTA GTGACAATCT CTCCTTCTCT ACTCTTTGAT CCTCTTCAGA TCTCGAGTGA 60
ATCCGCTACG ATTCGATCTC GATTTCCTCT CTGATTTGAG TTAGGGATCG TGTAATCTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003090	Amborella trichopoda	76.87	0.00e+00	1481.00
IUUC-Aca-004301	Anolis carolinensis	60.31	0.00e+00	1112.00
IUUC-Aly-006508	Arabidopsis lyrata	95.01	0.00e+00	1756.00
IUUC-Ath-007635	Arabidopsis thaliana	94.16	0.00e+00	1754.00
IUUC-Afl-008535	Aspergillus flavus	52.60	0.00e+00	848.00
IUUC-Bdi-015046	Brachypodium distachyon	78.67	0.00e+00	1513.00
IUUC-Cja-019145	Callithrix jacchus	60.47	0.00e+00	1110.00
IUUC-Cfa-020564	Canis familiaris	60.59	0.00e+00	1112.00
IUUC-Csa-023383	Chlorocebus sabaeus	64.74	0.00e+00	828.00
IUUC-Cne-026986	Cryptococcus neoformans	49.88	0.00e+00	870.00
IUUC-Dre-027846	Danio rerio	61.84	0.00e+00	1114.00
IUUC-Dor-030462	Dipodomys ordii	58.92	0.00e+00	853.00
IUUC-Ete-033166	Echinops telfairi	57.68	0.00e+00	697.00
IUUC-Fca-036265	Felis catus	60.59	0.00e+00	1110.00
IUUC-Fso-038268	Fusarium solani	53.16	0.00e+00	853.00
IUUC-Gmo-039046	Gadus morhua	60.24	0.00e+00	1099.00
IUUC-Ggr-039863	Gaeumannomyces graminis	52.88	0.00e+00	876.00
IUUC-Gga-041112	Gallus gallus	60.83	0.00e+00	1116.00
IUUC-Gac-041733	Gasterosteus aculeatus	60.63	0.00e+00	1070.00
IUUC-Gma-044126	Glycine max	86.23	0.00e+00	1637.00
IUUC-Ggo-044984	Gorilla gorilla	60.47	0.00e+00	1110.00
IUUC-Hsa-046698	Homo sapiens	60.59	0.00e+00	1111.00
IUUC-Lch-050473	Latimeria chalumnae	59.28	0.00e+00	1111.00
IUUC-Lpe-051579	Leersia perrieri	80.29	0.00e+00	1509.00
IUUC-Loc-052675	Lepisosteus oculatus	59.86	0.00e+00	1115.00
IUUC-Mpo-057538	Magnaporthe poae	52.63	0.00e+00	884.00
IUUC-Mtr-058618	Medicago truncatula	86.54	0.00e+00	1603.00
IUUC-Mga-059875	Meleagris gallopavo	60.57	0.00e+00	1112.00
IUUC-Mvi-060240	Microbotryum violaceum	52.56	0.00e+00	903.00
IUUC-Mmr-061261	Microcebus murinus	60.59	0.00e+00	1112.00
IUUC-Mdo-062076	Monodelphis domestica	60.05	0.00e+00	1117.00
IUUC-Mmu-063324	Mus musculus	60.59	0.00e+00	1113.00
IUUC-Mac-064636	Musa acuminata	80.07	0.00e+00	1529.00
IUUC-Mlu-067059	Myotis lucifugus	59.76	0.00e+00	1098.00
IUUC-Ncr-068659	Neurospora crassa	52.64	0.00e+00	891.00
IUUC-Nle-069034	Nomascus leucogenys	60.47	0.00e+00	1110.00
IUUC-Ont-071563	Oreochromis niloticus	61.35	0.00e+00	1108.00
IUUC-Ocu-074522	Oryctolagus cuniculus	60.83	0.00e+00	1110.00
IUUC-Oba-075760	Oryza barthii	79.11	0.00e+00	1493.00
IUUC-Obr-076163	Oryza brachyantha	80.57	0.00e+00	1524.00
IUUC-Ogl-077450	Oryza glaberrima	80.11	0.00e+00	1521.00
IUUC-Ogu-078994	Oryza glumaepatula	79.37	0.00e+00	1491.00
IUUC-Oin-079856	Oryza indica	79.42	0.00e+00	1488.00
IUUC-Olo-080731	Oryza longistaminata	78.33	0.00e+00	1474.00
IUUC-Oni-082324	Oryza nivara	79.11	0.00e+00	1493.00
IUUC-Opu-083400	Oryza punctata	78.06	0.00e+00	1489.00
IUUC-Oru-084829	Oryza rufipogon	79.24	0.00e+00	1495.00
IUUC-Ola-087245	Oryzias latipes	61.06	0.00e+00	1102.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.46	0.00e+00	1147.00
IUUC-Oar-089842	Ovis aries	60.59	0.00e+00	1112.00
IUUC-Ptr-090501	Pan troglodytes	60.47	0.00e+00	1110.00
IUUC-Pan-092011	Papio anubis	60.47	0.00e+00	1110.00
IUUC-Psi-093308	Pelodiscus sinensis	60.71	0.00e+00	1113.00
IUUC-Pab-097926	Pongo abelii	57.45	0.00e+00	1034.00
IUUC-Pop-099634	Populus trichocarpa	86.63	0.00e+00	1615.00
IUUC-Pca-100965	Procavia capensis	59.72	0.00e+00	1075.00
IUUC-Ppe-101470	Prunus persica	86.69	0.00e+00	1650.00
IUUC-Pgr-103453	Puccinia graminis	52.31	0.00e+00	902.00
IUUC-Ptt-103868	Puccinia triticina	52.64	0.00e+00	900.00
IUUC-Rno-105979	Rattus norvegicus	53.31	0.00e+00	814.00
IUUC-Sce-106269	Saccharomyces cerevisiae	47.36	0.00e+00	751.00
IUUC-Sha-106905	Sarcophilus harrisii	60.23	0.00e+00	1117.00
IUUC-Spo-108299	Schizosaccharomyces pombe	46.72	0.00e+00	801.00
IUUC-Sit-110239	Setaria italica	79.35	0.00e+00	1533.00
IUUC-Sly-111775	Solanum lycopersicum	83.41	0.00e+00	1594.00
IUUC-Stu-112906	Solanum tuberosum	82.58	0.00e+00	1442.00
IUUC-Sbi-113801	Sorghum bicolor	79.48	0.00e+00	1494.00
IUUC-Sre-115040	Sporisorium reilianum	52.99	0.00e+00	903.00
IUUC-Ssc-115593	Sus scrofa	60.47	0.00e+00	1110.00
IUUC-Tru-118025	Takifugu rubripes	60.92	0.00e+00	1103.00
IUUC-Tsy-118824	Tarsius syrichta	57.78	0.00e+00	785.00
IUUC-Tca-121613	Theobroma cacao	87.07	0.00e+00	1666.00
IUUC-Tae-125292	Triticum aestivum	80.76	0.00e+00	1540.00
IUUC-Tme-127041	Tuber melanosporum	53.01	0.00e+00	903.00
IUUC-Tbe-127770	Tupaia belangeri	60.30	0.00e+00	890.00
IUUC-Ttr-129294	Tursiops truncatus	59.81	0.00e+00	1108.00
IUUC-Xtr-132633	Xenopus tropicalis	61.26	0.00e+00	1105.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence