iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	miRNAMap	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-10	39.4	191	223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgt.ikvWDlr 31
           H+++v c+++  ++t ++s+s  gt i+++D+ 
   Q: 191  HQSDVACVSLnqPGTVVASASQKGTlIRLFDTQ 223
           9*********9877*****************76 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MTQQPLRGVT SLHFNQDQSC FCCAMETGVR IYNVEPLMEK GHLDHEQVGS VGLVEMLHRS 60
NLLALVGGGS SPKFSEISVL IWDDAREGKD SKDKLVLEFT FTKPVLAVRM RHDKIVIVLR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCAGCCACT CTAGCACCAC CCCGAGGACT CGTTAGCCTG GGAGGTTTAC CCCTCTATCT 60
TCCTGTGGGC TAACGAGTTC AATGCTTGGC CCGCTTCCGT TAAGGGAGGG GCAGGCCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR032910--WIPI4

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0006914--P:autophagy

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001633	Ailuropoda melanoleuca	99.17	0.00e+00	743.00
IUUC-Aca-005110	Anolis carolinensis	94.17	0.00e+00	709.00
IUUC-Bta-013273	Bos taurus	99.17	0.00e+00	742.00
IUUC-Cja-018761	Callithrix jacchus	95.68	0.00e+00	731.00
IUUC-Cfa-020565	Canis familiaris	98.61	0.00e+00	736.00
IUUC-Cpo-021801	Cavia porcellus	98.89	0.00e+00	738.00
IUUC-Csa-023657	Chlorocebus sabaeus	98.33	0.00e+00	739.00
IUUC-Cin-025682	Ciona intestinalis	59.94	2.00e-124	438.00
IUUC-Dre-027718	Danio rerio	90.00	0.00e+00	683.00
IUUC-Dno-029199	Dasypus novemcinctus	98.61	0.00e+00	734.00
IUUC-Dor-030931	Dipodomys ordii	94.82	0.00e+00	696.00
IUUC-Ete-032303	Echinops telfairi	96.32	0.00e+00	642.00
IUUC-Eca-034053	Equus caballus	98.89	0.00e+00	740.00
IUUC-Fca-036502	Felis catus	99.17	0.00e+00	739.00
IUUC-Gmo-038583	Gadus morhua	90.00	0.00e+00	682.00
IUUC-Gac-042546	Gasterosteus aculeatus	90.20	0.00e+00	655.00
IUUC-Ggo-045610	Gorilla gorilla	95.42	0.00e+00	731.00
IUUC-Hsa-046351	Homo sapiens	95.42	0.00e+00	731.00
IUUC-Itr-048533	Ictidomys tridecemlineatus	99.17	0.00e+00	742.00
IUUC-Lch-050439	Latimeria chalumnae	89.39	0.00e+00	675.00
IUUC-Loc-052269	Lepisosteus oculatus	90.56	0.00e+00	686.00
IUUC-Laf-054475	Loxodonta africana	98.89	0.00e+00	738.00
IUUC-Mcc-055829	Macaca mulatta	98.33	0.00e+00	739.00
IUUC-Mmr-061021	Microcebus murinus	94.16	0.00e+00	728.00
IUUC-Mmu-063935	Mus musculus	99.44	0.00e+00	744.00
IUUC-Mpu-066555	Mustela putorius furo	99.44	0.00e+00	744.00
IUUC-Mlu-067797	Myotis lucifugus	97.50	0.00e+00	725.00
IUUC-Ont-071532	Oreochromis niloticus	90.56	0.00e+00	687.00
IUUC-Ola-086343	Oryzias latipes	89.17	0.00e+00	677.00
IUUC-Oga-088001	Otolemur garnettii	98.89	0.00e+00	741.00
IUUC-Oar-090011	Ovis aries	96.75	0.00e+00	734.00
IUUC-Pan-092470	Papio anubis	98.33	0.00e+00	739.00
IUUC-Pma-094403	Petromyzon marinus	81.52	4.00e-172	597.00
IUUC-Pfo-096982	Poecilia formosa	89.72	0.00e+00	681.00
IUUC-Pca-100176	Procavia capensis	85.98	0.00e+00	634.00
IUUC-Pva-102156	Pteropus vampyrus	95.69	0.00e+00	723.00
IUUC-Ssc-116318	Sus scrofa	99.17	0.00e+00	742.00
IUUC-Tru-118633	Takifugu rubripes	90.28	0.00e+00	683.00
IUUC-Tsy-119533	Tarsius syrichta	99.51	2.00e-120	424.00
IUUC-Tni-119984	Tetraodon nigroviridis	91.53	0.00e+00	685.00
IUUC-Ttr-128703	Tursiops truncatus	99.53	7.00e-126	443.00
IUUC-Xtr-131754	Xenopus tropicalis	86.94	0.00e+00	629.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence