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Tag Content
iUUCD ID IUUC-Aly-006020
Ensembl Protein ID fgenesh2_kg.2__264__AT1G62020.1
UniProt Accession D7KUU6; D7KUU6_ARALL
Genbank Protein ID EFH64300.1
Protein Name Coatomer subunit alpha
Genbank Nucleotide ID GL348714
Gene Name ARALYDRAFT_475134
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.2__264__AT1G62020.1 fgenesh2_kg.2__264__AT1G62020.1 fgenesh2_kg.2__264__AT1G62020.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.20e-39 133.3 50 86
UBD/Beta-Prp 1.70e-78 264.5 3 323
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           H+++v++++f ++ +l+vsG+dD +ikvW+++ +++l
   Q: 50   HEGPVRGVHFhNSqPLFVSGGDDYKIKVWNYKNHRCL 86
           9*********9777*****************999997 PP
   

   UBD/Beta-Prp
   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdl 81
           t +++++++++ + f+p++++++++  +g i++wd+++g+l+ ++ +he++v+ v f+++++++v+g++D+ ikvw++
   Q: 3    TKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
           67889999********************************************************************** PP
   S: 82   stgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDr 159
           ++  c+ tl gh d++++++f+ +  ++vs+s+d+tir+w++++++c++ +l+gh++ v+c+++hp+++l+vs+slD+
   Q: 81   KNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVS-VLTGHNHYVMCASFHPKEDLVVSASLDQ 157
           *************************************************.**************************** PP
   S: 160  tvrlWdl..........................ktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqt 211
           tvr+Wd+                            + +++   +gh++ v++ +f+++ + +vsg++d++vklw + +
   Q: 158  TVRVWDIgalrkktvspaddimrltqmnsdlfgGVDAIVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235
           ****************99999977766666666333333333555********************************8 PP
   S: 212  gec..vrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgseds 287
           ++   v+tl+gh +nv+sv f+ +++++vs s+D+sir+Wd ++++ l+t+ +++++++  av +++ n l++g  ds
   Q: 236  TKAweVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAV-HPEMNLLAAG-HDS 311
           87778**********************************************************.6766655555.689 PP
   S: 288  kvniwklkknep 299
              ++kl++++p
   Q: 312  GMIVFKLERERP 323
           999999988765 PP
   
Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
Protein Sequence
(Fasta)
MLTKFETKSN RVKGLSFHPK RPWILASLHS GVIQLWDYRM GTLIDRFDEH EGPVRGVHFH 60
NSQPLFVSGG DDYKIKVWNY KNHRCLFTLL GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-006020|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTTGACAA AATTCGAAAC CAAGAGTAAC AGAGTTAAGG GTCTGAGCTT TCACCCTAAA 60
CGACCATGGA TTCTCGCGAG TTTGCACAGT GGTGTGATCC AGCTTTGGGA TTATCGTATG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-006020|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005886--C:plasma membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
KEGG aly:ARALYDRAFT_475134
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000064 Aegilops tauschii 77.19 0.00e+00 1970.00
IUUC-Aml-001758 Ailuropoda melanoleuca 54.95 0.00e+00 1365.00
IUUC-Atr-002493 Amborella trichopoda 80.71 0.00e+00 1999.00
IUUC-Apl-003385 Anas platyrhynchos 49.07 0.00e+00 1043.00
IUUC-Aca-005154 Anolis carolinensis 79.41 1.00e-96 344.00
IUUC-Ath-007058 Arabidopsis thaliana 98.85 0.00e+00 2330.00
IUUC-Ago-007992 Ashbya gossypii 43.11 0.00e+00 971.00
IUUC-Acl-008027 Aspergillus clavatus 54.59 0.00e+00 966.00
IUUC-Afu-008964 Aspergillus fumigatus 47.00 0.00e+00 1128.00
IUUC-Ang-009756 Aspergillus niger 46.71 0.00e+00 1122.00
IUUC-Ate-010302 Aspergillus terreus 47.32 0.00e+00 1162.00
IUUC-Ame-011229 Astyanax mexicanus 53.36 0.00e+00 1330.00
IUUC-Bgr-012300 Blumeria graminis 47.07 0.00e+00 1088.00
IUUC-Bta-012524 Bos taurus 55.43 0.00e+00 1357.00
IUUC-Bci-013781 Botrytis cinerea 46.46 0.00e+00 1122.00
IUUC-Bdi-014549 Brachypodium distachyon 77.17 0.00e+00 2004.00
IUUC-Bol-015925 Brassica oleracea 92.30 0.00e+00 2218.00
IUUC-Bra-016978 Brassica rapa 92.95 0.00e+00 2231.00
IUUC-Cel-018115 Caenorhabditis elegans 54.64 0.00e+00 944.00
IUUC-Cja-019107 Callithrix jacchus 54.64 0.00e+00 1345.00
IUUC-Cfa-020675 Canis familiaris 54.63 0.00e+00 1339.00
IUUC-Cpo-021813 Cavia porcellus 55.51 0.00e+00 1378.00
IUUC-Cre-022969 Chlamydomonas reinhardtii 71.26 0.00e+00 1264.00
IUUC-Csa-023523 Chlorocebus sabaeus 55.43 0.00e+00 1378.00
IUUC-Cho-024704 Choloepus hoffmanni 43.60 3.00e-173 602.00
IUUC-Cin-025572 Ciona intestinalis 50.56 0.00e+00 1244.00
IUUC-Csv-025864 Ciona savignyi 57.74 0.00e+00 993.00
IUUC-Cgl-026510 Colletotrichum gloeosporioides 53.97 0.00e+00 972.00
IUUC-Cme-027222 Cyanidioschyzon merolae 42.67 2.00e-145 509.00
IUUC-Dre-027421 Danio rerio 54.21 0.00e+00 1358.00
IUUC-Dno-029303 Dasypus novemcinctus 55.56 0.00e+00 1382.00
IUUC-Dor-030290 Dipodomys ordii 52.90 5.00e-165 575.00
IUUC-Dse-031543 Dothistroma septosporum 46.59 0.00e+00 1075.00
IUUC-Dme-031945 Drosophila melanogaster 61.18 0.00e+00 1040.00
IUUC-Ete-032873 Echinops telfairi 53.51 0.00e+00 1210.00
IUUC-Eca-033773 Equus caballus 54.55 0.00e+00 1338.00
IUUC-Eeu-034874 Erinaceus europaeus 40.86 0.00e+00 653.00
IUUC-Fca-035739 Felis catus 53.90 0.00e+00 1337.00
IUUC-Fal-037263 Ficedula albicollis 50.77 0.00e+00 1203.00
IUUC-Fox-037738 Fusarium oxysporum 46.25 0.00e+00 1130.00
IUUC-Fso-038153 Fusarium solani 46.35 0.00e+00 1120.00
IUUC-Gmo-039602 Gadus morhua 50.52 0.00e+00 1233.00
IUUC-Ggr-039931 Gaeumannomyces graminis 54.20 0.00e+00 958.00
IUUC-Gga-040590 Gallus gallus 54.45 0.00e+00 1369.00
IUUC-Gac-041318 Gasterosteus aculeatus 53.86 0.00e+00 1353.00
IUUC-Gma-043585 Glycine max 82.52 0.00e+00 2085.00
IUUC-Ggo-045029 Gorilla gorilla 55.03 0.00e+00 1369.00
IUUC-Hsa-046078 Homo sapiens 55.03 0.00e+00 1368.00
IUUC-Hvu-047556 Hordeum vulgare 77.22 0.00e+00 2016.00
IUUC-Itr-048881 Ictidomys tridecemlineatus 46.81 0.00e+00 767.00
IUUC-Kpa-049256 Komagataella pastoris 45.43 0.00e+00 1059.00
IUUC-Lch-049706 Latimeria chalumnae 53.99 0.00e+00 1350.00
IUUC-Lpe-051316 Leersia perrieri 84.89 0.00e+00 1528.00
IUUC-Loc-051867 Lepisosteus oculatus 49.89 0.00e+00 815.00
IUUC-Lma-053138 Leptosphaeria maculans 46.80 0.00e+00 1123.00
IUUC-Laf-053510 Loxodonta africana 55.36 0.00e+00 1392.00
IUUC-Mcc-055836 Macaca mulatta 54.46 0.00e+00 1368.00
IUUC-Meu-056238 Macropus eugenii 56.72 0.00e+00 773.00
IUUC-Mor-057172 Magnaporthe oryzae 45.82 0.00e+00 1101.00
IUUC-Mpo-057300 Magnaporthe poae 45.91 0.00e+00 1104.00
IUUC-Mtr-058248 Medicago truncatula 81.64 0.00e+00 2091.00
IUUC-Mla-059019 Melampsora laricipopulina 50.12 0.00e+00 1230.00
IUUC-Mga-059499 Meleagris gallopavo 54.36 0.00e+00 1365.00
IUUC-Mvi-060336 Microbotryum violaceum 50.77 0.00e+00 1213.00
IUUC-Mmr-061102 Microcebus murinus 54.95 0.00e+00 1353.00
IUUC-Mdo-062594 Monodelphis domestica 55.31 0.00e+00 1404.00
IUUC-Mmu-063736 Mus musculus 55.11 0.00e+00 1368.00
IUUC-Mac-065398 Musa acuminata 72.56 0.00e+00 1837.00
IUUC-Mpu-066701 Mustela putorius furo 54.66 0.00e+00 1368.00
IUUC-Mlu-067392 Myotis lucifugus 55.33 0.00e+00 1360.00
IUUC-Nfi-068270 Neosartorya fischeri 54.82 0.00e+00 967.00
IUUC-Ncr-068892 Neurospora crassa 47.24 0.00e+00 1117.00
IUUC-Nle-069634 Nomascus leucogenys 66.07 0.00e+00 946.00
IUUC-Opr-070952 Ochotona princeps 42.87 0.00e+00 669.00
IUUC-Ont-072488 Oreochromis niloticus 53.92 0.00e+00 1335.00
IUUC-Ocu-074211 Oryctolagus cuniculus 55.51 0.00e+00 1375.00
IUUC-Oba-074992 Oryza barthii 83.29 0.00e+00 1414.00
IUUC-Ogl-077364 Oryza glaberrima 84.64 0.00e+00 1527.00
IUUC-Ogu-078257 Oryza glumaepatula 84.52 0.00e+00 1524.00
IUUC-Oin-079274 Oryza indica 84.52 0.00e+00 1526.00
IUUC-Ome-081993 Oryza meridionalis 83.95 0.00e+00 1383.00
IUUC-Oni-082874 Oryza nivara 84.52 0.00e+00 1524.00
IUUC-Opu-083885 Oryza punctata 76.44 0.00e+00 2001.00
IUUC-Oru-084274 Oryza rufipogon 84.52 0.00e+00 1526.00
IUUC-Osa-085565 Oryza sativa 84.52 0.00e+00 1526.00
IUUC-Ola-086921 Oryzias latipes 54.46 0.00e+00 1337.00
IUUC-Olu-087639 Ostreococcus lucimarinus 62.96 0.00e+00 1578.00
IUUC-Oga-087991 Otolemur garnettii 52.25 0.00e+00 1273.00
IUUC-Oar-089590 Ovis aries 55.35 0.00e+00 1372.00
IUUC-Ptr-090808 Pan troglodytes 55.11 0.00e+00 1371.00
IUUC-Pan-092475 Papio anubis 55.31 0.00e+00 1371.00
IUUC-Psi-093044 Pelodiscus sinensis 48.18 0.00e+00 985.00
IUUC-Pno-094839 Phaeosphaeria nodorum 45.68 0.00e+00 1051.00
IUUC-Ppa-095785 Physcomitrella patens 70.48 0.00e+00 1808.00
IUUC-Pfo-097493 Poecilia formosa 53.75 0.00e+00 1332.00
IUUC-Pab-098497 Pongo abelii 55.43 0.00e+00 1379.00
IUUC-Pop-099992 Populus trichocarpa 85.41 0.00e+00 2108.00
IUUC-Pca-100413 Procavia capensis 60.61 0.00e+00 694.00
IUUC-Ppe-101899 Prunus persica 83.36 0.00e+00 2100.00
IUUC-Pva-102126 Pteropus vampyrus 53.13 0.00e+00 1296.00
IUUC-Pgr-103376 Puccinia graminis 50.04 0.00e+00 1238.00
IUUC-Ptt-103978 Puccinia triticina 53.79 0.00e+00 807.00
IUUC-Pte-104126 Pyrenophora teres 46.24 0.00e+00 1066.00
IUUC-Pyt-104778 Pyrenophora triticirepentis 39.49 0.00e+00 729.00
IUUC-Rno-105428 Rattus norvegicus 55.43 0.00e+00 1373.00
IUUC-Sce-106464 Saccharomyces cerevisiae 42.85 0.00e+00 962.00
IUUC-Sha-107301 Sarcophilus harrisii 54.27 0.00e+00 1357.00
IUUC-Sja-107961 Schizosaccharomyces japonicus 44.21 0.00e+00 1072.00
IUUC-Spo-108217 Schizosaccharomyces pombe 44.93 0.00e+00 1059.00
IUUC-Ssl-108643 Sclerotinia sclerotiorum 46.68 0.00e+00 1123.00
IUUC-Smo-109582 Selaginella moellendorffii 75.50 0.00e+00 1396.00
IUUC-Sly-111759 Solanum lycopersicum 83.20 0.00e+00 2120.00
IUUC-Stu-112564 Solanum tuberosum 82.95 0.00e+00 2113.00
IUUC-Sar-113313 Sorex araneus 45.84 2.00e-178 619.00
IUUC-Sbi-114388 Sorghum bicolor 85.25 0.00e+00 1531.00
IUUC-Sre-115209 Sporisorium reilianum 53.78 0.00e+00 1006.00
IUUC-Ssc-115933 Sus scrofa 55.43 0.00e+00 1375.00
IUUC-Tgu-117109 Taeniopygia guttata 42.50 1.00e-107 383.00
IUUC-Tru-117772 Takifugu rubripes 52.73 0.00e+00 1304.00
IUUC-Tsy-119105 Tarsius syrichta 52.48 0.00e+00 1045.00
IUUC-Tca-120918 Theobroma cacao 89.09 0.00e+00 1593.00
IUUC-Tre-121951 Trichoderma reesei 45.60 0.00e+00 1094.00
IUUC-Tvi-122359 Trichoderma virens 46.34 0.00e+00 1122.00
IUUC-Tae-125527 Triticum aestivum 76.52 0.00e+00 1976.00
IUUC-Tur-126754 Triticum urartu 75.88 0.00e+00 1931.00
IUUC-Tme-127170 Tuber melanosporum 48.45 0.00e+00 1186.00
IUUC-Tbe-127882 Tupaia belangeri 69.35 2.00e-129 456.00
IUUC-Ttr-128217 Tursiops truncatus 53.19 0.00e+00 1299.00
IUUC-Uma-129337 Ustilago maydis 54.28 0.00e+00 1010.00
IUUC-Vda-129828 Verticillium dahliae 46.02 0.00e+00 1105.00
IUUC-Vpa-130537 Vicugna pacos 54.90 0.00e+00 1348.00
IUUC-Vvi-130958 Vitis vinifera 82.54 0.00e+00 2105.00
IUUC-Xtr-132857 Xenopus tropicalis 53.34 0.00e+00 1296.00
IUUC-Xma-133138 Xiphophorus maculatus 53.67 0.00e+00 1332.00
IUUC-Yli-134399 Yarrowia lipolytica 48.78 0.00e+00 842.00
IUUC-Zma-135612 Zea mays 76.70 0.00e+00 1987.00
Created Date 25-Jun-2017

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