iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006733

UUCD1 version

UUC-ArT-00673

Ensembl Protein ID

AT1G03110.1

UniProt Accession

Q93WD7; Q93WD7_ARATH

Genbank Protein ID

AAK44043.1; AAL15226.1; AEE27532.1

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Genbank Nucleotide ID

AF370228; AY059120; CP002684

Gene Name

TRM82; AtTRM82; tRNA modification 82; At1g03110; F10O3.6; F10O3_6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G03110	AT1G03110.1	AT1G03110.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-16	60.0	201	243

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf......sdtllvsGsdDgtikvWDlrtgvllk 37
           gH++ +tc af      + ++l sGs+D t+++WD+++g ll 
   Q: 201  GHSEFITCTAFvstpelTQGYLMSGSGDSTVRLWDITSGSLLD 243
           89999*******997743399*****************99875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MQEESHIEEV EIQNKLEVAP ALISVHPSQK SVAVAVGSDL RIFDLIENCP VSLVDESDGP 60
IRKESIRAIR YSTSGKLFVS AGDDKLVKIW SADSWRCLNT VCSEKRVSAV AISSDDSHVC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATACATAA AATCGATTTT GTTGTTTGTG CTTTTGTGGC GGCTTTTTTT CACGAACTGC 60
TTTAAACCCT AAAAACTCCA ACCTTTGTTC TCTGTGTAAC AACAACAACA ACAATGCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0043527--C:tRNA methyltransferase complex
GO:0008618--P:7-methylguanosine metabolic process
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation
GO:0006400--P:tRNA modification

KEGG

ath:AT1G03110

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000556	Aegilops tauschii	48.79	3.00e-94	337.00
IUUC-Atr-002431	Amborella trichopoda	51.20	1.00e-35	141.00
IUUC-Apl-003975	Anas platyrhynchos	31.05	6.00e-27	114.00
IUUC-Aca-005170	Anolis carolinensis	35.03	8.00e-16	77.40
IUUC-Aly-005769	Arabidopsis lyrata	95.78	0.00e+00	790.00
IUUC-Acl-008151	Aspergillus clavatus	24.79	4.00e-11	62.00
IUUC-Afl-008518	Aspergillus flavus	32.92	4.00e-14	71.60
IUUC-Aor-010133	Aspergillus oryzae	27.06	1.00e-14	73.60
IUUC-Ame-010613	Astyanax mexicanus	32.10	8.00e-27	114.00
IUUC-Bgr-012067	Blumeria graminis	37.50	7.00e-12	64.70
IUUC-Bta-012788	Bos taurus	30.54	1.00e-23	103.00
IUUC-Bdi-014458	Brachypodium distachyon	52.51	9.00e-105	373.00
IUUC-Bol-015373	Brassica oleracea	81.37	9.00e-178	617.00
IUUC-Bra-016644	Brassica rapa	80.76	0.00e+00	637.00
IUUC-Cpo-021963	Cavia porcellus	33.84	9.00e-23	100.00
IUUC-Csa-024148	Chlorocebus sabaeus	34.36	1.00e-16	80.10
IUUC-Cne-026834	Cryptococcus neoformans	26.38	1.00e-14	74.30
IUUC-Dre-028427	Danio rerio	28.25	4.00e-25	108.00
IUUC-Dor-030522	Dipodomys ordii	29.19	1.00e-26	113.00
IUUC-Dme-032136	Drosophila melanogaster	39.36	7.00e-13	67.80
IUUC-Fca-035833	Felis catus	33.84	6.00e-22	97.80
IUUC-Fal-037497	Ficedula albicollis	32.13	5.00e-27	114.00
IUUC-Gga-040547	Gallus gallus	30.65	2.00e-23	102.00
IUUC-Gac-041761	Gasterosteus aculeatus	27.11	2.00e-24	105.00
IUUC-Gma-043722	Glycine max	60.14	4.00e-135	473.00
IUUC-Ggo-045340	Gorilla gorilla	33.85	2.00e-15	76.30
IUUC-Hsa-046403	Homo sapiens	34.36	9.00e-17	80.50
IUUC-Hvu-047643	Hordeum vulgare	51.20	2.00e-107	381.00
IUUC-Itr-048103	Ictidomys tridecemlineatus	31.33	7.00e-26	110.00
IUUC-Kpa-049283	Komagataella pastoris	34.06	9.00e-16	77.40
IUUC-Lch-050682	Latimeria chalumnae	34.27	1.00e-26	113.00
IUUC-Lpe-050712	Leersia perrieri	49.43	6.00e-114	403.00
IUUC-Loc-052599	Lepisosteus oculatus	30.80	1.00e-27	116.00
IUUC-Laf-054390	Loxodonta africana	32.16	6.00e-26	111.00
IUUC-Mcc-054747	Macaca mulatta	34.85	9.00e-17	80.50
IUUC-Mtr-058600	Medicago truncatula	60.73	2.00e-139	487.00
IUUC-Mla-059135	Melampsora laricipopulina	28.71	5.00e-19	88.60
IUUC-Mga-059876	Meleagris gallopavo	27.48	2.00e-24	105.00
IUUC-Mvi-060359	Microbotryum violaceum	26.75	1.00e-09	57.80
IUUC-Mmr-061518	Microcebus murinus	30.47	3.00e-21	95.50
IUUC-Mac-065625	Musa acuminata	52.02	4.00e-113	400.00
IUUC-Nfi-068402	Neosartorya fischeri	26.94	2.00e-10	59.70
IUUC-Nle-069914	Nomascus leucogenys	32.82	1.00e-13	70.50
IUUC-Ont-071555	Oreochromis niloticus	31.67	4.00e-24	105.00
IUUC-Oan-072951	Ornithorhynchus anatinus	29.67	2.00e-24	106.00
IUUC-Ocu-074679	Oryctolagus cuniculus	31.40	1.00e-17	84.00
IUUC-Oba-075355	Oryza barthii	47.62	1.00e-99	356.00
IUUC-Obr-076769	Oryza brachyantha	51.15	2.00e-120	425.00
IUUC-Ogl-077168	Oryza glaberrima	50.83	2.00e-114	404.00
IUUC-Ogu-078275	Oryza glumaepatula	47.14	3.00e-98	351.00
IUUC-Oin-079207	Oryza indica	50.83	2.00e-114	404.00
IUUC-Ome-081169	Oryza meridionalis	34.46	2.00e-51	196.00
IUUC-Oni-082437	Oryza nivara	47.38	4.00e-99	354.00
IUUC-Opu-084031	Oryza punctata	50.83	1.00e-112	399.00
IUUC-Oru-084380	Oryza rufipogon	47.38	5.00e-99	353.00
IUUC-Osa-085327	Oryza sativa	50.59	1.00e-113	402.00
IUUC-Ola-086716	Oryzias latipes	31.70	3.00e-24	105.00
IUUC-Olu-087708	Ostreococcus lucimarinus	37.90	2.00e-38	152.00
IUUC-Oar-090239	Ovis aries	30.58	2.00e-23	102.00
IUUC-Ptr-090851	Pan troglodytes	33.85	2.00e-15	76.30
IUUC-Pan-092558	Papio anubis	34.36	1.00e-16	80.50
IUUC-Psi-093792	Pelodiscus sinensis	30.58	1.00e-23	103.00
IUUC-Ppa-095757	Physcomitrella patens	41.23	7.00e-73	266.00
IUUC-Pfo-096465	Poecilia formosa	28.37	7.00e-23	100.00
IUUC-Pab-097722	Pongo abelii	34.34	6.00e-17	81.30
IUUC-Pop-098979	Populus trichocarpa	60.14	2.00e-143	501.00
IUUC-Pca-100753	Procavia capensis	36.36	9.00e-18	84.00
IUUC-Ppe-101515	Prunus persica	64.58	4.00e-152	530.00
IUUC-Sja-107780	Schizosaccharomyces japonicus	25.37	2.00e-15	76.30
IUUC-Smo-108938	Selaginella moellendorffii	40.88	5.00e-70	257.00
IUUC-Sit-110020	Setaria italica	52.05	9.00e-115	406.00
IUUC-Sly-111543	Solanum lycopersicum	58.10	4.00e-141	493.00
IUUC-Stu-111925	Solanum tuberosum	58.10	6.00e-143	499.00
IUUC-Sbi-114061	Sorghum bicolor	52.66	1.00e-119	422.00
IUUC-Tgu-117321	Taeniopygia guttata	31.05	2.00e-22	99.40
IUUC-Tru-118454	Takifugu rubripes	31.71	7.00e-26	110.00
IUUC-Tni-119894	Tetraodon nigroviridis	31.60	9.00e-22	97.10
IUUC-Tca-121746	Theobroma cacao	63.11	5.00e-146	510.00
IUUC-Tae-124459	Triticum aestivum	52.39	4.00e-111	394.00
IUUC-Tur-126254	Triticum urartu	47.81	4.00e-86	310.00
IUUC-Tbe-127683	Tupaia belangeri	47.31	3.00e-15	75.50
IUUC-Ttr-129056	Tursiops truncatus	34.62	5.00e-24	104.00
IUUC-Vvi-131428	Vitis vinifera	62.70	4.00e-155	540.00
IUUC-Xma-133605	Xiphophorus maculatus	28.22	1.00e-21	96.70

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence